Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
405D:A10:B5
Extra
PDB:
ATOM 1 O3' A A 9 1.710 8.064 -3.212 1.00 37.20 O
ATOM 2 P A A 10 1.835 8.916 -4.562 1.00 39.16 P
ATOM 3 OP1 A A 10 1.391 8.097 -5.719 1.00 38.16 O
ATOM 4 OP2 A A 10 3.181 9.549 -4.574 1.00 37.79 O
ATOM 5 O5' A A 10 0.747 10.040 -4.330 1.00 37.93 O
ATOM 6 C5' A A 10 -0.559 9.668 -3.897 1.00 33.84 C
ATOM 7 C4' A A 10 -1.323 10.885 -3.508 1.00 27.84 C
ATOM 8 O4' A A 10 -0.760 11.420 -2.284 1.00 24.97 O
ATOM 9 C3' A A 10 -1.171 12.026 -4.489 1.00 29.85 C
ATOM 10 O3' A A 10 -2.002 11.879 -5.635 1.00 32.31 O
ATOM 11 C2' A A 10 -1.551 13.206 -3.617 1.00 31.44 C
ATOM 12 O2' A A 10 -2.944 13.257 -3.403 1.00 30.21 O
ATOM 13 C1' A A 10 -0.850 12.834 -2.305 1.00 27.70 C
ATOM 14 N9 A A 10 0.505 13.381 -2.196 1.00 22.50 N
ATOM 15 C8 A A 10 1.683 12.745 -2.494 1.00 27.35 C
ATOM 16 N7 A A 10 2.748 13.486 -2.307 1.00 25.17 N
ATOM 17 C5 A A 10 2.238 14.695 -1.854 1.00 22.44 C
ATOM 18 C6 A A 10 2.858 15.906 -1.471 1.00 27.63 C
ATOM 19 N6 A A 10 4.180 16.114 -1.505 1.00 30.72 N
ATOM 20 N1 A A 10 2.066 16.910 -1.053 1.00 21.82 N
ATOM 21 C2 A A 10 0.743 16.712 -1.029 1.00 29.90 C
ATOM 22 N3 A A 10 0.042 15.628 -1.368 1.00 27.32 N
ATOM 23 C4 A A 10 0.859 14.643 -1.777 1.00 21.34 C
ATOM 24 P U A 11 -1.477 12.411 -7.055 1.00 33.04 P
ATOM 25 OP1 U A 11 -2.420 11.976 -8.119 1.00 41.07 O
ATOM 26 OP2 U A 11 -0.039 12.069 -7.161 1.00 31.78 O
ATOM 27 O5' U A 11 -1.566 13.993 -6.914 1.00 39.65 O
TER
ATOM 1 O3' A B 4 7.684 25.554 -0.211 1.00 33.29 O
ATOM 2 P C B 5 7.599 24.968 1.287 1.00 34.60 P
ATOM 3 OP1 C B 5 7.525 26.131 2.194 1.00 38.06 O
ATOM 4 OP2 C B 5 8.667 23.951 1.473 1.00 34.18 O
ATOM 5 O5' C B 5 6.199 24.206 1.325 1.00 27.92 O
ATOM 6 C5' C B 5 4.984 24.925 1.067 1.00 31.74 C
ATOM 7 C4' C B 5 3.801 23.987 0.991 1.00 31.07 C
ATOM 8 O4' C B 5 3.882 23.172 -0.202 1.00 22.52 O
ATOM 9 C3' C B 5 3.642 22.971 2.107 1.00 35.61 C
ATOM 10 O3' C B 5 3.067 23.555 3.271 1.00 37.06 O
ATOM 11 C2' C B 5 2.696 21.974 1.456 1.00 34.06 C
ATOM 12 O2' C B 5 1.374 22.484 1.417 1.00 35.67 O
ATOM 13 C1' C B 5 3.269 21.913 0.037 1.00 27.55 C
ATOM 14 N1 C B 5 4.307 20.884 -0.111 1.00 32.64 N
ATOM 15 C2 C B 5 3.934 19.552 -0.348 1.00 35.32 C
ATOM 16 O2 C B 5 2.732 19.275 -0.476 1.00 41.34 O
ATOM 17 N3 C B 5 4.897 18.606 -0.441 1.00 35.42 N
ATOM 18 C4 C B 5 6.183 18.949 -0.325 1.00 35.22 C
ATOM 19 N4 C B 5 7.101 17.992 -0.417 1.00 40.19 N
ATOM 20 C5 C B 5 6.587 20.295 -0.108 1.00 34.56 C
ATOM 21 C6 C B 5 5.627 21.221 -0.007 1.00 35.22 C
ATOM 22 P U B 6 3.265 22.843 4.694 1.00 31.13 P
ATOM 23 OP1 U B 6 2.719 23.745 5.731 1.00 31.20 O
ATOM 24 OP2 U B 6 4.677 22.379 4.784 1.00 34.56 O
ATOM 25 O5' U B 6 2.343 21.552 4.608 1.00 30.24 O
TER
ATOM 2 P A A 10 1.835 8.916 -4.562 1.00 39.16 P
ATOM 3 OP1 A A 10 1.391 8.097 -5.719 1.00 38.16 O
ATOM 4 OP2 A A 10 3.181 9.549 -4.574 1.00 37.79 O
ATOM 5 O5' A A 10 0.747 10.040 -4.330 1.00 37.93 O
ATOM 6 C5' A A 10 -0.559 9.668 -3.897 1.00 33.84 C
ATOM 7 C4' A A 10 -1.323 10.885 -3.508 1.00 27.84 C
ATOM 8 O4' A A 10 -0.760 11.420 -2.284 1.00 24.97 O
ATOM 9 C3' A A 10 -1.171 12.026 -4.489 1.00 29.85 C
ATOM 10 O3' A A 10 -2.002 11.879 -5.635 1.00 32.31 O
ATOM 11 C2' A A 10 -1.551 13.206 -3.617 1.00 31.44 C
ATOM 12 O2' A A 10 -2.944 13.257 -3.403 1.00 30.21 O
ATOM 13 C1' A A 10 -0.850 12.834 -2.305 1.00 27.70 C
ATOM 14 N9 A A 10 0.505 13.381 -2.196 1.00 22.50 N
ATOM 15 C8 A A 10 1.683 12.745 -2.494 1.00 27.35 C
ATOM 16 N7 A A 10 2.748 13.486 -2.307 1.00 25.17 N
ATOM 17 C5 A A 10 2.238 14.695 -1.854 1.00 22.44 C
ATOM 18 C6 A A 10 2.858 15.906 -1.471 1.00 27.63 C
ATOM 19 N6 A A 10 4.180 16.114 -1.505 1.00 30.72 N
ATOM 20 N1 A A 10 2.066 16.910 -1.053 1.00 21.82 N
ATOM 21 C2 A A 10 0.743 16.712 -1.029 1.00 29.90 C
ATOM 22 N3 A A 10 0.042 15.628 -1.368 1.00 27.32 N
ATOM 23 C4 A A 10 0.859 14.643 -1.777 1.00 21.34 C
ATOM 24 P U A 11 -1.477 12.411 -7.055 1.00 33.04 P
ATOM 25 OP1 U A 11 -2.420 11.976 -8.119 1.00 41.07 O
ATOM 26 OP2 U A 11 -0.039 12.069 -7.161 1.00 31.78 O
ATOM 27 O5' U A 11 -1.566 13.993 -6.914 1.00 39.65 O
TER
ATOM 1 O3' A B 4 7.684 25.554 -0.211 1.00 33.29 O
ATOM 2 P C B 5 7.599 24.968 1.287 1.00 34.60 P
ATOM 3 OP1 C B 5 7.525 26.131 2.194 1.00 38.06 O
ATOM 4 OP2 C B 5 8.667 23.951 1.473 1.00 34.18 O
ATOM 5 O5' C B 5 6.199 24.206 1.325 1.00 27.92 O
ATOM 6 C5' C B 5 4.984 24.925 1.067 1.00 31.74 C
ATOM 7 C4' C B 5 3.801 23.987 0.991 1.00 31.07 C
ATOM 8 O4' C B 5 3.882 23.172 -0.202 1.00 22.52 O
ATOM 9 C3' C B 5 3.642 22.971 2.107 1.00 35.61 C
ATOM 10 O3' C B 5 3.067 23.555 3.271 1.00 37.06 O
ATOM 11 C2' C B 5 2.696 21.974 1.456 1.00 34.06 C
ATOM 12 O2' C B 5 1.374 22.484 1.417 1.00 35.67 O
ATOM 13 C1' C B 5 3.269 21.913 0.037 1.00 27.55 C
ATOM 14 N1 C B 5 4.307 20.884 -0.111 1.00 32.64 N
ATOM 15 C2 C B 5 3.934 19.552 -0.348 1.00 35.32 C
ATOM 16 O2 C B 5 2.732 19.275 -0.476 1.00 41.34 O
ATOM 17 N3 C B 5 4.897 18.606 -0.441 1.00 35.42 N
ATOM 18 C4 C B 5 6.183 18.949 -0.325 1.00 35.22 C
ATOM 19 N4 C B 5 7.101 17.992 -0.417 1.00 40.19 N
ATOM 20 C5 C B 5 6.587 20.295 -0.108 1.00 34.56 C
ATOM 21 C6 C B 5 5.627 21.221 -0.007 1.00 35.22 C
ATOM 22 P U B 6 3.265 22.843 4.694 1.00 31.13 P
ATOM 23 OP1 U B 6 2.719 23.745 5.731 1.00 31.20 O
ATOM 24 OP2 U B 6 4.677 22.379 4.784 1.00 34.56 O
ATOM 25 O5' U B 6 2.343 21.552 4.608 1.00 30.24 O
TER
Atoms:
OP1: (1.391,8.097,-5.719)
OP2: (3.181,9.549,-4.574)
C3': (-1.171,12.026,-4.489)
C1': (-0.850,12.834,-2.305)
C5': (-0.559,9.668,-3.897)
O4': (-0.760,11.420,-2.284)
C8: (1.683,12.745,-2.494)
O2': (-2.944,13.257,-3.403)
C6: (2.858,15.906,-1.471)
C5: (2.238,14.695,-1.854)
C4: (0.859,14.643,-1.777)
P: (1.835,8.916,-4.562)
C4': (-1.323,10.885,-3.508)
C2': (-1.551,13.206,-3.617)
C2: (0.743,16.712,-1.029)
N1: (2.066,16.910,-1.053)
N3: (0.042,15.628,-1.368)
N6: (4.180,16.114,-1.505)
N7: (2.748,13.486,-2.307)
N9: (0.505,13.381,-2.196)
O5': (0.747,10.040,-4.330)
O3': (-2.002,11.879,-5.635)
OP2: (3.181,9.549,-4.574)
C3': (-1.171,12.026,-4.489)
C1': (-0.850,12.834,-2.305)
C5': (-0.559,9.668,-3.897)
O4': (-0.760,11.420,-2.284)
C8: (1.683,12.745,-2.494)
O2': (-2.944,13.257,-3.403)
C6: (2.858,15.906,-1.471)
C5: (2.238,14.695,-1.854)
C4: (0.859,14.643,-1.777)
P: (1.835,8.916,-4.562)
C4': (-1.323,10.885,-3.508)
C2': (-1.551,13.206,-3.617)
C2: (0.743,16.712,-1.029)
N1: (2.066,16.910,-1.053)
N3: (0.042,15.628,-1.368)
N6: (4.180,16.114,-1.505)
N7: (2.748,13.486,-2.307)
N9: (0.505,13.381,-2.196)
O5': (0.747,10.040,-4.330)
O3': (-2.002,11.879,-5.635)
C2: (3.934,19.552,-0.348)
OP1: (7.525,26.131,2.194)
OP2: (8.667,23.951,1.473)
C4: (6.183,18.949,-0.325)
O5': (6.199,24.206,1.325)
C3': (3.642,22.971,2.107)
C1': (3.269,21.913,0.037)
O4': (3.882,23.172,-0.202)
C5': (4.984,24.925,1.067)
P: (7.599,24.968,1.287)
O2: (2.732,19.275,-0.476)
C4': (3.801,23.987,0.991)
C2': (2.696,21.974,1.456)
O2': (1.374,22.484,1.417)
N1: (4.307,20.884,-0.111)
N3: (4.897,18.606,-0.441)
N4: (7.101,17.992,-0.417)
C6: (5.627,21.221,-0.007)
C5: (6.587,20.295,-0.108)
O3': (3.067,23.555,3.271)
OP1: (7.525,26.131,2.194)
OP2: (8.667,23.951,1.473)
C4: (6.183,18.949,-0.325)
O5': (6.199,24.206,1.325)
C3': (3.642,22.971,2.107)
C1': (3.269,21.913,0.037)
O4': (3.882,23.172,-0.202)
C5': (4.984,24.925,1.067)
P: (7.599,24.968,1.287)
O2: (2.732,19.275,-0.476)
C4': (3.801,23.987,0.991)
C2': (2.696,21.974,1.456)
O2': (1.374,22.484,1.417)
N1: (4.307,20.884,-0.111)
N3: (4.897,18.606,-0.441)
N4: (7.101,17.992,-0.417)
C6: (5.627,21.221,-0.007)
C5: (6.587,20.295,-0.108)
O3': (3.067,23.555,3.271)
Image (generated by PyMOL):