Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:C16:C28
Extra
PDB:
ATOM 1 O3' A A 15 -20.591 -35.931 7.887 1.00 9.69 O
ATOM 2 P A A 16 -21.700 -35.965 9.038 1.00 14.53 P
ATOM 3 OP1 A A 16 -21.455 -37.164 9.899 1.00 13.26 O
ATOM 4 OP2 A A 16 -23.026 -35.779 8.378 1.00 7.42 O
ATOM 5 O5' A A 16 -21.388 -34.643 9.879 1.00 13.49 O
ATOM 6 C5' A A 16 -20.098 -34.425 10.453 1.00 12.97 C
ATOM 7 C4' A A 16 -20.023 -33.054 11.077 1.00 11.54 C
ATOM 8 O4' A A 16 -20.174 -32.050 10.045 1.00 13.06 O
ATOM 9 C3' A A 16 -21.123 -32.734 12.071 1.00 11.54 C
ATOM 10 O3' A A 16 -20.836 -33.239 13.359 1.00 9.34 O
ATOM 11 C2' A A 16 -21.149 -31.220 12.048 1.00 13.26 C
ATOM 12 O2' A A 16 -20.076 -30.706 12.796 1.00 15.19 O
ATOM 13 C1' A A 16 -20.891 -30.940 10.565 1.00 15.35 C
ATOM 14 N9 A A 16 -22.107 -30.780 9.767 1.00 17.06 N
ATOM 15 C8 A A 16 -22.653 -31.717 8.935 1.00 19.80 C
ATOM 16 N7 A A 16 -23.739 -31.312 8.324 1.00 22.35 N
ATOM 17 C5 A A 16 -23.923 -30.017 8.787 1.00 18.21 C
ATOM 18 C6 A A 16 -24.905 -29.040 8.512 1.00 17.34 C
ATOM 19 N6 A A 16 -25.934 -29.229 7.687 1.00 16.08 N
ATOM 20 N1 A A 16 -24.792 -27.850 9.127 1.00 16.52 N
ATOM 21 C2 A A 16 -23.768 -27.667 9.962 1.00 14.87 C
ATOM 22 N3 A A 16 -22.791 -28.506 10.308 1.00 12.80 N
ATOM 23 C4 A A 16 -22.927 -29.677 9.678 1.00 15.80 C
ATOM 24 P C A 17 -22.032 -33.842 14.239 1.00 9.89 P
ATOM 25 OP1 C A 17 -21.536 -34.490 15.480 1.00 7.72 O
ATOM 26 OP2 C A 17 -22.840 -34.630 13.280 1.00 10.96 O
ATOM 27 O5' C A 17 -22.897 -32.566 14.627 1.00 13.32 O
TER
ATOM 1 O3' G B 27 -35.367 -24.679 7.882 1.00 11.90 O
ATOM 2 P C B 28 -34.765 -23.858 6.645 1.00 12.71 P
ATOM 3 OP1 C B 28 -35.075 -22.425 6.852 1.00 8.15 O
ATOM 4 OP2 C B 28 -35.200 -24.537 5.390 1.00 6.75 O
ATOM 5 O5' C B 28 -33.201 -24.006 6.866 1.00 8.99 O
ATOM 6 C5' C B 28 -32.611 -23.403 7.999 1.00 10.61 C
ATOM 7 C4' C B 28 -31.133 -23.672 8.044 1.00 12.45 C
ATOM 8 O4' C B 28 -30.855 -25.050 8.376 1.00 12.52 O
ATOM 9 C3' C B 28 -30.372 -23.458 6.752 1.00 13.64 C
ATOM 10 O3' C B 28 -30.114 -22.091 6.548 1.00 16.68 O
ATOM 11 C2' C B 28 -29.086 -24.207 7.026 1.00 12.91 C
ATOM 12 O2' C B 28 -28.284 -23.446 7.885 1.00 12.43 O
ATOM 13 C1' C B 28 -29.607 -25.414 7.810 1.00 12.89 C
ATOM 14 N1 C B 28 -29.818 -26.585 6.962 1.00 15.50 N
ATOM 15 C2 C B 28 -28.781 -27.494 6.823 1.00 15.37 C
ATOM 16 O2 C B 28 -27.700 -27.254 7.389 1.00 17.62 O
ATOM 17 N3 C B 28 -28.972 -28.600 6.072 1.00 14.16 N
ATOM 18 C4 C B 28 -30.138 -28.792 5.459 1.00 14.61 C
ATOM 19 N4 C B 28 -30.285 -29.889 4.728 1.00 19.43 N
ATOM 20 C5 C B 28 -31.206 -27.865 5.568 1.00 15.46 C
ATOM 21 C6 C B 28 -31.008 -26.787 6.323 1.00 15.90 C
ATOM 22 P G B 29 -29.552 -21.613 5.137 1.00 20.31 P
ATOM 23 OP1 G B 29 -28.163 -22.140 5.109 1.00 20.96 O
ATOM 24 OP2 G B 29 -29.796 -20.149 4.991 1.00 18.98 O
ATOM 25 O5' G B 29 -30.432 -22.421 4.076 1.00 17.19 O
TER
ATOM 2 P A A 16 -21.700 -35.965 9.038 1.00 14.53 P
ATOM 3 OP1 A A 16 -21.455 -37.164 9.899 1.00 13.26 O
ATOM 4 OP2 A A 16 -23.026 -35.779 8.378 1.00 7.42 O
ATOM 5 O5' A A 16 -21.388 -34.643 9.879 1.00 13.49 O
ATOM 6 C5' A A 16 -20.098 -34.425 10.453 1.00 12.97 C
ATOM 7 C4' A A 16 -20.023 -33.054 11.077 1.00 11.54 C
ATOM 8 O4' A A 16 -20.174 -32.050 10.045 1.00 13.06 O
ATOM 9 C3' A A 16 -21.123 -32.734 12.071 1.00 11.54 C
ATOM 10 O3' A A 16 -20.836 -33.239 13.359 1.00 9.34 O
ATOM 11 C2' A A 16 -21.149 -31.220 12.048 1.00 13.26 C
ATOM 12 O2' A A 16 -20.076 -30.706 12.796 1.00 15.19 O
ATOM 13 C1' A A 16 -20.891 -30.940 10.565 1.00 15.35 C
ATOM 14 N9 A A 16 -22.107 -30.780 9.767 1.00 17.06 N
ATOM 15 C8 A A 16 -22.653 -31.717 8.935 1.00 19.80 C
ATOM 16 N7 A A 16 -23.739 -31.312 8.324 1.00 22.35 N
ATOM 17 C5 A A 16 -23.923 -30.017 8.787 1.00 18.21 C
ATOM 18 C6 A A 16 -24.905 -29.040 8.512 1.00 17.34 C
ATOM 19 N6 A A 16 -25.934 -29.229 7.687 1.00 16.08 N
ATOM 20 N1 A A 16 -24.792 -27.850 9.127 1.00 16.52 N
ATOM 21 C2 A A 16 -23.768 -27.667 9.962 1.00 14.87 C
ATOM 22 N3 A A 16 -22.791 -28.506 10.308 1.00 12.80 N
ATOM 23 C4 A A 16 -22.927 -29.677 9.678 1.00 15.80 C
ATOM 24 P C A 17 -22.032 -33.842 14.239 1.00 9.89 P
ATOM 25 OP1 C A 17 -21.536 -34.490 15.480 1.00 7.72 O
ATOM 26 OP2 C A 17 -22.840 -34.630 13.280 1.00 10.96 O
ATOM 27 O5' C A 17 -22.897 -32.566 14.627 1.00 13.32 O
TER
ATOM 1 O3' G B 27 -35.367 -24.679 7.882 1.00 11.90 O
ATOM 2 P C B 28 -34.765 -23.858 6.645 1.00 12.71 P
ATOM 3 OP1 C B 28 -35.075 -22.425 6.852 1.00 8.15 O
ATOM 4 OP2 C B 28 -35.200 -24.537 5.390 1.00 6.75 O
ATOM 5 O5' C B 28 -33.201 -24.006 6.866 1.00 8.99 O
ATOM 6 C5' C B 28 -32.611 -23.403 7.999 1.00 10.61 C
ATOM 7 C4' C B 28 -31.133 -23.672 8.044 1.00 12.45 C
ATOM 8 O4' C B 28 -30.855 -25.050 8.376 1.00 12.52 O
ATOM 9 C3' C B 28 -30.372 -23.458 6.752 1.00 13.64 C
ATOM 10 O3' C B 28 -30.114 -22.091 6.548 1.00 16.68 O
ATOM 11 C2' C B 28 -29.086 -24.207 7.026 1.00 12.91 C
ATOM 12 O2' C B 28 -28.284 -23.446 7.885 1.00 12.43 O
ATOM 13 C1' C B 28 -29.607 -25.414 7.810 1.00 12.89 C
ATOM 14 N1 C B 28 -29.818 -26.585 6.962 1.00 15.50 N
ATOM 15 C2 C B 28 -28.781 -27.494 6.823 1.00 15.37 C
ATOM 16 O2 C B 28 -27.700 -27.254 7.389 1.00 17.62 O
ATOM 17 N3 C B 28 -28.972 -28.600 6.072 1.00 14.16 N
ATOM 18 C4 C B 28 -30.138 -28.792 5.459 1.00 14.61 C
ATOM 19 N4 C B 28 -30.285 -29.889 4.728 1.00 19.43 N
ATOM 20 C5 C B 28 -31.206 -27.865 5.568 1.00 15.46 C
ATOM 21 C6 C B 28 -31.008 -26.787 6.323 1.00 15.90 C
ATOM 22 P G B 29 -29.552 -21.613 5.137 1.00 20.31 P
ATOM 23 OP1 G B 29 -28.163 -22.140 5.109 1.00 20.96 O
ATOM 24 OP2 G B 29 -29.796 -20.149 4.991 1.00 18.98 O
ATOM 25 O5' G B 29 -30.432 -22.421 4.076 1.00 17.19 O
TER
Atoms:
OP1: (-21.455,-37.164,9.899)
OP2: (-23.026,-35.779,8.378)
C3': (-21.123,-32.734,12.071)
C1': (-20.891,-30.940,10.565)
C5': (-20.098,-34.425,10.453)
O4': (-20.174,-32.050,10.045)
C8: (-22.653,-31.717,8.935)
O2': (-20.076,-30.706,12.796)
C6: (-24.905,-29.040,8.512)
C5: (-23.923,-30.017,8.787)
C4: (-22.927,-29.677,9.678)
P: (-21.700,-35.965,9.038)
C4': (-20.023,-33.054,11.077)
C2': (-21.149,-31.220,12.048)
C2: (-23.768,-27.667,9.962)
N1: (-24.792,-27.850,9.127)
N3: (-22.791,-28.506,10.308)
N6: (-25.934,-29.229,7.687)
N7: (-23.739,-31.312,8.324)
N9: (-22.107,-30.780,9.767)
O5': (-21.388,-34.643,9.879)
O3': (-20.836,-33.239,13.359)
OP2: (-23.026,-35.779,8.378)
C3': (-21.123,-32.734,12.071)
C1': (-20.891,-30.940,10.565)
C5': (-20.098,-34.425,10.453)
O4': (-20.174,-32.050,10.045)
C8: (-22.653,-31.717,8.935)
O2': (-20.076,-30.706,12.796)
C6: (-24.905,-29.040,8.512)
C5: (-23.923,-30.017,8.787)
C4: (-22.927,-29.677,9.678)
P: (-21.700,-35.965,9.038)
C4': (-20.023,-33.054,11.077)
C2': (-21.149,-31.220,12.048)
C2: (-23.768,-27.667,9.962)
N1: (-24.792,-27.850,9.127)
N3: (-22.791,-28.506,10.308)
N6: (-25.934,-29.229,7.687)
N7: (-23.739,-31.312,8.324)
N9: (-22.107,-30.780,9.767)
O5': (-21.388,-34.643,9.879)
O3': (-20.836,-33.239,13.359)
C2: (-28.781,-27.494,6.823)
OP1: (-35.075,-22.425,6.852)
OP2: (-35.200,-24.537,5.390)
C4: (-30.138,-28.792,5.459)
O5': (-33.201,-24.006,6.866)
C3': (-30.372,-23.458,6.752)
C1': (-29.607,-25.414,7.810)
O4': (-30.855,-25.050,8.376)
C5': (-32.611,-23.403,7.999)
P: (-34.765,-23.858,6.645)
O2: (-27.700,-27.254,7.389)
C4': (-31.133,-23.672,8.044)
C2': (-29.086,-24.207,7.026)
O2': (-28.284,-23.446,7.885)
N1: (-29.818,-26.585,6.962)
N3: (-28.972,-28.600,6.072)
N4: (-30.285,-29.889,4.728)
C6: (-31.008,-26.787,6.323)
C5: (-31.206,-27.865,5.568)
O3': (-30.114,-22.091,6.548)
OP1: (-35.075,-22.425,6.852)
OP2: (-35.200,-24.537,5.390)
C4: (-30.138,-28.792,5.459)
O5': (-33.201,-24.006,6.866)
C3': (-30.372,-23.458,6.752)
C1': (-29.607,-25.414,7.810)
O4': (-30.855,-25.050,8.376)
C5': (-32.611,-23.403,7.999)
P: (-34.765,-23.858,6.645)
O2: (-27.700,-27.254,7.389)
C4': (-31.133,-23.672,8.044)
C2': (-29.086,-24.207,7.026)
O2': (-28.284,-23.446,7.885)
N1: (-29.818,-26.585,6.962)
N3: (-28.972,-28.600,6.072)
N4: (-30.285,-29.889,4.728)
C6: (-31.008,-26.787,6.323)
C5: (-31.206,-27.865,5.568)
O3': (-30.114,-22.091,6.548)
Image (generated by PyMOL):