Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12313:12332
Extra
PDB:
ATOM 1 O3' C A2312 8.572 -1.441 166.502 1.00122.40 O
ATOM 2 P A A2313 7.136 -1.415 167.225 1.00 89.24 P
ATOM 3 OP1 A A2313 7.353 -1.878 168.629 1.00 90.05 O
ATOM 4 OP2 A A2313 6.167 -2.166 166.351 1.00 88.72 O
ATOM 5 O5' A A2313 6.776 0.128 167.210 1.00 89.41 O
ATOM 6 C5' A A2313 7.154 0.967 168.283 1.00 90.13 C
ATOM 7 C4' A A2313 5.955 1.558 168.985 1.00 90.75 C
ATOM 8 O4' A A2313 4.742 0.802 168.663 1.00 90.58 O
ATOM 9 C3' A A2313 6.055 1.559 170.501 1.00 91.71 C
ATOM 10 O3' A A2313 5.419 2.717 171.001 1.00 92.22 O
ATOM 11 C2' A A2313 5.247 0.332 170.879 1.00 91.89 C
ATOM 12 O2' A A2313 4.771 0.325 172.206 1.00 92.79 O
ATOM 13 C1' A A2313 4.119 0.421 169.868 1.00 91.37 C
ATOM 14 N9 A A2313 3.404 -0.833 169.671 1.00 91.19 N
ATOM 15 C8 A A2313 3.907 -2.073 169.398 1.00 90.84 C
ATOM 16 N7 A A2313 2.983 -3.002 169.325 1.00 90.81 N
ATOM 17 C5 A A2313 1.797 -2.327 169.584 1.00 91.16 C
ATOM 18 C6 A A2313 0.451 -2.750 169.649 1.00 91.32 C
ATOM 19 N6 A A2313 0.056 -4.015 169.456 1.00 91.14 N
ATOM 20 N1 A A2313 -0.480 -1.813 169.939 1.00 91.70 N
ATOM 21 C2 A A2313 -0.088 -0.545 170.134 1.00 91.90 C
ATOM 22 N3 A A2313 1.140 -0.031 170.093 1.00 91.78 N
ATOM 23 C4 A A2313 2.047 -0.986 169.811 1.00 91.41 C
ATOM 24 P A A2314 6.188 3.648 172.028 1.00 91.23 P
ATOM 25 OP1 A A2314 6.748 4.778 171.267 1.00 90.83 O
ATOM 26 OP2 A A2314 7.115 2.777 172.787 1.00 91.53 O
ATOM 27 O5' A A2314 5.007 4.152 172.969 1.00 92.02 O
TER
ATOM 1 O3' G B2331 -2.713 -8.094 171.117 1.00 82.26 O
ATOM 2 P A B2332 -2.984 -8.396 169.566 1.00 83.03 P
ATOM 3 OP1 A B2332 -2.421 -7.267 168.794 1.00 82.54 O
ATOM 4 OP2 A B2332 -4.417 -8.704 169.427 1.00 83.12 O
ATOM 5 O5' A B2332 -2.144 -9.703 169.308 1.00 82.70 O
ATOM 6 C5' A B2332 -2.509 -10.581 168.272 1.00 82.07 C
ATOM 7 C4' A B2332 -1.314 -11.026 167.503 1.00 81.43 C
ATOM 8 O4' A B2332 -0.538 -9.859 167.089 1.00 81.12 O
ATOM 9 C3' A B2332 -0.352 -11.928 168.264 1.00 81.75 C
ATOM 10 O3' A B2332 0.165 -12.893 167.356 1.00 81.10 O
ATOM 11 C2' A B2332 0.769 -10.964 168.669 1.00 81.90 C
ATOM 12 O2' A B2332 2.021 -11.578 168.917 1.00 81.89 O
ATOM 13 C1' A B2332 0.815 -10.051 167.451 1.00 81.18 C
ATOM 14 N9 A B2332 1.438 -8.741 167.680 1.00 81.31 N
ATOM 15 C8 A B2332 0.873 -7.623 168.224 1.00 81.77 C
ATOM 16 N7 A B2332 1.674 -6.581 168.283 1.00 81.77 N
ATOM 17 C5 A B2332 2.861 -7.034 167.728 1.00 81.27 C
ATOM 18 C6 A B2332 4.107 -6.407 167.503 1.00 81.04 C
ATOM 19 N6 A B2332 4.378 -5.142 167.815 1.00 81.29 N
ATOM 20 N1 A B2332 5.091 -7.135 166.936 1.00 80.55 N
ATOM 21 C2 A B2332 4.811 -8.407 166.614 1.00 80.31 C
ATOM 22 N3 A B2332 3.677 -9.105 166.773 1.00 80.49 N
ATOM 23 C4 A B2332 2.721 -8.358 167.345 1.00 80.98 C
ATOM 24 P U B2333 -0.379 -14.397 167.371 1.00 82.84 P
ATOM 25 OP1 U B2333 0.124 -15.055 166.120 1.00 82.02 O
ATOM 26 OP2 U B2333 -1.850 -14.340 167.626 1.00 83.18 O
ATOM 27 O5' U B2333 0.359 -14.987 168.637 1.00 83.53 O
TER
ATOM 2 P A A2313 7.136 -1.415 167.225 1.00 89.24 P
ATOM 3 OP1 A A2313 7.353 -1.878 168.629 1.00 90.05 O
ATOM 4 OP2 A A2313 6.167 -2.166 166.351 1.00 88.72 O
ATOM 5 O5' A A2313 6.776 0.128 167.210 1.00 89.41 O
ATOM 6 C5' A A2313 7.154 0.967 168.283 1.00 90.13 C
ATOM 7 C4' A A2313 5.955 1.558 168.985 1.00 90.75 C
ATOM 8 O4' A A2313 4.742 0.802 168.663 1.00 90.58 O
ATOM 9 C3' A A2313 6.055 1.559 170.501 1.00 91.71 C
ATOM 10 O3' A A2313 5.419 2.717 171.001 1.00 92.22 O
ATOM 11 C2' A A2313 5.247 0.332 170.879 1.00 91.89 C
ATOM 12 O2' A A2313 4.771 0.325 172.206 1.00 92.79 O
ATOM 13 C1' A A2313 4.119 0.421 169.868 1.00 91.37 C
ATOM 14 N9 A A2313 3.404 -0.833 169.671 1.00 91.19 N
ATOM 15 C8 A A2313 3.907 -2.073 169.398 1.00 90.84 C
ATOM 16 N7 A A2313 2.983 -3.002 169.325 1.00 90.81 N
ATOM 17 C5 A A2313 1.797 -2.327 169.584 1.00 91.16 C
ATOM 18 C6 A A2313 0.451 -2.750 169.649 1.00 91.32 C
ATOM 19 N6 A A2313 0.056 -4.015 169.456 1.00 91.14 N
ATOM 20 N1 A A2313 -0.480 -1.813 169.939 1.00 91.70 N
ATOM 21 C2 A A2313 -0.088 -0.545 170.134 1.00 91.90 C
ATOM 22 N3 A A2313 1.140 -0.031 170.093 1.00 91.78 N
ATOM 23 C4 A A2313 2.047 -0.986 169.811 1.00 91.41 C
ATOM 24 P A A2314 6.188 3.648 172.028 1.00 91.23 P
ATOM 25 OP1 A A2314 6.748 4.778 171.267 1.00 90.83 O
ATOM 26 OP2 A A2314 7.115 2.777 172.787 1.00 91.53 O
ATOM 27 O5' A A2314 5.007 4.152 172.969 1.00 92.02 O
TER
ATOM 1 O3' G B2331 -2.713 -8.094 171.117 1.00 82.26 O
ATOM 2 P A B2332 -2.984 -8.396 169.566 1.00 83.03 P
ATOM 3 OP1 A B2332 -2.421 -7.267 168.794 1.00 82.54 O
ATOM 4 OP2 A B2332 -4.417 -8.704 169.427 1.00 83.12 O
ATOM 5 O5' A B2332 -2.144 -9.703 169.308 1.00 82.70 O
ATOM 6 C5' A B2332 -2.509 -10.581 168.272 1.00 82.07 C
ATOM 7 C4' A B2332 -1.314 -11.026 167.503 1.00 81.43 C
ATOM 8 O4' A B2332 -0.538 -9.859 167.089 1.00 81.12 O
ATOM 9 C3' A B2332 -0.352 -11.928 168.264 1.00 81.75 C
ATOM 10 O3' A B2332 0.165 -12.893 167.356 1.00 81.10 O
ATOM 11 C2' A B2332 0.769 -10.964 168.669 1.00 81.90 C
ATOM 12 O2' A B2332 2.021 -11.578 168.917 1.00 81.89 O
ATOM 13 C1' A B2332 0.815 -10.051 167.451 1.00 81.18 C
ATOM 14 N9 A B2332 1.438 -8.741 167.680 1.00 81.31 N
ATOM 15 C8 A B2332 0.873 -7.623 168.224 1.00 81.77 C
ATOM 16 N7 A B2332 1.674 -6.581 168.283 1.00 81.77 N
ATOM 17 C5 A B2332 2.861 -7.034 167.728 1.00 81.27 C
ATOM 18 C6 A B2332 4.107 -6.407 167.503 1.00 81.04 C
ATOM 19 N6 A B2332 4.378 -5.142 167.815 1.00 81.29 N
ATOM 20 N1 A B2332 5.091 -7.135 166.936 1.00 80.55 N
ATOM 21 C2 A B2332 4.811 -8.407 166.614 1.00 80.31 C
ATOM 22 N3 A B2332 3.677 -9.105 166.773 1.00 80.49 N
ATOM 23 C4 A B2332 2.721 -8.358 167.345 1.00 80.98 C
ATOM 24 P U B2333 -0.379 -14.397 167.371 1.00 82.84 P
ATOM 25 OP1 U B2333 0.124 -15.055 166.120 1.00 82.02 O
ATOM 26 OP2 U B2333 -1.850 -14.340 167.626 1.00 83.18 O
ATOM 27 O5' U B2333 0.359 -14.987 168.637 1.00 83.53 O
TER
Atoms:
OP1: (7.353,-1.878,168.629)
OP2: (6.167,-2.166,166.351)
C3': (6.055,1.559,170.501)
C1': (4.119,0.421,169.868)
C5': (7.154,0.967,168.283)
O4': (4.742,0.802,168.663)
C8: (3.907,-2.073,169.398)
O2': (4.771,0.325,172.206)
C6: (0.451,-2.750,169.649)
C5: (1.797,-2.327,169.584)
C4: (2.047,-0.986,169.811)
P: (7.136,-1.415,167.225)
C4': (5.955,1.558,168.985)
C2': (5.247,0.332,170.879)
C2: (-0.088,-0.545,170.134)
N1: (-0.480,-1.813,169.939)
N3: (1.140,-0.031,170.093)
N6: (0.056,-4.015,169.456)
N7: (2.983,-3.002,169.325)
N9: (3.404,-0.833,169.671)
O5': (6.776,0.128,167.210)
O3': (5.419,2.717,171.001)
OP2: (6.167,-2.166,166.351)
C3': (6.055,1.559,170.501)
C1': (4.119,0.421,169.868)
C5': (7.154,0.967,168.283)
O4': (4.742,0.802,168.663)
C8: (3.907,-2.073,169.398)
O2': (4.771,0.325,172.206)
C6: (0.451,-2.750,169.649)
C5: (1.797,-2.327,169.584)
C4: (2.047,-0.986,169.811)
P: (7.136,-1.415,167.225)
C4': (5.955,1.558,168.985)
C2': (5.247,0.332,170.879)
C2: (-0.088,-0.545,170.134)
N1: (-0.480,-1.813,169.939)
N3: (1.140,-0.031,170.093)
N6: (0.056,-4.015,169.456)
N7: (2.983,-3.002,169.325)
N9: (3.404,-0.833,169.671)
O5': (6.776,0.128,167.210)
O3': (5.419,2.717,171.001)
OP1: (-2.421,-7.267,168.794)
OP2: (-4.417,-8.704,169.427)
C3': (-0.352,-11.928,168.264)
C1': (0.815,-10.051,167.451)
C5': (-2.509,-10.581,168.272)
O4': (-0.538,-9.859,167.089)
C8: (0.873,-7.623,168.224)
O2': (2.021,-11.578,168.917)
C6: (4.107,-6.407,167.503)
C5: (2.861,-7.034,167.728)
C4: (2.721,-8.358,167.345)
P: (-2.984,-8.396,169.566)
C4': (-1.314,-11.026,167.503)
C2': (0.769,-10.964,168.669)
C2: (4.811,-8.407,166.614)
N1: (5.091,-7.135,166.936)
N3: (3.677,-9.105,166.773)
N6: (4.378,-5.142,167.815)
N7: (1.674,-6.581,168.283)
N9: (1.438,-8.741,167.680)
O5': (-2.144,-9.703,169.308)
O3': (0.165,-12.893,167.356)
OP2: (-4.417,-8.704,169.427)
C3': (-0.352,-11.928,168.264)
C1': (0.815,-10.051,167.451)
C5': (-2.509,-10.581,168.272)
O4': (-0.538,-9.859,167.089)
C8: (0.873,-7.623,168.224)
O2': (2.021,-11.578,168.917)
C6: (4.107,-6.407,167.503)
C5: (2.861,-7.034,167.728)
C4: (2.721,-8.358,167.345)
P: (-2.984,-8.396,169.566)
C4': (-1.314,-11.026,167.503)
C2': (0.769,-10.964,168.669)
C2: (4.811,-8.407,166.614)
N1: (5.091,-7.135,166.936)
N3: (3.677,-9.105,166.773)
N6: (4.378,-5.142,167.815)
N7: (1.674,-6.581,168.283)
N9: (1.438,-8.741,167.680)
O5': (-2.144,-9.703,169.308)
O3': (0.165,-12.893,167.356)
Image (generated by PyMOL):