Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1JBR:C9:F3
Extra
PDB:
ATOM 1 O3' C A 8 25.070 1.692 -9.928 1.00 54.90 O
ATOM 2 P A A 9 23.956 0.706 -9.304 1.00 58.59 P
ATOM 3 OP1 A A 9 24.673 -0.167 -8.332 1.00 59.54 O
ATOM 4 OP2 A A 9 23.223 0.098 -10.447 1.00 59.80 O
ATOM 5 O5' A A 9 22.931 1.627 -8.500 1.00 55.99 O
ATOM 6 C5' A A 9 21.542 1.297 -8.480 1.00 56.25 C
ATOM 7 C4' A A 9 20.802 2.049 -7.389 1.00 55.45 C
ATOM 8 O4' A A 9 21.480 1.873 -6.107 1.00 54.39 O
ATOM 9 C3' A A 9 20.742 3.561 -7.603 1.00 55.36 C
ATOM 10 O3' A A 9 19.595 4.111 -6.943 1.00 59.44 O
ATOM 11 C2' A A 9 22.026 4.034 -6.925 1.00 54.51 C
ATOM 12 O2' A A 9 21.995 5.387 -6.514 1.00 55.10 O
ATOM 13 C1' A A 9 22.070 3.100 -5.715 1.00 53.23 C
ATOM 14 N9 A A 9 23.371 2.875 -5.078 1.00 49.02 N
ATOM 15 C8 A A 9 24.445 2.144 -5.519 1.00 48.43 C
ATOM 16 N7 A A 9 25.479 2.182 -4.709 1.00 44.34 N
ATOM 17 C5 A A 9 25.053 2.983 -3.662 1.00 45.69 C
ATOM 18 C6 A A 9 25.682 3.409 -2.485 1.00 45.59 C
ATOM 19 N6 A A 9 26.934 3.081 -2.153 1.00 44.83 N
ATOM 20 N1 A A 9 24.976 4.200 -1.648 1.00 44.10 N
ATOM 21 C2 A A 9 23.728 4.533 -1.983 1.00 44.12 C
ATOM 22 N3 A A 9 23.030 4.199 -3.056 1.00 45.14 N
ATOM 23 C4 A A 9 23.757 3.413 -3.870 1.00 47.35 C
ATOM 24 P G A 10 18.240 4.389 -7.772 1.00 60.80 P
ATOM 25 OP1 G A 10 18.247 3.490 -8.953 1.00 62.26 O
ATOM 26 OP2 G A 10 18.102 5.850 -7.973 1.00 59.44 O
ATOM 27 O5' G A 10 17.071 3.919 -6.794 1.00 62.63 O
TER
ATOM 1 O3' A B 2 29.192 3.167 1.777 1.00 47.79 O
ATOM 2 P A B 3 29.804 4.187 0.698 1.00 51.59 P
ATOM 3 OP1 A B 3 30.189 5.441 1.394 1.00 53.11 O
ATOM 4 OP2 A B 3 28.877 4.248 -0.464 1.00 50.01 O
ATOM 5 O5' A B 3 31.155 3.491 0.213 1.00 52.15 O
ATOM 6 C5' A B 3 31.806 2.496 1.006 1.00 51.45 C
ATOM 7 C4' A B 3 32.479 1.470 0.125 1.00 50.57 C
ATOM 8 O4' A B 3 31.512 0.477 -0.297 1.00 52.24 O
ATOM 9 C3' A B 3 33.103 1.974 -1.167 1.00 52.37 C
ATOM 10 O3' A B 3 34.419 2.450 -0.914 1.00 52.62 O
ATOM 11 C2' A B 3 33.126 0.717 -2.031 1.00 52.18 C
ATOM 12 O2' A B 3 34.239 -0.110 -1.760 1.00 55.26 O
ATOM 13 C1' A B 3 31.841 0.013 -1.595 1.00 52.05 C
ATOM 14 N9 A B 3 30.694 0.235 -2.474 1.00 50.71 N
ATOM 15 C8 A B 3 29.653 1.114 -2.305 1.00 50.69 C
ATOM 16 N7 A B 3 28.759 1.067 -3.264 1.00 51.11 N
ATOM 17 C5 A B 3 29.246 0.095 -4.124 1.00 50.07 C
ATOM 18 C6 A B 3 28.755 -0.426 -5.332 1.00 50.98 C
ATOM 19 N6 A B 3 27.619 -0.023 -5.903 1.00 49.26 N
ATOM 20 N1 A B 3 29.481 -1.388 -5.940 1.00 51.05 N
ATOM 21 C2 A B 3 30.621 -1.792 -5.363 1.00 51.42 C
ATOM 22 N3 A B 3 31.185 -1.379 -4.229 1.00 51.33 N
ATOM 23 C4 A B 3 30.438 -0.424 -3.651 1.00 50.69 C
ATOM 24 P C B 4 35.152 3.388 -1.990 1.00 54.46 P
ATOM 25 OP1 C B 4 36.471 3.760 -1.416 1.00 55.15 O
ATOM 26 OP2 C B 4 34.211 4.454 -2.402 1.00 56.02 O
ATOM 27 O5' C B 4 35.394 2.428 -3.239 1.00 55.77 O
TER
ATOM 2 P A A 9 23.956 0.706 -9.304 1.00 58.59 P
ATOM 3 OP1 A A 9 24.673 -0.167 -8.332 1.00 59.54 O
ATOM 4 OP2 A A 9 23.223 0.098 -10.447 1.00 59.80 O
ATOM 5 O5' A A 9 22.931 1.627 -8.500 1.00 55.99 O
ATOM 6 C5' A A 9 21.542 1.297 -8.480 1.00 56.25 C
ATOM 7 C4' A A 9 20.802 2.049 -7.389 1.00 55.45 C
ATOM 8 O4' A A 9 21.480 1.873 -6.107 1.00 54.39 O
ATOM 9 C3' A A 9 20.742 3.561 -7.603 1.00 55.36 C
ATOM 10 O3' A A 9 19.595 4.111 -6.943 1.00 59.44 O
ATOM 11 C2' A A 9 22.026 4.034 -6.925 1.00 54.51 C
ATOM 12 O2' A A 9 21.995 5.387 -6.514 1.00 55.10 O
ATOM 13 C1' A A 9 22.070 3.100 -5.715 1.00 53.23 C
ATOM 14 N9 A A 9 23.371 2.875 -5.078 1.00 49.02 N
ATOM 15 C8 A A 9 24.445 2.144 -5.519 1.00 48.43 C
ATOM 16 N7 A A 9 25.479 2.182 -4.709 1.00 44.34 N
ATOM 17 C5 A A 9 25.053 2.983 -3.662 1.00 45.69 C
ATOM 18 C6 A A 9 25.682 3.409 -2.485 1.00 45.59 C
ATOM 19 N6 A A 9 26.934 3.081 -2.153 1.00 44.83 N
ATOM 20 N1 A A 9 24.976 4.200 -1.648 1.00 44.10 N
ATOM 21 C2 A A 9 23.728 4.533 -1.983 1.00 44.12 C
ATOM 22 N3 A A 9 23.030 4.199 -3.056 1.00 45.14 N
ATOM 23 C4 A A 9 23.757 3.413 -3.870 1.00 47.35 C
ATOM 24 P G A 10 18.240 4.389 -7.772 1.00 60.80 P
ATOM 25 OP1 G A 10 18.247 3.490 -8.953 1.00 62.26 O
ATOM 26 OP2 G A 10 18.102 5.850 -7.973 1.00 59.44 O
ATOM 27 O5' G A 10 17.071 3.919 -6.794 1.00 62.63 O
TER
ATOM 1 O3' A B 2 29.192 3.167 1.777 1.00 47.79 O
ATOM 2 P A B 3 29.804 4.187 0.698 1.00 51.59 P
ATOM 3 OP1 A B 3 30.189 5.441 1.394 1.00 53.11 O
ATOM 4 OP2 A B 3 28.877 4.248 -0.464 1.00 50.01 O
ATOM 5 O5' A B 3 31.155 3.491 0.213 1.00 52.15 O
ATOM 6 C5' A B 3 31.806 2.496 1.006 1.00 51.45 C
ATOM 7 C4' A B 3 32.479 1.470 0.125 1.00 50.57 C
ATOM 8 O4' A B 3 31.512 0.477 -0.297 1.00 52.24 O
ATOM 9 C3' A B 3 33.103 1.974 -1.167 1.00 52.37 C
ATOM 10 O3' A B 3 34.419 2.450 -0.914 1.00 52.62 O
ATOM 11 C2' A B 3 33.126 0.717 -2.031 1.00 52.18 C
ATOM 12 O2' A B 3 34.239 -0.110 -1.760 1.00 55.26 O
ATOM 13 C1' A B 3 31.841 0.013 -1.595 1.00 52.05 C
ATOM 14 N9 A B 3 30.694 0.235 -2.474 1.00 50.71 N
ATOM 15 C8 A B 3 29.653 1.114 -2.305 1.00 50.69 C
ATOM 16 N7 A B 3 28.759 1.067 -3.264 1.00 51.11 N
ATOM 17 C5 A B 3 29.246 0.095 -4.124 1.00 50.07 C
ATOM 18 C6 A B 3 28.755 -0.426 -5.332 1.00 50.98 C
ATOM 19 N6 A B 3 27.619 -0.023 -5.903 1.00 49.26 N
ATOM 20 N1 A B 3 29.481 -1.388 -5.940 1.00 51.05 N
ATOM 21 C2 A B 3 30.621 -1.792 -5.363 1.00 51.42 C
ATOM 22 N3 A B 3 31.185 -1.379 -4.229 1.00 51.33 N
ATOM 23 C4 A B 3 30.438 -0.424 -3.651 1.00 50.69 C
ATOM 24 P C B 4 35.152 3.388 -1.990 1.00 54.46 P
ATOM 25 OP1 C B 4 36.471 3.760 -1.416 1.00 55.15 O
ATOM 26 OP2 C B 4 34.211 4.454 -2.402 1.00 56.02 O
ATOM 27 O5' C B 4 35.394 2.428 -3.239 1.00 55.77 O
TER
Atoms:
OP1: (24.673,-0.167,-8.332)
OP2: (23.223,0.098,-10.447)
C3': (20.742,3.561,-7.603)
C1': (22.070,3.100,-5.715)
C5': (21.542,1.297,-8.480)
O4': (21.480,1.873,-6.107)
C8: (24.445,2.144,-5.519)
O2': (21.995,5.387,-6.514)
C6: (25.682,3.409,-2.485)
C5: (25.053,2.983,-3.662)
C4: (23.757,3.413,-3.870)
P: (23.956,0.706,-9.304)
C4': (20.802,2.049,-7.389)
C2': (22.026,4.034,-6.925)
C2: (23.728,4.533,-1.983)
N1: (24.976,4.200,-1.648)
N3: (23.030,4.199,-3.056)
N6: (26.934,3.081,-2.153)
N7: (25.479,2.182,-4.709)
N9: (23.371,2.875,-5.078)
O5': (22.931,1.627,-8.500)
O3': (19.595,4.111,-6.943)
OP2: (23.223,0.098,-10.447)
C3': (20.742,3.561,-7.603)
C1': (22.070,3.100,-5.715)
C5': (21.542,1.297,-8.480)
O4': (21.480,1.873,-6.107)
C8: (24.445,2.144,-5.519)
O2': (21.995,5.387,-6.514)
C6: (25.682,3.409,-2.485)
C5: (25.053,2.983,-3.662)
C4: (23.757,3.413,-3.870)
P: (23.956,0.706,-9.304)
C4': (20.802,2.049,-7.389)
C2': (22.026,4.034,-6.925)
C2: (23.728,4.533,-1.983)
N1: (24.976,4.200,-1.648)
N3: (23.030,4.199,-3.056)
N6: (26.934,3.081,-2.153)
N7: (25.479,2.182,-4.709)
N9: (23.371,2.875,-5.078)
O5': (22.931,1.627,-8.500)
O3': (19.595,4.111,-6.943)
OP1: (30.189,5.441,1.394)
OP2: (28.877,4.248,-0.464)
C3': (33.103,1.974,-1.167)
C1': (31.841,0.013,-1.595)
C5': (31.806,2.496,1.006)
O4': (31.512,0.477,-0.297)
C8: (29.653,1.114,-2.305)
O2': (34.239,-0.110,-1.760)
C6: (28.755,-0.426,-5.332)
C5: (29.246,0.095,-4.124)
C4: (30.438,-0.424,-3.651)
P: (29.804,4.187,0.698)
C4': (32.479,1.470,0.125)
C2': (33.126,0.717,-2.031)
C2: (30.621,-1.792,-5.363)
N1: (29.481,-1.388,-5.940)
N3: (31.185,-1.379,-4.229)
N6: (27.619,-0.023,-5.903)
N7: (28.759,1.067,-3.264)
N9: (30.694,0.235,-2.474)
O5': (31.155,3.491,0.213)
O3': (34.419,2.450,-0.914)
OP2: (28.877,4.248,-0.464)
C3': (33.103,1.974,-1.167)
C1': (31.841,0.013,-1.595)
C5': (31.806,2.496,1.006)
O4': (31.512,0.477,-0.297)
C8: (29.653,1.114,-2.305)
O2': (34.239,-0.110,-1.760)
C6: (28.755,-0.426,-5.332)
C5: (29.246,0.095,-4.124)
C4: (30.438,-0.424,-3.651)
P: (29.804,4.187,0.698)
C4': (32.479,1.470,0.125)
C2': (33.126,0.717,-2.031)
C2: (30.621,-1.792,-5.363)
N1: (29.481,-1.388,-5.940)
N3: (31.185,-1.379,-4.229)
N6: (27.619,-0.023,-5.903)
N7: (28.759,1.067,-3.264)
N9: (30.694,0.235,-2.474)
O5': (31.155,3.491,0.213)
O3': (34.419,2.450,-0.914)
Image (generated by PyMOL):