Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12408:12467
Extra
PDB:
ATOM 1 O3' U A2407 10.371 -69.424 61.537 1.00 59.91 O
ATOM 2 P A A2408 9.005 -69.417 60.697 1.00 51.67 P
ATOM 3 OP1 A A2408 7.994 -68.754 61.530 1.00 51.50 O
ATOM 4 OP2 A A2408 8.776 -70.782 60.256 1.00 52.25 O
ATOM 5 O5' A A2408 9.353 -68.505 59.450 1.00 51.38 O
ATOM 6 C5' A A2408 9.936 -69.036 58.273 1.00 51.60 C
ATOM 7 C4' A A2408 10.527 -67.930 57.453 1.00 51.20 C
ATOM 8 O4' A A2408 11.622 -67.339 58.209 1.00 50.77 O
ATOM 9 C3' A A2408 11.126 -68.334 56.104 1.00 51.40 C
ATOM 10 O3' A A2408 11.159 -67.182 55.237 1.00 51.07 O
ATOM 11 C2' A A2408 12.562 -68.632 56.495 1.00 51.29 C
ATOM 12 O2' A A2408 13.473 -68.600 55.413 1.00 51.28 O
ATOM 13 C1' A A2408 12.819 -67.479 57.474 1.00 50.74 C
ATOM 14 N9 A A2408 13.950 -67.697 58.390 1.00 50.61 N
ATOM 15 C8 A A2408 14.906 -66.754 58.665 1.00 50.14 C
ATOM 16 N7 A A2408 15.893 -67.148 59.435 1.00 50.11 N
ATOM 17 C5 A A2408 15.571 -68.461 59.675 1.00 50.60 C
ATOM 18 C6 A A2408 16.237 -69.417 60.419 1.00 50.83 C
ATOM 19 N6 A A2408 17.353 -69.176 61.068 1.00 50.58 N
ATOM 20 N1 A A2408 15.679 -70.626 60.479 1.00 51.34 N
ATOM 21 C2 A A2408 14.548 -70.837 59.811 1.00 51.59 C
ATOM 22 N3 A A2408 13.839 -70.019 59.061 1.00 51.42 N
ATOM 23 C4 A A2408 14.394 -68.825 59.039 1.00 50.91 C
ATOM 24 P A A2409 9.877 -66.704 54.384 1.00 55.67 P
ATOM 25 OP1 A A2409 8.970 -66.010 55.331 1.00 55.44 O
ATOM 26 OP2 A A2409 9.372 -67.890 53.617 1.00 56.26 O
ATOM 27 O5' A A2409 10.519 -65.630 53.382 1.00 55.32 O
TER
ATOM 1 O3' G B2466 24.314 -70.923 58.834 1.00 55.16 O
ATOM 2 P A B2467 23.139 -69.895 59.078 1.00 54.34 P
ATOM 3 OP1 A B2467 21.952 -70.678 59.426 1.00 54.70 O
ATOM 4 OP2 A B2467 23.115 -69.005 57.882 1.00 54.10 O
ATOM 5 O5' A B2467 23.602 -69.079 60.360 1.00 53.91 O
ATOM 6 C5' A B2467 24.594 -68.068 60.285 1.00 53.47 C
ATOM 7 C4' A B2467 24.499 -67.115 61.447 1.00 53.06 C
ATOM 8 O4' A B2467 23.309 -66.294 61.298 1.00 52.85 O
ATOM 9 C3' A B2467 24.383 -67.767 62.816 1.00 53.23 C
ATOM 10 O3' A B2467 24.914 -66.877 63.794 1.00 52.83 O
ATOM 11 C2' A B2467 22.876 -67.826 62.999 1.00 53.34 C
ATOM 12 O2' A B2467 22.464 -67.958 64.332 1.00 53.36 O
ATOM 13 C1' A B2467 22.474 -66.479 62.423 1.00 52.92 C
ATOM 14 N9 A B2467 21.087 -66.382 61.971 1.00 53.01 N
ATOM 15 C8 A B2467 20.516 -67.031 60.884 1.00 53.36 C
ATOM 16 N7 A B2467 19.264 -66.680 60.655 1.00 53.36 N
ATOM 17 C5 A B2467 18.997 -65.720 61.640 1.00 52.98 C
ATOM 18 C6 A B2467 17.866 -64.962 61.949 1.00 52.80 C
ATOM 19 N6 A B2467 16.734 -65.052 61.276 1.00 52.98 N
ATOM 20 N1 A B2467 17.921 -64.106 62.982 1.00 52.44 N
ATOM 21 C2 A B2467 19.049 -63.999 63.666 1.00 52.27 C
ATOM 22 N3 A B2467 20.179 -64.649 63.469 1.00 52.40 N
ATOM 23 C4 A B2467 20.110 -65.507 62.440 1.00 52.76 C
ATOM 24 P U B2468 26.495 -66.823 64.114 1.00 49.61 P
ATOM 25 OP1 U B2468 26.698 -65.682 65.061 1.00 49.16 O
ATOM 26 OP2 U B2468 27.220 -66.816 62.804 1.00 49.63 O
ATOM 27 O5' U B2468 26.763 -68.211 64.869 1.00 50.07 O
TER
ATOM 2 P A A2408 9.005 -69.417 60.697 1.00 51.67 P
ATOM 3 OP1 A A2408 7.994 -68.754 61.530 1.00 51.50 O
ATOM 4 OP2 A A2408 8.776 -70.782 60.256 1.00 52.25 O
ATOM 5 O5' A A2408 9.353 -68.505 59.450 1.00 51.38 O
ATOM 6 C5' A A2408 9.936 -69.036 58.273 1.00 51.60 C
ATOM 7 C4' A A2408 10.527 -67.930 57.453 1.00 51.20 C
ATOM 8 O4' A A2408 11.622 -67.339 58.209 1.00 50.77 O
ATOM 9 C3' A A2408 11.126 -68.334 56.104 1.00 51.40 C
ATOM 10 O3' A A2408 11.159 -67.182 55.237 1.00 51.07 O
ATOM 11 C2' A A2408 12.562 -68.632 56.495 1.00 51.29 C
ATOM 12 O2' A A2408 13.473 -68.600 55.413 1.00 51.28 O
ATOM 13 C1' A A2408 12.819 -67.479 57.474 1.00 50.74 C
ATOM 14 N9 A A2408 13.950 -67.697 58.390 1.00 50.61 N
ATOM 15 C8 A A2408 14.906 -66.754 58.665 1.00 50.14 C
ATOM 16 N7 A A2408 15.893 -67.148 59.435 1.00 50.11 N
ATOM 17 C5 A A2408 15.571 -68.461 59.675 1.00 50.60 C
ATOM 18 C6 A A2408 16.237 -69.417 60.419 1.00 50.83 C
ATOM 19 N6 A A2408 17.353 -69.176 61.068 1.00 50.58 N
ATOM 20 N1 A A2408 15.679 -70.626 60.479 1.00 51.34 N
ATOM 21 C2 A A2408 14.548 -70.837 59.811 1.00 51.59 C
ATOM 22 N3 A A2408 13.839 -70.019 59.061 1.00 51.42 N
ATOM 23 C4 A A2408 14.394 -68.825 59.039 1.00 50.91 C
ATOM 24 P A A2409 9.877 -66.704 54.384 1.00 55.67 P
ATOM 25 OP1 A A2409 8.970 -66.010 55.331 1.00 55.44 O
ATOM 26 OP2 A A2409 9.372 -67.890 53.617 1.00 56.26 O
ATOM 27 O5' A A2409 10.519 -65.630 53.382 1.00 55.32 O
TER
ATOM 1 O3' G B2466 24.314 -70.923 58.834 1.00 55.16 O
ATOM 2 P A B2467 23.139 -69.895 59.078 1.00 54.34 P
ATOM 3 OP1 A B2467 21.952 -70.678 59.426 1.00 54.70 O
ATOM 4 OP2 A B2467 23.115 -69.005 57.882 1.00 54.10 O
ATOM 5 O5' A B2467 23.602 -69.079 60.360 1.00 53.91 O
ATOM 6 C5' A B2467 24.594 -68.068 60.285 1.00 53.47 C
ATOM 7 C4' A B2467 24.499 -67.115 61.447 1.00 53.06 C
ATOM 8 O4' A B2467 23.309 -66.294 61.298 1.00 52.85 O
ATOM 9 C3' A B2467 24.383 -67.767 62.816 1.00 53.23 C
ATOM 10 O3' A B2467 24.914 -66.877 63.794 1.00 52.83 O
ATOM 11 C2' A B2467 22.876 -67.826 62.999 1.00 53.34 C
ATOM 12 O2' A B2467 22.464 -67.958 64.332 1.00 53.36 O
ATOM 13 C1' A B2467 22.474 -66.479 62.423 1.00 52.92 C
ATOM 14 N9 A B2467 21.087 -66.382 61.971 1.00 53.01 N
ATOM 15 C8 A B2467 20.516 -67.031 60.884 1.00 53.36 C
ATOM 16 N7 A B2467 19.264 -66.680 60.655 1.00 53.36 N
ATOM 17 C5 A B2467 18.997 -65.720 61.640 1.00 52.98 C
ATOM 18 C6 A B2467 17.866 -64.962 61.949 1.00 52.80 C
ATOM 19 N6 A B2467 16.734 -65.052 61.276 1.00 52.98 N
ATOM 20 N1 A B2467 17.921 -64.106 62.982 1.00 52.44 N
ATOM 21 C2 A B2467 19.049 -63.999 63.666 1.00 52.27 C
ATOM 22 N3 A B2467 20.179 -64.649 63.469 1.00 52.40 N
ATOM 23 C4 A B2467 20.110 -65.507 62.440 1.00 52.76 C
ATOM 24 P U B2468 26.495 -66.823 64.114 1.00 49.61 P
ATOM 25 OP1 U B2468 26.698 -65.682 65.061 1.00 49.16 O
ATOM 26 OP2 U B2468 27.220 -66.816 62.804 1.00 49.63 O
ATOM 27 O5' U B2468 26.763 -68.211 64.869 1.00 50.07 O
TER
Atoms:
OP1: (7.994,-68.754,61.530)
OP2: (8.776,-70.782,60.256)
C3': (11.126,-68.334,56.104)
C1': (12.819,-67.479,57.474)
C5': (9.936,-69.036,58.273)
O4': (11.622,-67.339,58.209)
C8: (14.906,-66.754,58.665)
O2': (13.473,-68.600,55.413)
C6: (16.237,-69.417,60.419)
C5: (15.571,-68.461,59.675)
C4: (14.394,-68.825,59.039)
P: (9.005,-69.417,60.697)
C4': (10.527,-67.930,57.453)
C2': (12.562,-68.632,56.495)
C2: (14.548,-70.837,59.811)
N1: (15.679,-70.626,60.479)
N3: (13.839,-70.019,59.061)
N6: (17.353,-69.176,61.068)
N7: (15.893,-67.148,59.435)
N9: (13.950,-67.697,58.390)
O5': (9.353,-68.505,59.450)
O3': (11.159,-67.182,55.237)
OP2: (8.776,-70.782,60.256)
C3': (11.126,-68.334,56.104)
C1': (12.819,-67.479,57.474)
C5': (9.936,-69.036,58.273)
O4': (11.622,-67.339,58.209)
C8: (14.906,-66.754,58.665)
O2': (13.473,-68.600,55.413)
C6: (16.237,-69.417,60.419)
C5: (15.571,-68.461,59.675)
C4: (14.394,-68.825,59.039)
P: (9.005,-69.417,60.697)
C4': (10.527,-67.930,57.453)
C2': (12.562,-68.632,56.495)
C2: (14.548,-70.837,59.811)
N1: (15.679,-70.626,60.479)
N3: (13.839,-70.019,59.061)
N6: (17.353,-69.176,61.068)
N7: (15.893,-67.148,59.435)
N9: (13.950,-67.697,58.390)
O5': (9.353,-68.505,59.450)
O3': (11.159,-67.182,55.237)
OP1: (21.952,-70.678,59.426)
OP2: (23.115,-69.005,57.882)
C3': (24.383,-67.767,62.816)
C1': (22.474,-66.479,62.423)
C5': (24.594,-68.068,60.285)
O4': (23.309,-66.294,61.298)
C8: (20.516,-67.031,60.884)
O2': (22.464,-67.958,64.332)
C6: (17.866,-64.962,61.949)
C5: (18.997,-65.720,61.640)
C4: (20.110,-65.507,62.440)
P: (23.139,-69.895,59.078)
C4': (24.499,-67.115,61.447)
C2': (22.876,-67.826,62.999)
C2: (19.049,-63.999,63.666)
N1: (17.921,-64.106,62.982)
N3: (20.179,-64.649,63.469)
N6: (16.734,-65.052,61.276)
N7: (19.264,-66.680,60.655)
N9: (21.087,-66.382,61.971)
O5': (23.602,-69.079,60.360)
O3': (24.914,-66.877,63.794)
OP2: (23.115,-69.005,57.882)
C3': (24.383,-67.767,62.816)
C1': (22.474,-66.479,62.423)
C5': (24.594,-68.068,60.285)
O4': (23.309,-66.294,61.298)
C8: (20.516,-67.031,60.884)
O2': (22.464,-67.958,64.332)
C6: (17.866,-64.962,61.949)
C5: (18.997,-65.720,61.640)
C4: (20.110,-65.507,62.440)
P: (23.139,-69.895,59.078)
C4': (24.499,-67.115,61.447)
C2': (22.876,-67.826,62.999)
C2: (19.049,-63.999,63.666)
N1: (17.921,-64.106,62.982)
N3: (20.179,-64.649,63.469)
N6: (16.734,-65.052,61.276)
N7: (19.264,-66.680,60.655)
N9: (21.087,-66.382,61.971)
O5': (23.602,-69.079,60.360)
O3': (24.914,-66.877,63.794)
Image (generated by PyMOL):