Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1197:A1234
Extra
PDB:
ATOM 1 O3' U A1196 -66.642-109.072 57.049 1.00 0.01 O
ATOM 2 P A A1197 -65.567-110.182 56.698 1.00 0.01 P
ATOM 3 OP1 A A1197 -65.901-110.715 55.365 1.00 0.01 O
ATOM 4 OP2 A A1197 -65.524-111.099 57.855 1.00 0.01 O
ATOM 5 O5' A A1197 -64.223-109.392 56.632 1.00 0.01 O
ATOM 6 C5' A A1197 -63.013-110.082 56.792 1.00 0.01 C
ATOM 7 C4' A A1197 -61.943-109.475 55.967 1.00 0.01 C
ATOM 8 O4' A A1197 -62.300-109.579 54.560 1.00 0.01 O
ATOM 9 C3' A A1197 -61.718-107.993 56.227 1.00 0.01 C
ATOM 10 O3' A A1197 -60.345-107.704 55.997 1.00 0.01 O
ATOM 11 C2' A A1197 -62.550-107.340 55.136 1.00 0.01 C
ATOM 12 O2' A A1197 -62.169-106.027 54.837 1.00 0.01 O
ATOM 13 C1' A A1197 -62.244-108.280 53.988 1.00 0.01 C
ATOM 14 N9 A A1197 -63.155-108.202 52.842 1.00 0.01 N
ATOM 15 C8 A A1197 -64.366-108.799 52.618 1.00 0.01 C
ATOM 16 N7 A A1197 -64.901-108.541 51.444 1.00 0.01 N
ATOM 17 C5 A A1197 -63.962-107.725 50.835 1.00 0.01 C
ATOM 18 C6 A A1197 -63.923-107.111 49.569 1.00 0.01 C
ATOM 19 N6 A A1197 -64.885-107.200 48.649 1.00 0.01 N
ATOM 20 N1 A A1197 -62.850-106.355 49.300 1.00 0.01 N
ATOM 21 C2 A A1197 -61.895-106.243 50.220 1.00 0.01 C
ATOM 22 N3 A A1197 -61.818-106.777 51.434 1.00 0.01 N
ATOM 23 C4 A A1197 -62.891-107.519 51.687 1.00 0.01 C
ATOM 24 P A A1198 -59.402-107.286 57.204 1.00 0.13 P
ATOM 25 OP1 A A1198 -60.265-107.186 58.410 1.00 0.13 O
ATOM 26 OP2 A A1198 -58.659-106.110 56.755 1.00 0.13 O
ATOM 27 O5' A A1198 -58.414-108.521 57.342 1.00 0.13 O
TER
ATOM 1 O3' U B1233 -65.096-106.685 43.483 1.00 0.01 O
ATOM 2 P A B1234 -66.345-106.763 44.467 1.00 0.01 P
ATOM 3 OP1 A B1234 -67.424-105.965 43.864 1.00 0.01 O
ATOM 4 OP2 A B1234 -65.845-106.387 45.809 1.00 0.01 O
ATOM 5 O5' A B1234 -66.753-108.298 44.413 1.00 0.01 O
ATOM 6 C5' A B1234 -67.127-108.905 43.185 1.00 0.01 C
ATOM 7 C4' A B1234 -67.553-110.326 43.389 1.00 0.01 C
ATOM 8 O4' A B1234 -66.658-110.953 44.334 1.00 0.01 O
ATOM 9 C3' A B1234 -68.927-110.500 43.987 1.00 0.01 C
ATOM 10 O3' A B1234 -69.938-110.537 43.014 1.00 0.01 O
ATOM 11 C2' A B1234 -68.823-111.763 44.836 1.00 0.01 C
ATOM 12 O2' A B1234 -69.060-112.924 44.075 1.00 0.01 O
ATOM 13 C1' A B1234 -67.366-111.736 45.263 1.00 0.01 C
ATOM 14 N9 A B1234 -67.203-111.119 46.578 1.00 0.17 N
ATOM 15 C8 A B1234 -66.507-109.997 46.924 1.00 0.17 C
ATOM 16 N7 A B1234 -66.604-109.680 48.194 1.00 0.17 N
ATOM 17 C5 A B1234 -67.418-110.664 48.697 1.00 0.17 C
ATOM 18 C6 A B1234 -67.900-110.903 49.969 1.00 0.17 C
ATOM 19 N6 A B1234 -67.615-110.140 51.023 1.00 0.17 N
ATOM 20 N1 A B1234 -68.701-111.961 50.131 1.00 0.17 N
ATOM 21 C2 A B1234 -68.997-112.721 49.076 1.00 0.17 C
ATOM 22 N3 A B1234 -68.598-112.608 47.815 1.00 0.17 N
ATOM 23 C4 A B1234 -67.800-111.542 47.713 1.00 0.17 C
ATOM 24 P U B1235 -71.140-109.488 43.130 1.00 0.01 P
ATOM 25 OP1 U B1235 -72.079-109.732 41.992 1.00 0.01 O
ATOM 26 OP2 U B1235 -70.530-108.134 43.290 1.00 0.01 O
ATOM 27 O5' U B1235 -71.813-109.928 44.499 1.00 0.01 O
TER
ATOM 2 P A A1197 -65.567-110.182 56.698 1.00 0.01 P
ATOM 3 OP1 A A1197 -65.901-110.715 55.365 1.00 0.01 O
ATOM 4 OP2 A A1197 -65.524-111.099 57.855 1.00 0.01 O
ATOM 5 O5' A A1197 -64.223-109.392 56.632 1.00 0.01 O
ATOM 6 C5' A A1197 -63.013-110.082 56.792 1.00 0.01 C
ATOM 7 C4' A A1197 -61.943-109.475 55.967 1.00 0.01 C
ATOM 8 O4' A A1197 -62.300-109.579 54.560 1.00 0.01 O
ATOM 9 C3' A A1197 -61.718-107.993 56.227 1.00 0.01 C
ATOM 10 O3' A A1197 -60.345-107.704 55.997 1.00 0.01 O
ATOM 11 C2' A A1197 -62.550-107.340 55.136 1.00 0.01 C
ATOM 12 O2' A A1197 -62.169-106.027 54.837 1.00 0.01 O
ATOM 13 C1' A A1197 -62.244-108.280 53.988 1.00 0.01 C
ATOM 14 N9 A A1197 -63.155-108.202 52.842 1.00 0.01 N
ATOM 15 C8 A A1197 -64.366-108.799 52.618 1.00 0.01 C
ATOM 16 N7 A A1197 -64.901-108.541 51.444 1.00 0.01 N
ATOM 17 C5 A A1197 -63.962-107.725 50.835 1.00 0.01 C
ATOM 18 C6 A A1197 -63.923-107.111 49.569 1.00 0.01 C
ATOM 19 N6 A A1197 -64.885-107.200 48.649 1.00 0.01 N
ATOM 20 N1 A A1197 -62.850-106.355 49.300 1.00 0.01 N
ATOM 21 C2 A A1197 -61.895-106.243 50.220 1.00 0.01 C
ATOM 22 N3 A A1197 -61.818-106.777 51.434 1.00 0.01 N
ATOM 23 C4 A A1197 -62.891-107.519 51.687 1.00 0.01 C
ATOM 24 P A A1198 -59.402-107.286 57.204 1.00 0.13 P
ATOM 25 OP1 A A1198 -60.265-107.186 58.410 1.00 0.13 O
ATOM 26 OP2 A A1198 -58.659-106.110 56.755 1.00 0.13 O
ATOM 27 O5' A A1198 -58.414-108.521 57.342 1.00 0.13 O
TER
ATOM 1 O3' U B1233 -65.096-106.685 43.483 1.00 0.01 O
ATOM 2 P A B1234 -66.345-106.763 44.467 1.00 0.01 P
ATOM 3 OP1 A B1234 -67.424-105.965 43.864 1.00 0.01 O
ATOM 4 OP2 A B1234 -65.845-106.387 45.809 1.00 0.01 O
ATOM 5 O5' A B1234 -66.753-108.298 44.413 1.00 0.01 O
ATOM 6 C5' A B1234 -67.127-108.905 43.185 1.00 0.01 C
ATOM 7 C4' A B1234 -67.553-110.326 43.389 1.00 0.01 C
ATOM 8 O4' A B1234 -66.658-110.953 44.334 1.00 0.01 O
ATOM 9 C3' A B1234 -68.927-110.500 43.987 1.00 0.01 C
ATOM 10 O3' A B1234 -69.938-110.537 43.014 1.00 0.01 O
ATOM 11 C2' A B1234 -68.823-111.763 44.836 1.00 0.01 C
ATOM 12 O2' A B1234 -69.060-112.924 44.075 1.00 0.01 O
ATOM 13 C1' A B1234 -67.366-111.736 45.263 1.00 0.01 C
ATOM 14 N9 A B1234 -67.203-111.119 46.578 1.00 0.17 N
ATOM 15 C8 A B1234 -66.507-109.997 46.924 1.00 0.17 C
ATOM 16 N7 A B1234 -66.604-109.680 48.194 1.00 0.17 N
ATOM 17 C5 A B1234 -67.418-110.664 48.697 1.00 0.17 C
ATOM 18 C6 A B1234 -67.900-110.903 49.969 1.00 0.17 C
ATOM 19 N6 A B1234 -67.615-110.140 51.023 1.00 0.17 N
ATOM 20 N1 A B1234 -68.701-111.961 50.131 1.00 0.17 N
ATOM 21 C2 A B1234 -68.997-112.721 49.076 1.00 0.17 C
ATOM 22 N3 A B1234 -68.598-112.608 47.815 1.00 0.17 N
ATOM 23 C4 A B1234 -67.800-111.542 47.713 1.00 0.17 C
ATOM 24 P U B1235 -71.140-109.488 43.130 1.00 0.01 P
ATOM 25 OP1 U B1235 -72.079-109.732 41.992 1.00 0.01 O
ATOM 26 OP2 U B1235 -70.530-108.134 43.290 1.00 0.01 O
ATOM 27 O5' U B1235 -71.813-109.928 44.499 1.00 0.01 O
TER
Atoms:
OP1: (-65.901,-110.715,55.365)
OP2: (-65.524,-111.099,57.855)
C3': (-61.718,-107.993,56.227)
C1': (-62.244,-108.280,53.988)
C5': (-63.013,-110.082,56.792)
O4': (-62.300,-109.579,54.560)
C8: (-64.366,-108.799,52.618)
O2': (-62.169,-106.027,54.837)
C6: (-63.923,-107.111,49.569)
C5: (-63.962,-107.725,50.835)
C4: (-62.891,-107.519,51.687)
P: (-65.567,-110.182,56.698)
C4': (-61.943,-109.475,55.967)
C2': (-62.550,-107.340,55.136)
C2: (-61.895,-106.243,50.220)
N1: (-62.850,-106.355,49.300)
N3: (-61.818,-106.777,51.434)
N6: (-64.885,-107.200,48.649)
N7: (-64.901,-108.541,51.444)
N9: (-63.155,-108.202,52.842)
O5': (-64.223,-109.392,56.632)
O3': (-60.345,-107.704,55.997)
OP2: (-65.524,-111.099,57.855)
C3': (-61.718,-107.993,56.227)
C1': (-62.244,-108.280,53.988)
C5': (-63.013,-110.082,56.792)
O4': (-62.300,-109.579,54.560)
C8: (-64.366,-108.799,52.618)
O2': (-62.169,-106.027,54.837)
C6: (-63.923,-107.111,49.569)
C5: (-63.962,-107.725,50.835)
C4: (-62.891,-107.519,51.687)
P: (-65.567,-110.182,56.698)
C4': (-61.943,-109.475,55.967)
C2': (-62.550,-107.340,55.136)
C2: (-61.895,-106.243,50.220)
N1: (-62.850,-106.355,49.300)
N3: (-61.818,-106.777,51.434)
N6: (-64.885,-107.200,48.649)
N7: (-64.901,-108.541,51.444)
N9: (-63.155,-108.202,52.842)
O5': (-64.223,-109.392,56.632)
O3': (-60.345,-107.704,55.997)
OP1: (-67.424,-105.965,43.864)
OP2: (-65.845,-106.387,45.809)
C3': (-68.927,-110.500,43.987)
C1': (-67.366,-111.736,45.263)
C5': (-67.127,-108.905,43.185)
O4': (-66.658,-110.953,44.334)
C8: (-66.507,-109.997,46.924)
O2': (-69.060,-112.924,44.075)
C6: (-67.900,-110.903,49.969)
C5: (-67.418,-110.664,48.697)
C4: (-67.800,-111.542,47.713)
P: (-66.345,-106.763,44.467)
C4': (-67.553,-110.326,43.389)
C2': (-68.823,-111.763,44.836)
C2: (-68.997,-112.721,49.076)
N1: (-68.701,-111.961,50.131)
N3: (-68.598,-112.608,47.815)
N6: (-67.615,-110.140,51.023)
N7: (-66.604,-109.680,48.194)
N9: (-67.203,-111.119,46.578)
O5': (-66.753,-108.298,44.413)
O3': (-69.938,-110.537,43.014)
OP2: (-65.845,-106.387,45.809)
C3': (-68.927,-110.500,43.987)
C1': (-67.366,-111.736,45.263)
C5': (-67.127,-108.905,43.185)
O4': (-66.658,-110.953,44.334)
C8: (-66.507,-109.997,46.924)
O2': (-69.060,-112.924,44.075)
C6: (-67.900,-110.903,49.969)
C5: (-67.418,-110.664,48.697)
C4: (-67.800,-111.542,47.713)
P: (-66.345,-106.763,44.467)
C4': (-67.553,-110.326,43.389)
C2': (-68.823,-111.763,44.836)
C2: (-68.997,-112.721,49.076)
N1: (-68.701,-111.961,50.131)
N3: (-68.598,-112.608,47.815)
N6: (-67.615,-110.140,51.023)
N7: (-66.604,-109.680,48.194)
N9: (-67.203,-111.119,46.578)
O5': (-66.753,-108.298,44.413)
O3': (-69.938,-110.537,43.014)
Image (generated by PyMOL):