Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1J1U:B8:B23
Extra
PDB:
ATOM 1 O3' U A 7 -3.308 36.602 94.093 1.00 44.54 O
ATOM 2 P A A 8 -1.820 36.302 94.665 1.00 45.46 P
ATOM 3 OP1 A A 8 -1.312 37.538 95.254 1.00 45.06 O
ATOM 4 OP2 A A 8 -1.067 35.612 93.599 1.00 46.92 O
ATOM 5 O5' A A 8 -2.036 35.315 95.886 1.00 42.45 O
ATOM 6 C5' A A 8 -1.054 35.267 96.945 1.00 46.24 C
ATOM 7 C4' A A 8 -1.672 35.565 98.308 1.00 43.46 C
ATOM 8 O4' A A 8 -2.788 34.700 98.587 1.00 36.15 O
ATOM 9 C3' A A 8 -0.674 35.314 99.447 1.00 39.00 C
ATOM 10 O3' A A 8 -0.464 36.558 100.088 1.00 48.31 O
ATOM 11 C2' A A 8 -1.385 34.402 100.434 1.00 37.36 C
ATOM 12 O2' A A 8 -1.314 34.755 101.787 1.00 48.32 O
ATOM 13 C1' A A 8 -2.843 34.498 99.971 1.00 39.30 C
ATOM 14 N9 A A 8 -3.619 33.295 100.206 1.00 37.37 N
ATOM 15 C8 A A 8 -3.428 32.097 99.601 1.00 39.77 C
ATOM 16 N7 A A 8 -4.261 31.182 99.979 1.00 35.60 N
ATOM 17 C5 A A 8 -5.062 31.822 100.894 1.00 34.85 C
ATOM 18 C6 A A 8 -6.161 31.374 101.653 1.00 45.37 C
ATOM 19 N6 A A 8 -6.672 30.109 101.577 1.00 37.62 N
ATOM 20 N1 A A 8 -6.730 32.270 102.487 1.00 37.92 N
ATOM 21 C2 A A 8 -6.254 33.547 102.516 1.00 40.71 C
ATOM 22 N3 A A 8 -5.248 34.080 101.831 1.00 38.16 N
ATOM 23 C4 A A 8 -4.676 33.135 101.046 1.00 35.37 C
ATOM 24 P G A 9 0.541 37.641 99.446 1.00 50.95 P
ATOM 25 OP1 G A 9 0.504 38.821 100.355 1.00 53.60 O
ATOM 26 OP2 G A 9 0.285 37.836 98.002 1.00 51.07 O
ATOM 27 O5' G A 9 1.956 36.921 99.542 1.00 53.58 O
TER
ATOM 1 O3' G B 22 -10.335 27.924 103.554 1.00 89.87 O
ATOM 2 P A B 23 -8.973 27.471 104.288 1.00 90.92 P
ATOM 3 OP1 A B 23 -9.348 26.858 105.593 1.00 93.45 O
ATOM 4 OP2 A B 23 -8.059 28.652 104.267 1.00 96.00 O
ATOM 5 O5' A B 23 -8.384 26.333 103.326 1.00 88.29 O
ATOM 6 C5' A B 23 -9.095 25.100 103.116 1.00 77.88 C
ATOM 7 C4' A B 23 -8.244 24.115 102.356 1.00 74.38 C
ATOM 8 O4' A B 23 -8.059 24.574 100.993 1.00 71.09 O
ATOM 9 C3' A B 23 -6.839 23.943 102.880 1.00 74.42 C
ATOM 10 O3' A B 23 -6.786 23.026 103.954 1.00 71.97 O
ATOM 11 C2' A B 23 -6.103 23.445 101.648 1.00 75.88 C
ATOM 12 O2' A B 23 -6.373 22.086 101.385 1.00 78.28 O
ATOM 13 C1' A B 23 -6.743 24.299 100.555 1.00 70.81 C
ATOM 14 N9 A B 23 -6.080 25.585 100.266 1.00 70.07 N
ATOM 15 C8 A B 23 -6.327 26.818 100.847 1.00 59.06 C
ATOM 16 N7 A B 23 -5.606 27.790 100.349 1.00 57.72 N
ATOM 17 C5 A B 23 -4.832 27.168 99.376 1.00 57.64 C
ATOM 18 C6 A B 23 -3.890 27.662 98.474 1.00 55.15 C
ATOM 19 N6 A B 23 -3.568 28.961 98.364 1.00 51.47 N
ATOM 20 N1 A B 23 -3.289 26.778 97.652 1.00 65.78 N
ATOM 21 C2 A B 23 -3.647 25.488 97.720 1.00 65.73 C
ATOM 22 N3 A B 23 -4.541 24.907 98.514 1.00 65.95 N
ATOM 23 C4 A B 23 -5.102 25.809 99.327 1.00 60.59 C
ATOM 24 P A B 24 -5.633 23.178 105.064 1.00 78.46 P
ATOM 25 OP1 A B 24 -5.911 22.185 106.137 1.00 84.74 O
ATOM 26 OP2 A B 24 -5.505 24.616 105.429 1.00 82.02 O
ATOM 27 O5' A B 24 -4.306 22.793 104.271 1.00 78.01 O
TER
ATOM 2 P A A 8 -1.820 36.302 94.665 1.00 45.46 P
ATOM 3 OP1 A A 8 -1.312 37.538 95.254 1.00 45.06 O
ATOM 4 OP2 A A 8 -1.067 35.612 93.599 1.00 46.92 O
ATOM 5 O5' A A 8 -2.036 35.315 95.886 1.00 42.45 O
ATOM 6 C5' A A 8 -1.054 35.267 96.945 1.00 46.24 C
ATOM 7 C4' A A 8 -1.672 35.565 98.308 1.00 43.46 C
ATOM 8 O4' A A 8 -2.788 34.700 98.587 1.00 36.15 O
ATOM 9 C3' A A 8 -0.674 35.314 99.447 1.00 39.00 C
ATOM 10 O3' A A 8 -0.464 36.558 100.088 1.00 48.31 O
ATOM 11 C2' A A 8 -1.385 34.402 100.434 1.00 37.36 C
ATOM 12 O2' A A 8 -1.314 34.755 101.787 1.00 48.32 O
ATOM 13 C1' A A 8 -2.843 34.498 99.971 1.00 39.30 C
ATOM 14 N9 A A 8 -3.619 33.295 100.206 1.00 37.37 N
ATOM 15 C8 A A 8 -3.428 32.097 99.601 1.00 39.77 C
ATOM 16 N7 A A 8 -4.261 31.182 99.979 1.00 35.60 N
ATOM 17 C5 A A 8 -5.062 31.822 100.894 1.00 34.85 C
ATOM 18 C6 A A 8 -6.161 31.374 101.653 1.00 45.37 C
ATOM 19 N6 A A 8 -6.672 30.109 101.577 1.00 37.62 N
ATOM 20 N1 A A 8 -6.730 32.270 102.487 1.00 37.92 N
ATOM 21 C2 A A 8 -6.254 33.547 102.516 1.00 40.71 C
ATOM 22 N3 A A 8 -5.248 34.080 101.831 1.00 38.16 N
ATOM 23 C4 A A 8 -4.676 33.135 101.046 1.00 35.37 C
ATOM 24 P G A 9 0.541 37.641 99.446 1.00 50.95 P
ATOM 25 OP1 G A 9 0.504 38.821 100.355 1.00 53.60 O
ATOM 26 OP2 G A 9 0.285 37.836 98.002 1.00 51.07 O
ATOM 27 O5' G A 9 1.956 36.921 99.542 1.00 53.58 O
TER
ATOM 1 O3' G B 22 -10.335 27.924 103.554 1.00 89.87 O
ATOM 2 P A B 23 -8.973 27.471 104.288 1.00 90.92 P
ATOM 3 OP1 A B 23 -9.348 26.858 105.593 1.00 93.45 O
ATOM 4 OP2 A B 23 -8.059 28.652 104.267 1.00 96.00 O
ATOM 5 O5' A B 23 -8.384 26.333 103.326 1.00 88.29 O
ATOM 6 C5' A B 23 -9.095 25.100 103.116 1.00 77.88 C
ATOM 7 C4' A B 23 -8.244 24.115 102.356 1.00 74.38 C
ATOM 8 O4' A B 23 -8.059 24.574 100.993 1.00 71.09 O
ATOM 9 C3' A B 23 -6.839 23.943 102.880 1.00 74.42 C
ATOM 10 O3' A B 23 -6.786 23.026 103.954 1.00 71.97 O
ATOM 11 C2' A B 23 -6.103 23.445 101.648 1.00 75.88 C
ATOM 12 O2' A B 23 -6.373 22.086 101.385 1.00 78.28 O
ATOM 13 C1' A B 23 -6.743 24.299 100.555 1.00 70.81 C
ATOM 14 N9 A B 23 -6.080 25.585 100.266 1.00 70.07 N
ATOM 15 C8 A B 23 -6.327 26.818 100.847 1.00 59.06 C
ATOM 16 N7 A B 23 -5.606 27.790 100.349 1.00 57.72 N
ATOM 17 C5 A B 23 -4.832 27.168 99.376 1.00 57.64 C
ATOM 18 C6 A B 23 -3.890 27.662 98.474 1.00 55.15 C
ATOM 19 N6 A B 23 -3.568 28.961 98.364 1.00 51.47 N
ATOM 20 N1 A B 23 -3.289 26.778 97.652 1.00 65.78 N
ATOM 21 C2 A B 23 -3.647 25.488 97.720 1.00 65.73 C
ATOM 22 N3 A B 23 -4.541 24.907 98.514 1.00 65.95 N
ATOM 23 C4 A B 23 -5.102 25.809 99.327 1.00 60.59 C
ATOM 24 P A B 24 -5.633 23.178 105.064 1.00 78.46 P
ATOM 25 OP1 A B 24 -5.911 22.185 106.137 1.00 84.74 O
ATOM 26 OP2 A B 24 -5.505 24.616 105.429 1.00 82.02 O
ATOM 27 O5' A B 24 -4.306 22.793 104.271 1.00 78.01 O
TER
Atoms:
OP1: (-1.312,37.538,95.254)
OP2: (-1.067,35.612,93.599)
C3': (-0.674,35.314,99.447)
C1': (-2.843,34.498,99.971)
C5': (-1.054,35.267,96.945)
O4': (-2.788,34.700,98.587)
C8: (-3.428,32.097,99.601)
O2': (-1.314,34.755,101.787)
C6: (-6.161,31.374,101.653)
C5: (-5.062,31.822,100.894)
C4: (-4.676,33.135,101.046)
P: (-1.820,36.302,94.665)
C4': (-1.672,35.565,98.308)
C2': (-1.385,34.402,100.434)
C2: (-6.254,33.547,102.516)
N1: (-6.730,32.270,102.487)
N3: (-5.248,34.080,101.831)
N6: (-6.672,30.109,101.577)
N7: (-4.261,31.182,99.979)
N9: (-3.619,33.295,100.206)
O5': (-2.036,35.315,95.886)
O3': (-0.464,36.558,100.088)
OP2: (-1.067,35.612,93.599)
C3': (-0.674,35.314,99.447)
C1': (-2.843,34.498,99.971)
C5': (-1.054,35.267,96.945)
O4': (-2.788,34.700,98.587)
C8: (-3.428,32.097,99.601)
O2': (-1.314,34.755,101.787)
C6: (-6.161,31.374,101.653)
C5: (-5.062,31.822,100.894)
C4: (-4.676,33.135,101.046)
P: (-1.820,36.302,94.665)
C4': (-1.672,35.565,98.308)
C2': (-1.385,34.402,100.434)
C2: (-6.254,33.547,102.516)
N1: (-6.730,32.270,102.487)
N3: (-5.248,34.080,101.831)
N6: (-6.672,30.109,101.577)
N7: (-4.261,31.182,99.979)
N9: (-3.619,33.295,100.206)
O5': (-2.036,35.315,95.886)
O3': (-0.464,36.558,100.088)
OP1: (-9.348,26.858,105.593)
OP2: (-8.059,28.652,104.267)
C3': (-6.839,23.943,102.880)
C1': (-6.743,24.299,100.555)
C5': (-9.095,25.100,103.116)
O4': (-8.059,24.574,100.993)
C8: (-6.327,26.818,100.847)
O2': (-6.373,22.086,101.385)
C6: (-3.890,27.662,98.474)
C5: (-4.832,27.168,99.376)
C4: (-5.102,25.809,99.327)
P: (-8.973,27.471,104.288)
C4': (-8.244,24.115,102.356)
C2': (-6.103,23.445,101.648)
C2: (-3.647,25.488,97.720)
N1: (-3.289,26.778,97.652)
N3: (-4.541,24.907,98.514)
N6: (-3.568,28.961,98.364)
N7: (-5.606,27.790,100.349)
N9: (-6.080,25.585,100.266)
O5': (-8.384,26.333,103.326)
O3': (-6.786,23.026,103.954)
OP2: (-8.059,28.652,104.267)
C3': (-6.839,23.943,102.880)
C1': (-6.743,24.299,100.555)
C5': (-9.095,25.100,103.116)
O4': (-8.059,24.574,100.993)
C8: (-6.327,26.818,100.847)
O2': (-6.373,22.086,101.385)
C6: (-3.890,27.662,98.474)
C5: (-4.832,27.168,99.376)
C4: (-5.102,25.809,99.327)
P: (-8.973,27.471,104.288)
C4': (-8.244,24.115,102.356)
C2': (-6.103,23.445,101.648)
C2: (-3.647,25.488,97.720)
N1: (-3.289,26.778,97.652)
N3: (-4.541,24.907,98.514)
N6: (-3.568,28.961,98.364)
N7: (-5.606,27.790,100.349)
N9: (-6.080,25.585,100.266)
O5': (-8.384,26.333,103.326)
O3': (-6.786,23.026,103.954)
Image (generated by PyMOL):