Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:132:145
Extra
PDB:
ATOM 1 O3' A A 31 36.919 -21.589 99.276 1.00 35.23 O
ATOM 2 P A A 32 36.686 -22.671 98.137 1.00 34.61 P
ATOM 3 OP1 A A 32 35.257 -23.055 98.210 1.00 34.65 O
ATOM 4 OP2 A A 32 37.684 -23.715 98.285 1.00 34.72 O
ATOM 5 O5' A A 32 36.981 -21.806 96.850 1.00 34.30 O
ATOM 6 C5' A A 32 36.206 -20.667 96.583 1.00 34.17 C
ATOM 7 C4' A A 32 37.014 -19.551 96.024 1.00 34.00 C
ATOM 8 O4' A A 32 37.989 -19.117 97.002 1.00 34.17 O
ATOM 9 C3' A A 32 37.857 -19.870 94.806 1.00 33.80 C
ATOM 10 O3' A A 32 37.120 -19.923 93.610 1.00 33.59 O
ATOM 11 C2' A A 32 38.859 -18.738 94.843 1.00 33.75 C
ATOM 12 O2' A A 32 38.210 -17.512 94.548 1.00 33.64 O
ATOM 13 C1' A A 32 39.190 -18.732 96.323 1.00 34.03 C
ATOM 14 N9 A A 32 40.262 -19.706 96.635 1.00 34.15 N
ATOM 15 C8 A A 32 40.228 -20.975 97.172 1.00 34.33 C
ATOM 16 N7 A A 32 41.358 -21.595 97.292 1.00 34.42 N
ATOM 17 C5 A A 32 42.214 -20.642 96.791 1.00 34.28 C
ATOM 18 C6 A A 32 43.591 -20.649 96.609 1.00 34.29 C
ATOM 19 N6 A A 32 44.346 -21.667 96.965 1.00 34.45 N
ATOM 20 N1 A A 32 44.145 -19.564 96.051 1.00 34.13 N
ATOM 21 C2 A A 32 43.369 -18.528 95.722 1.00 33.99 C
ATOM 22 N3 A A 32 42.042 -18.387 95.827 1.00 33.96 N
ATOM 23 C4 A A 32 41.548 -19.495 96.371 1.00 34.11 C
ATOM 24 P C A 33 37.698 -20.704 92.333 1.00 38.89 P
ATOM 25 OP1 C A 33 36.623 -20.762 91.349 1.00 38.74 O
ATOM 26 OP2 C A 33 38.264 -21.985 92.834 1.00 39.06 O
ATOM 27 O5' C A 33 38.867 -19.710 91.807 1.00 38.75 O
TER
ATOM 1 O3' C B 44 48.539 -25.438 95.570 1.00 36.27 O
ATOM 2 P A B 45 48.882 -25.146 97.092 1.00 32.89 P
ATOM 3 OP1 A B 45 47.772 -24.343 97.642 1.00 32.87 O
ATOM 4 OP2 A B 45 50.276 -24.564 97.148 1.00 32.94 O
ATOM 5 O5' A B 45 48.846 -26.578 97.735 1.00 33.16 O
ATOM 6 C5' A B 45 49.166 -26.733 99.093 1.00 33.48 C
ATOM 7 C4' A B 45 48.034 -27.319 99.852 1.00 33.64 C
ATOM 8 O4' A B 45 46.952 -26.344 99.968 1.00 33.50 O
ATOM 9 C3' A B 45 47.421 -28.571 99.236 1.00 33.61 C
ATOM 10 O3' A B 45 47.134 -29.481 100.275 1.00 33.92 O
ATOM 11 C2' A B 45 46.126 -28.022 98.645 1.00 33.36 C
ATOM 12 O2' A B 45 45.089 -28.954 98.409 1.00 33.37 O
ATOM 13 C1' A B 45 45.751 -27.017 99.704 1.00 33.46 C
ATOM 14 N9 A B 45 44.709 -26.072 99.287 1.00 33.23 N
ATOM 15 C8 A B 45 44.787 -25.049 98.433 1.00 32.96 C
ATOM 16 N7 A B 45 43.652 -24.448 98.282 1.00 32.83 N
ATOM 17 C5 A B 45 42.770 -25.155 99.040 1.00 33.02 C
ATOM 18 C6 A B 45 41.391 -24.996 99.248 1.00 33.01 C
ATOM 19 N6 A B 45 40.703 -24.008 98.688 1.00 32.79 N
ATOM 20 N1 A B 45 40.781 -25.869 100.088 1.00 33.25 N
ATOM 21 C2 A B 45 41.547 -26.814 100.639 1.00 33.48 C
ATOM 22 N3 A B 45 42.832 -27.050 100.467 1.00 33.51 N
ATOM 23 C4 A B 45 43.397 -26.172 99.657 1.00 33.27 C
ATOM 24 P A B 46 48.022 -30.810 100.433 1.00 36.45 P
ATOM 25 OP1 A B 46 49.427 -30.470 100.206 1.00 36.44 O
ATOM 26 OP2 A B 46 47.432 -31.766 99.594 1.00 36.36 O
ATOM 27 O5' A B 46 47.832 -31.245 101.960 1.00 36.83 O
TER
ATOM 2 P A A 32 36.686 -22.671 98.137 1.00 34.61 P
ATOM 3 OP1 A A 32 35.257 -23.055 98.210 1.00 34.65 O
ATOM 4 OP2 A A 32 37.684 -23.715 98.285 1.00 34.72 O
ATOM 5 O5' A A 32 36.981 -21.806 96.850 1.00 34.30 O
ATOM 6 C5' A A 32 36.206 -20.667 96.583 1.00 34.17 C
ATOM 7 C4' A A 32 37.014 -19.551 96.024 1.00 34.00 C
ATOM 8 O4' A A 32 37.989 -19.117 97.002 1.00 34.17 O
ATOM 9 C3' A A 32 37.857 -19.870 94.806 1.00 33.80 C
ATOM 10 O3' A A 32 37.120 -19.923 93.610 1.00 33.59 O
ATOM 11 C2' A A 32 38.859 -18.738 94.843 1.00 33.75 C
ATOM 12 O2' A A 32 38.210 -17.512 94.548 1.00 33.64 O
ATOM 13 C1' A A 32 39.190 -18.732 96.323 1.00 34.03 C
ATOM 14 N9 A A 32 40.262 -19.706 96.635 1.00 34.15 N
ATOM 15 C8 A A 32 40.228 -20.975 97.172 1.00 34.33 C
ATOM 16 N7 A A 32 41.358 -21.595 97.292 1.00 34.42 N
ATOM 17 C5 A A 32 42.214 -20.642 96.791 1.00 34.28 C
ATOM 18 C6 A A 32 43.591 -20.649 96.609 1.00 34.29 C
ATOM 19 N6 A A 32 44.346 -21.667 96.965 1.00 34.45 N
ATOM 20 N1 A A 32 44.145 -19.564 96.051 1.00 34.13 N
ATOM 21 C2 A A 32 43.369 -18.528 95.722 1.00 33.99 C
ATOM 22 N3 A A 32 42.042 -18.387 95.827 1.00 33.96 N
ATOM 23 C4 A A 32 41.548 -19.495 96.371 1.00 34.11 C
ATOM 24 P C A 33 37.698 -20.704 92.333 1.00 38.89 P
ATOM 25 OP1 C A 33 36.623 -20.762 91.349 1.00 38.74 O
ATOM 26 OP2 C A 33 38.264 -21.985 92.834 1.00 39.06 O
ATOM 27 O5' C A 33 38.867 -19.710 91.807 1.00 38.75 O
TER
ATOM 1 O3' C B 44 48.539 -25.438 95.570 1.00 36.27 O
ATOM 2 P A B 45 48.882 -25.146 97.092 1.00 32.89 P
ATOM 3 OP1 A B 45 47.772 -24.343 97.642 1.00 32.87 O
ATOM 4 OP2 A B 45 50.276 -24.564 97.148 1.00 32.94 O
ATOM 5 O5' A B 45 48.846 -26.578 97.735 1.00 33.16 O
ATOM 6 C5' A B 45 49.166 -26.733 99.093 1.00 33.48 C
ATOM 7 C4' A B 45 48.034 -27.319 99.852 1.00 33.64 C
ATOM 8 O4' A B 45 46.952 -26.344 99.968 1.00 33.50 O
ATOM 9 C3' A B 45 47.421 -28.571 99.236 1.00 33.61 C
ATOM 10 O3' A B 45 47.134 -29.481 100.275 1.00 33.92 O
ATOM 11 C2' A B 45 46.126 -28.022 98.645 1.00 33.36 C
ATOM 12 O2' A B 45 45.089 -28.954 98.409 1.00 33.37 O
ATOM 13 C1' A B 45 45.751 -27.017 99.704 1.00 33.46 C
ATOM 14 N9 A B 45 44.709 -26.072 99.287 1.00 33.23 N
ATOM 15 C8 A B 45 44.787 -25.049 98.433 1.00 32.96 C
ATOM 16 N7 A B 45 43.652 -24.448 98.282 1.00 32.83 N
ATOM 17 C5 A B 45 42.770 -25.155 99.040 1.00 33.02 C
ATOM 18 C6 A B 45 41.391 -24.996 99.248 1.00 33.01 C
ATOM 19 N6 A B 45 40.703 -24.008 98.688 1.00 32.79 N
ATOM 20 N1 A B 45 40.781 -25.869 100.088 1.00 33.25 N
ATOM 21 C2 A B 45 41.547 -26.814 100.639 1.00 33.48 C
ATOM 22 N3 A B 45 42.832 -27.050 100.467 1.00 33.51 N
ATOM 23 C4 A B 45 43.397 -26.172 99.657 1.00 33.27 C
ATOM 24 P A B 46 48.022 -30.810 100.433 1.00 36.45 P
ATOM 25 OP1 A B 46 49.427 -30.470 100.206 1.00 36.44 O
ATOM 26 OP2 A B 46 47.432 -31.766 99.594 1.00 36.36 O
ATOM 27 O5' A B 46 47.832 -31.245 101.960 1.00 36.83 O
TER
Atoms:
OP1: (35.257,-23.055,98.210)
OP2: (37.684,-23.715,98.285)
C3': (37.857,-19.870,94.806)
C1': (39.190,-18.732,96.323)
C5': (36.206,-20.667,96.583)
O4': (37.989,-19.117,97.002)
C8: (40.228,-20.975,97.172)
O2': (38.210,-17.512,94.548)
C6: (43.591,-20.649,96.609)
C5: (42.214,-20.642,96.791)
C4: (41.548,-19.495,96.371)
P: (36.686,-22.671,98.137)
C4': (37.014,-19.551,96.024)
C2': (38.859,-18.738,94.843)
C2: (43.369,-18.528,95.722)
N1: (44.145,-19.564,96.051)
N3: (42.042,-18.387,95.827)
N6: (44.346,-21.667,96.965)
N7: (41.358,-21.595,97.292)
N9: (40.262,-19.706,96.635)
O5': (36.981,-21.806,96.850)
O3': (37.120,-19.923,93.610)
OP2: (37.684,-23.715,98.285)
C3': (37.857,-19.870,94.806)
C1': (39.190,-18.732,96.323)
C5': (36.206,-20.667,96.583)
O4': (37.989,-19.117,97.002)
C8: (40.228,-20.975,97.172)
O2': (38.210,-17.512,94.548)
C6: (43.591,-20.649,96.609)
C5: (42.214,-20.642,96.791)
C4: (41.548,-19.495,96.371)
P: (36.686,-22.671,98.137)
C4': (37.014,-19.551,96.024)
C2': (38.859,-18.738,94.843)
C2: (43.369,-18.528,95.722)
N1: (44.145,-19.564,96.051)
N3: (42.042,-18.387,95.827)
N6: (44.346,-21.667,96.965)
N7: (41.358,-21.595,97.292)
N9: (40.262,-19.706,96.635)
O5': (36.981,-21.806,96.850)
O3': (37.120,-19.923,93.610)
OP1: (47.772,-24.343,97.642)
OP2: (50.276,-24.564,97.148)
C3': (47.421,-28.571,99.236)
C1': (45.751,-27.017,99.704)
C5': (49.166,-26.733,99.093)
O4': (46.952,-26.344,99.968)
C8: (44.787,-25.049,98.433)
O2': (45.089,-28.954,98.409)
C6: (41.391,-24.996,99.248)
C5: (42.770,-25.155,99.040)
C4: (43.397,-26.172,99.657)
P: (48.882,-25.146,97.092)
C4': (48.034,-27.319,99.852)
C2': (46.126,-28.022,98.645)
C2: (41.547,-26.814,100.639)
N1: (40.781,-25.869,100.088)
N3: (42.832,-27.050,100.467)
N6: (40.703,-24.008,98.688)
N7: (43.652,-24.448,98.282)
N9: (44.709,-26.072,99.287)
O5': (48.846,-26.578,97.735)
O3': (47.134,-29.481,100.275)
OP2: (50.276,-24.564,97.148)
C3': (47.421,-28.571,99.236)
C1': (45.751,-27.017,99.704)
C5': (49.166,-26.733,99.093)
O4': (46.952,-26.344,99.968)
C8: (44.787,-25.049,98.433)
O2': (45.089,-28.954,98.409)
C6: (41.391,-24.996,99.248)
C5: (42.770,-25.155,99.040)
C4: (43.397,-26.172,99.657)
P: (48.882,-25.146,97.092)
C4': (48.034,-27.319,99.852)
C2': (46.126,-28.022,98.645)
C2: (41.547,-26.814,100.639)
N1: (40.781,-25.869,100.088)
N3: (42.832,-27.050,100.467)
N6: (40.703,-24.008,98.688)
N7: (43.652,-24.448,98.282)
N9: (44.709,-26.072,99.287)
O5': (48.846,-26.578,97.735)
O3': (47.134,-29.481,100.275)
Image (generated by PyMOL):