Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1936:11001
Extra
PDB:
ATOM 1 O3' G A 935 41.839 -55.619 29.970 1.00 53.35 O
ATOM 2 P A A 936 40.412 -55.051 29.463 1.00 47.11 P
ATOM 3 OP1 A A 936 39.459 -56.177 29.508 1.00 47.46 O
ATOM 4 OP2 A A 936 40.645 -54.352 28.175 1.00 47.21 O
ATOM 5 O5' A A 936 40.032 -53.991 30.573 1.00 46.53 O
ATOM 6 C5' A A 936 40.161 -54.323 31.929 1.00 46.31 C
ATOM 7 C4' A A 936 40.136 -53.102 32.769 1.00 45.76 C
ATOM 8 O4' A A 936 41.369 -52.366 32.594 1.00 45.57 O
ATOM 9 C3' A A 936 39.053 -52.118 32.420 1.00 45.58 C
ATOM 10 O3' A A 936 37.821 -52.492 32.979 1.00 45.60 O
ATOM 11 C2' A A 936 39.620 -50.793 32.949 1.00 45.08 C
ATOM 12 O2' A A 936 39.419 -50.667 34.357 1.00 44.74 O
ATOM 13 C1' A A 936 41.121 -50.982 32.693 1.00 45.16 C
ATOM 14 N9 A A 936 41.593 -50.349 31.448 1.00 45.26 N
ATOM 15 C8 A A 936 41.809 -51.029 30.280 1.00 45.72 C
ATOM 16 N7 A A 936 42.281 -50.289 29.312 1.00 45.74 N
ATOM 17 C5 A A 936 42.418 -49.035 29.883 1.00 45.26 C
ATOM 18 C6 A A 936 42.911 -47.814 29.365 1.00 45.06 C
ATOM 19 N6 A A 936 43.336 -47.701 28.109 1.00 45.34 N
ATOM 20 N1 A A 936 42.957 -46.724 30.174 1.00 44.59 N
ATOM 21 C2 A A 936 42.527 -46.894 31.432 1.00 44.35 C
ATOM 22 N3 A A 936 42.060 -47.998 32.052 1.00 44.49 N
ATOM 23 C4 A A 936 42.017 -49.058 31.212 1.00 44.96 C
ATOM 24 P G A 937 36.450 -51.926 32.379 1.00 46.22 P
ATOM 25 OP1 G A 937 35.374 -52.298 33.332 1.00 46.16 O
ATOM 26 OP2 G A 937 36.356 -52.379 30.950 1.00 46.69 O
ATOM 27 O5' G A 937 36.669 -50.369 32.438 1.00 45.77 O
TER
ATOM 1 O3' U B1000 47.557 -36.462 27.627 1.00 43.73 O
ATOM 2 P A B1001 48.402 -37.410 28.610 1.00 45.53 P
ATOM 3 OP1 A B1001 49.681 -36.712 28.912 1.00 45.34 O
ATOM 4 OP2 A B1001 48.455 -38.734 28.016 1.00 45.94 O
ATOM 5 O5' A B1001 47.486 -37.448 29.875 1.00 45.24 O
ATOM 6 C5' A B1001 47.947 -37.953 31.083 1.00 45.06 C
ATOM 7 C4' A B1001 46.848 -37.976 32.074 1.00 44.84 C
ATOM 8 O4' A B1001 45.565 -37.902 31.378 1.00 44.98 O
ATOM 9 C3' A B1001 46.768 -39.249 32.861 1.00 44.93 C
ATOM 10 O3' A B1001 47.593 -39.216 33.954 1.00 44.70 O
ATOM 11 C2' A B1001 45.319 -39.325 33.226 1.00 44.86 C
ATOM 12 O2' A B1001 45.046 -38.366 34.211 1.00 44.46 O
ATOM 13 C1' A B1001 44.688 -38.874 31.914 1.00 45.06 C
ATOM 14 N9 A B1001 44.639 -40.002 30.985 1.00 45.50 N
ATOM 15 C8 A B1001 45.226 -40.118 29.765 1.00 45.80 C
ATOM 16 N7 A B1001 45.069 -41.306 29.249 1.00 46.18 N
ATOM 17 C5 A B1001 44.334 -41.998 30.200 1.00 46.11 C
ATOM 18 C6 A B1001 43.836 -43.308 30.246 1.00 46.40 C
ATOM 19 N6 A B1001 43.996 -44.207 29.300 1.00 46.83 N
ATOM 20 N1 A B1001 43.176 -43.678 31.350 1.00 46.23 N
ATOM 21 C2 A B1001 42.996 -42.790 32.349 1.00 45.81 C
ATOM 22 N3 A B1001 43.406 -41.536 32.419 1.00 45.51 N
ATOM 23 C4 A B1001 44.098 -41.209 31.304 1.00 45.68 C
ATOM 24 P U B1002 48.836 -40.179 34.020 1.00 43.45 P
ATOM 25 OP1 U B1002 49.698 -39.602 35.083 1.00 43.14 O
ATOM 26 OP2 U B1002 49.383 -40.324 32.648 1.00 43.78 O
ATOM 27 O5' U B1002 48.197 -41.588 34.497 1.00 43.65 O
TER
ATOM 2 P A A 936 40.412 -55.051 29.463 1.00 47.11 P
ATOM 3 OP1 A A 936 39.459 -56.177 29.508 1.00 47.46 O
ATOM 4 OP2 A A 936 40.645 -54.352 28.175 1.00 47.21 O
ATOM 5 O5' A A 936 40.032 -53.991 30.573 1.00 46.53 O
ATOM 6 C5' A A 936 40.161 -54.323 31.929 1.00 46.31 C
ATOM 7 C4' A A 936 40.136 -53.102 32.769 1.00 45.76 C
ATOM 8 O4' A A 936 41.369 -52.366 32.594 1.00 45.57 O
ATOM 9 C3' A A 936 39.053 -52.118 32.420 1.00 45.58 C
ATOM 10 O3' A A 936 37.821 -52.492 32.979 1.00 45.60 O
ATOM 11 C2' A A 936 39.620 -50.793 32.949 1.00 45.08 C
ATOM 12 O2' A A 936 39.419 -50.667 34.357 1.00 44.74 O
ATOM 13 C1' A A 936 41.121 -50.982 32.693 1.00 45.16 C
ATOM 14 N9 A A 936 41.593 -50.349 31.448 1.00 45.26 N
ATOM 15 C8 A A 936 41.809 -51.029 30.280 1.00 45.72 C
ATOM 16 N7 A A 936 42.281 -50.289 29.312 1.00 45.74 N
ATOM 17 C5 A A 936 42.418 -49.035 29.883 1.00 45.26 C
ATOM 18 C6 A A 936 42.911 -47.814 29.365 1.00 45.06 C
ATOM 19 N6 A A 936 43.336 -47.701 28.109 1.00 45.34 N
ATOM 20 N1 A A 936 42.957 -46.724 30.174 1.00 44.59 N
ATOM 21 C2 A A 936 42.527 -46.894 31.432 1.00 44.35 C
ATOM 22 N3 A A 936 42.060 -47.998 32.052 1.00 44.49 N
ATOM 23 C4 A A 936 42.017 -49.058 31.212 1.00 44.96 C
ATOM 24 P G A 937 36.450 -51.926 32.379 1.00 46.22 P
ATOM 25 OP1 G A 937 35.374 -52.298 33.332 1.00 46.16 O
ATOM 26 OP2 G A 937 36.356 -52.379 30.950 1.00 46.69 O
ATOM 27 O5' G A 937 36.669 -50.369 32.438 1.00 45.77 O
TER
ATOM 1 O3' U B1000 47.557 -36.462 27.627 1.00 43.73 O
ATOM 2 P A B1001 48.402 -37.410 28.610 1.00 45.53 P
ATOM 3 OP1 A B1001 49.681 -36.712 28.912 1.00 45.34 O
ATOM 4 OP2 A B1001 48.455 -38.734 28.016 1.00 45.94 O
ATOM 5 O5' A B1001 47.486 -37.448 29.875 1.00 45.24 O
ATOM 6 C5' A B1001 47.947 -37.953 31.083 1.00 45.06 C
ATOM 7 C4' A B1001 46.848 -37.976 32.074 1.00 44.84 C
ATOM 8 O4' A B1001 45.565 -37.902 31.378 1.00 44.98 O
ATOM 9 C3' A B1001 46.768 -39.249 32.861 1.00 44.93 C
ATOM 10 O3' A B1001 47.593 -39.216 33.954 1.00 44.70 O
ATOM 11 C2' A B1001 45.319 -39.325 33.226 1.00 44.86 C
ATOM 12 O2' A B1001 45.046 -38.366 34.211 1.00 44.46 O
ATOM 13 C1' A B1001 44.688 -38.874 31.914 1.00 45.06 C
ATOM 14 N9 A B1001 44.639 -40.002 30.985 1.00 45.50 N
ATOM 15 C8 A B1001 45.226 -40.118 29.765 1.00 45.80 C
ATOM 16 N7 A B1001 45.069 -41.306 29.249 1.00 46.18 N
ATOM 17 C5 A B1001 44.334 -41.998 30.200 1.00 46.11 C
ATOM 18 C6 A B1001 43.836 -43.308 30.246 1.00 46.40 C
ATOM 19 N6 A B1001 43.996 -44.207 29.300 1.00 46.83 N
ATOM 20 N1 A B1001 43.176 -43.678 31.350 1.00 46.23 N
ATOM 21 C2 A B1001 42.996 -42.790 32.349 1.00 45.81 C
ATOM 22 N3 A B1001 43.406 -41.536 32.419 1.00 45.51 N
ATOM 23 C4 A B1001 44.098 -41.209 31.304 1.00 45.68 C
ATOM 24 P U B1002 48.836 -40.179 34.020 1.00 43.45 P
ATOM 25 OP1 U B1002 49.698 -39.602 35.083 1.00 43.14 O
ATOM 26 OP2 U B1002 49.383 -40.324 32.648 1.00 43.78 O
ATOM 27 O5' U B1002 48.197 -41.588 34.497 1.00 43.65 O
TER
Atoms:
OP1: (39.459,-56.177,29.508)
OP2: (40.645,-54.352,28.175)
C3': (39.053,-52.118,32.420)
C1': (41.121,-50.982,32.693)
C5': (40.161,-54.323,31.929)
O4': (41.369,-52.366,32.594)
C8: (41.809,-51.029,30.280)
O2': (39.419,-50.667,34.357)
C6: (42.911,-47.814,29.365)
C5: (42.418,-49.035,29.883)
C4: (42.017,-49.058,31.212)
P: (40.412,-55.051,29.463)
C4': (40.136,-53.102,32.769)
C2': (39.620,-50.793,32.949)
C2: (42.527,-46.894,31.432)
N1: (42.957,-46.724,30.174)
N3: (42.060,-47.998,32.052)
N6: (43.336,-47.701,28.109)
N7: (42.281,-50.289,29.312)
N9: (41.593,-50.349,31.448)
O5': (40.032,-53.991,30.573)
O3': (37.821,-52.492,32.979)
OP2: (40.645,-54.352,28.175)
C3': (39.053,-52.118,32.420)
C1': (41.121,-50.982,32.693)
C5': (40.161,-54.323,31.929)
O4': (41.369,-52.366,32.594)
C8: (41.809,-51.029,30.280)
O2': (39.419,-50.667,34.357)
C6: (42.911,-47.814,29.365)
C5: (42.418,-49.035,29.883)
C4: (42.017,-49.058,31.212)
P: (40.412,-55.051,29.463)
C4': (40.136,-53.102,32.769)
C2': (39.620,-50.793,32.949)
C2: (42.527,-46.894,31.432)
N1: (42.957,-46.724,30.174)
N3: (42.060,-47.998,32.052)
N6: (43.336,-47.701,28.109)
N7: (42.281,-50.289,29.312)
N9: (41.593,-50.349,31.448)
O5': (40.032,-53.991,30.573)
O3': (37.821,-52.492,32.979)
OP1: (49.681,-36.712,28.912)
OP2: (48.455,-38.734,28.016)
C3': (46.768,-39.249,32.861)
C1': (44.688,-38.874,31.914)
C5': (47.947,-37.953,31.083)
O4': (45.565,-37.902,31.378)
C8: (45.226,-40.118,29.765)
O2': (45.046,-38.366,34.211)
C6: (43.836,-43.308,30.246)
C5: (44.334,-41.998,30.200)
C4: (44.098,-41.209,31.304)
P: (48.402,-37.410,28.610)
C4': (46.848,-37.976,32.074)
C2': (45.319,-39.325,33.226)
C2: (42.996,-42.790,32.349)
N1: (43.176,-43.678,31.350)
N3: (43.406,-41.536,32.419)
N6: (43.996,-44.207,29.300)
N7: (45.069,-41.306,29.249)
N9: (44.639,-40.002,30.985)
O5': (47.486,-37.448,29.875)
O3': (47.593,-39.216,33.954)
OP2: (48.455,-38.734,28.016)
C3': (46.768,-39.249,32.861)
C1': (44.688,-38.874,31.914)
C5': (47.947,-37.953,31.083)
O4': (45.565,-37.902,31.378)
C8: (45.226,-40.118,29.765)
O2': (45.046,-38.366,34.211)
C6: (43.836,-43.308,30.246)
C5: (44.334,-41.998,30.200)
C4: (44.098,-41.209,31.304)
P: (48.402,-37.410,28.610)
C4': (46.848,-37.976,32.074)
C2': (45.319,-39.325,33.226)
C2: (42.996,-42.790,32.349)
N1: (43.176,-43.678,31.350)
N3: (43.406,-41.536,32.419)
N6: (43.996,-44.207,29.300)
N7: (45.069,-41.306,29.249)
N9: (44.639,-40.002,30.985)
O5': (47.486,-37.448,29.875)
O3': (47.593,-39.216,33.954)
Image (generated by PyMOL):