Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2258:A2259
Extra
PDB:
ATOM 1 O3' C A2257 -123.621 -60.647 11.795 1.00 0.01 O
ATOM 2 P U A2258 -123.117 -62.124 12.091 1.00 0.01 P
ATOM 3 OP1 U A2258 -123.928 -63.048 11.252 1.00 0.01 O
ATOM 4 OP2 U A2258 -123.125 -62.295 13.535 1.00 0.01 O
ATOM 5 O5' U A2258 -121.629 -62.077 11.583 1.00 0.01 O
ATOM 6 C5' U A2258 -121.312 -61.927 10.219 1.00 0.01 C
ATOM 7 C4' U A2258 -119.833 -61.830 10.058 1.00 0.01 C
ATOM 8 O4' U A2258 -119.365 -60.691 10.796 1.00 0.01 O
ATOM 9 C3' U A2258 -119.055 -62.972 10.640 1.00 0.01 C
ATOM 10 O3' U A2258 -118.969 -64.036 9.766 1.00 0.01 O
ATOM 11 C2' U A2258 -117.712 -62.358 10.956 1.00 0.01 C
ATOM 12 O2' U A2258 -116.910 -62.294 9.790 1.00 0.01 O
ATOM 13 C1' U A2258 -118.109 -60.948 11.352 1.00 0.01 C
ATOM 14 N1 U A2258 -118.200 -60.746 12.825 1.00 0.01 N
ATOM 15 C2 U A2258 -117.112 -60.144 13.390 1.00 0.01 C
ATOM 16 O2 U A2258 -116.175 -59.884 12.677 1.00 0.01 O
ATOM 17 N3 U A2258 -117.138 -59.893 14.736 1.00 0.01 N
ATOM 18 C4 U A2258 -118.184 -60.168 15.570 1.00 0.01 C
ATOM 19 O4 U A2258 -118.093 -59.862 16.776 1.00 0.01 O
ATOM 20 C5 U A2258 -119.309 -60.786 14.926 1.00 0.01 C
ATOM 21 C6 U A2258 -119.292 -61.031 13.615 1.00 0.01 C
ATOM 22 P A A2259 -118.558 -65.454 10.309 1.00 0.01 P
ATOM 23 OP1 A A2259 -117.204 -65.347 10.839 1.00 0.01 O
ATOM 24 OP2 A A2259 -118.825 -66.420 9.239 1.00 0.01 O
ATOM 25 O5' A A2259 -119.569 -65.673 11.480 1.00 0.01 O
TER
ATOM 1 O3' U B2258 -118.969 -64.036 9.766 1.00 0.01 O
ATOM 2 P A B2259 -118.558 -65.454 10.309 1.00 0.01 P
ATOM 3 OP1 A B2259 -117.204 -65.347 10.839 1.00 0.01 O
ATOM 4 OP2 A B2259 -118.825 -66.420 9.239 1.00 0.01 O
ATOM 5 O5' A B2259 -119.569 -65.673 11.480 1.00 0.01 O
ATOM 6 C5' A B2259 -120.053 -66.957 11.778 1.00 0.01 C
ATOM 7 C4' A B2259 -120.435 -67.035 13.202 1.00 0.01 C
ATOM 8 O4' A B2259 -119.315 -66.599 13.995 1.00 0.01 O
ATOM 9 C3' A B2259 -121.597 -66.151 13.595 1.00 0.01 C
ATOM 10 O3' A B2259 -122.365 -66.811 14.565 1.00 0.01 O
ATOM 11 C2' A B2259 -120.946 -64.953 14.244 1.00 0.01 C
ATOM 12 O2' A B2259 -121.763 -64.364 15.227 1.00 0.01 O
ATOM 13 C1' A B2259 -119.712 -65.576 14.867 1.00 0.01 C
ATOM 14 N9 A B2259 -118.561 -64.677 15.059 1.00 0.01 N
ATOM 15 C8 A B2259 -117.480 -64.439 14.234 1.00 0.01 C
ATOM 16 N7 A B2259 -116.555 -63.647 14.725 1.00 0.01 N
ATOM 17 C5 A B2259 -117.038 -63.361 15.977 1.00 0.01 C
ATOM 18 C6 A B2259 -116.526 -62.607 17.020 1.00 0.01 C
ATOM 19 N6 A B2259 -115.392 -61.936 17.005 1.00 0.01 N
ATOM 20 N1 A B2259 -117.224 -62.526 18.135 1.00 0.01 N
ATOM 21 C2 A B2259 -118.373 -63.188 18.190 1.00 0.01 C
ATOM 22 N3 A B2259 -118.969 -63.947 17.295 1.00 0.01 N
ATOM 23 C4 A B2259 -118.234 -63.997 16.197 1.00 0.01 C
ATOM 24 P A B2260 -123.693 -67.529 14.143 1.00 0.01 P
ATOM 25 OP1 A B2260 -124.396 -66.637 13.227 1.00 0.01 O
ATOM 26 OP2 A B2260 -124.347 -67.951 15.361 1.00 0.01 O
ATOM 27 O5' A B2260 -123.187 -68.767 13.349 1.00 0.01 O
TER
ATOM 2 P U A2258 -123.117 -62.124 12.091 1.00 0.01 P
ATOM 3 OP1 U A2258 -123.928 -63.048 11.252 1.00 0.01 O
ATOM 4 OP2 U A2258 -123.125 -62.295 13.535 1.00 0.01 O
ATOM 5 O5' U A2258 -121.629 -62.077 11.583 1.00 0.01 O
ATOM 6 C5' U A2258 -121.312 -61.927 10.219 1.00 0.01 C
ATOM 7 C4' U A2258 -119.833 -61.830 10.058 1.00 0.01 C
ATOM 8 O4' U A2258 -119.365 -60.691 10.796 1.00 0.01 O
ATOM 9 C3' U A2258 -119.055 -62.972 10.640 1.00 0.01 C
ATOM 10 O3' U A2258 -118.969 -64.036 9.766 1.00 0.01 O
ATOM 11 C2' U A2258 -117.712 -62.358 10.956 1.00 0.01 C
ATOM 12 O2' U A2258 -116.910 -62.294 9.790 1.00 0.01 O
ATOM 13 C1' U A2258 -118.109 -60.948 11.352 1.00 0.01 C
ATOM 14 N1 U A2258 -118.200 -60.746 12.825 1.00 0.01 N
ATOM 15 C2 U A2258 -117.112 -60.144 13.390 1.00 0.01 C
ATOM 16 O2 U A2258 -116.175 -59.884 12.677 1.00 0.01 O
ATOM 17 N3 U A2258 -117.138 -59.893 14.736 1.00 0.01 N
ATOM 18 C4 U A2258 -118.184 -60.168 15.570 1.00 0.01 C
ATOM 19 O4 U A2258 -118.093 -59.862 16.776 1.00 0.01 O
ATOM 20 C5 U A2258 -119.309 -60.786 14.926 1.00 0.01 C
ATOM 21 C6 U A2258 -119.292 -61.031 13.615 1.00 0.01 C
ATOM 22 P A A2259 -118.558 -65.454 10.309 1.00 0.01 P
ATOM 23 OP1 A A2259 -117.204 -65.347 10.839 1.00 0.01 O
ATOM 24 OP2 A A2259 -118.825 -66.420 9.239 1.00 0.01 O
ATOM 25 O5' A A2259 -119.569 -65.673 11.480 1.00 0.01 O
TER
ATOM 1 O3' U B2258 -118.969 -64.036 9.766 1.00 0.01 O
ATOM 2 P A B2259 -118.558 -65.454 10.309 1.00 0.01 P
ATOM 3 OP1 A B2259 -117.204 -65.347 10.839 1.00 0.01 O
ATOM 4 OP2 A B2259 -118.825 -66.420 9.239 1.00 0.01 O
ATOM 5 O5' A B2259 -119.569 -65.673 11.480 1.00 0.01 O
ATOM 6 C5' A B2259 -120.053 -66.957 11.778 1.00 0.01 C
ATOM 7 C4' A B2259 -120.435 -67.035 13.202 1.00 0.01 C
ATOM 8 O4' A B2259 -119.315 -66.599 13.995 1.00 0.01 O
ATOM 9 C3' A B2259 -121.597 -66.151 13.595 1.00 0.01 C
ATOM 10 O3' A B2259 -122.365 -66.811 14.565 1.00 0.01 O
ATOM 11 C2' A B2259 -120.946 -64.953 14.244 1.00 0.01 C
ATOM 12 O2' A B2259 -121.763 -64.364 15.227 1.00 0.01 O
ATOM 13 C1' A B2259 -119.712 -65.576 14.867 1.00 0.01 C
ATOM 14 N9 A B2259 -118.561 -64.677 15.059 1.00 0.01 N
ATOM 15 C8 A B2259 -117.480 -64.439 14.234 1.00 0.01 C
ATOM 16 N7 A B2259 -116.555 -63.647 14.725 1.00 0.01 N
ATOM 17 C5 A B2259 -117.038 -63.361 15.977 1.00 0.01 C
ATOM 18 C6 A B2259 -116.526 -62.607 17.020 1.00 0.01 C
ATOM 19 N6 A B2259 -115.392 -61.936 17.005 1.00 0.01 N
ATOM 20 N1 A B2259 -117.224 -62.526 18.135 1.00 0.01 N
ATOM 21 C2 A B2259 -118.373 -63.188 18.190 1.00 0.01 C
ATOM 22 N3 A B2259 -118.969 -63.947 17.295 1.00 0.01 N
ATOM 23 C4 A B2259 -118.234 -63.997 16.197 1.00 0.01 C
ATOM 24 P A B2260 -123.693 -67.529 14.143 1.00 0.01 P
ATOM 25 OP1 A B2260 -124.396 -66.637 13.227 1.00 0.01 O
ATOM 26 OP2 A B2260 -124.347 -67.951 15.361 1.00 0.01 O
ATOM 27 O5' A B2260 -123.187 -68.767 13.349 1.00 0.01 O
TER
Atoms:
C4: (-118.184,-60.168,15.570)
N3: (-117.138,-59.893,14.736)
OP1: (-123.928,-63.048,11.252)
OP2: (-123.125,-62.295,13.535)
C2: (-117.112,-60.144,13.390)
C1': (-118.109,-60.948,11.352)
C3': (-119.055,-62.972,10.640)
O5': (-121.629,-62.077,11.583)
O4': (-119.365,-60.691,10.796)
C5': (-121.312,-61.927,10.219)
P: (-123.117,-62.124,12.091)
C4': (-119.833,-61.830,10.058)
C2': (-117.712,-62.358,10.956)
O2': (-116.910,-62.294,9.790)
N1: (-118.200,-60.746,12.825)
O4: (-118.093,-59.862,16.776)
O2: (-116.175,-59.884,12.677)
C6: (-119.292,-61.031,13.615)
C5: (-119.309,-60.786,14.926)
O3': (-118.969,-64.036,9.766)
N3: (-117.138,-59.893,14.736)
OP1: (-123.928,-63.048,11.252)
OP2: (-123.125,-62.295,13.535)
C2: (-117.112,-60.144,13.390)
C1': (-118.109,-60.948,11.352)
C3': (-119.055,-62.972,10.640)
O5': (-121.629,-62.077,11.583)
O4': (-119.365,-60.691,10.796)
C5': (-121.312,-61.927,10.219)
P: (-123.117,-62.124,12.091)
C4': (-119.833,-61.830,10.058)
C2': (-117.712,-62.358,10.956)
O2': (-116.910,-62.294,9.790)
N1: (-118.200,-60.746,12.825)
O4: (-118.093,-59.862,16.776)
O2: (-116.175,-59.884,12.677)
C6: (-119.292,-61.031,13.615)
C5: (-119.309,-60.786,14.926)
O3': (-118.969,-64.036,9.766)
OP1: (-117.204,-65.347,10.839)
OP2: (-118.825,-66.420,9.239)
C3': (-121.597,-66.151,13.595)
C1': (-119.712,-65.576,14.867)
C5': (-120.053,-66.957,11.778)
O4': (-119.315,-66.599,13.995)
C8: (-117.480,-64.439,14.234)
O2': (-121.763,-64.364,15.227)
C6: (-116.526,-62.607,17.020)
C5: (-117.038,-63.361,15.977)
C4: (-118.234,-63.997,16.197)
P: (-118.558,-65.454,10.309)
C4': (-120.435,-67.035,13.202)
C2': (-120.946,-64.953,14.244)
C2: (-118.373,-63.188,18.190)
N1: (-117.224,-62.526,18.135)
N3: (-118.969,-63.947,17.295)
N6: (-115.392,-61.936,17.005)
N7: (-116.555,-63.647,14.725)
N9: (-118.561,-64.677,15.059)
O5': (-119.569,-65.673,11.480)
O3': (-122.365,-66.811,14.565)
OP2: (-118.825,-66.420,9.239)
C3': (-121.597,-66.151,13.595)
C1': (-119.712,-65.576,14.867)
C5': (-120.053,-66.957,11.778)
O4': (-119.315,-66.599,13.995)
C8: (-117.480,-64.439,14.234)
O2': (-121.763,-64.364,15.227)
C6: (-116.526,-62.607,17.020)
C5: (-117.038,-63.361,15.977)
C4: (-118.234,-63.997,16.197)
P: (-118.558,-65.454,10.309)
C4': (-120.435,-67.035,13.202)
C2': (-120.946,-64.953,14.244)
C2: (-118.373,-63.188,18.190)
N1: (-117.224,-62.526,18.135)
N3: (-118.969,-63.947,17.295)
N6: (-115.392,-61.936,17.005)
N7: (-116.555,-63.647,14.725)
N9: (-118.561,-64.677,15.059)
O5': (-119.569,-65.673,11.480)
O3': (-122.365,-66.811,14.565)
Image (generated by PyMOL):