Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DVZ:A6:A7
Extra
PDB:
ATOM 1 O3' C A 5 -5.301 56.053 -19.434 1.00 8.58 O
ATOM 2 P U A 6 -4.230 54.922 -19.077 1.00 9.09 P
ATOM 3 OP1 U A 6 -2.964 55.321 -19.733 1.00 11.31 O
ATOM 4 OP2 U A 6 -4.824 53.598 -19.355 1.00 9.68 O
ATOM 5 O5' U A 6 -4.065 55.026 -17.488 1.00 8.68 O
ATOM 6 C5' U A 6 -3.460 56.157 -16.887 1.00 8.93 C
ATOM 7 C4' U A 6 -3.610 56.063 -15.382 1.00 8.36 C
ATOM 8 O4' U A 6 -5.015 56.097 -15.040 1.00 8.14 O
ATOM 9 C3' U A 6 -3.125 54.758 -14.770 1.00 7.90 C
ATOM 10 O3' U A 6 -1.720 54.820 -14.557 1.00 8.55 O
ATOM 11 C2' U A 6 -3.898 54.738 -13.457 1.00 8.54 C
ATOM 12 O2' U A 6 -3.330 55.592 -12.488 1.00 8.94 O
ATOM 13 C1' U A 6 -5.245 55.299 -13.895 1.00 8.37 C
ATOM 14 N1 U A 6 -6.236 54.238 -14.221 1.00 7.72 N
ATOM 15 C2 U A 6 -7.093 53.826 -13.226 1.00 8.39 C
ATOM 16 O2 U A 6 -7.071 54.297 -12.106 1.00 9.42 O
ATOM 17 N3 U A 6 -7.980 52.846 -13.588 1.00 8.36 N
ATOM 18 C4 U A 6 -8.084 52.244 -14.827 1.00 8.57 C
ATOM 19 O4 U A 6 -8.930 51.374 -15.004 1.00 9.58 O
ATOM 20 C5 U A 6 -7.150 52.722 -15.816 1.00 8.14 C
ATOM 21 C6 U A 6 -6.278 53.681 -15.482 1.00 8.16 C
ATOM 22 P A A 7 -0.843 53.482 -14.478 1.00 10.72 P
ATOM 23 OP1 A A 7 -1.386 52.641 -13.391 1.00 11.43 O
ATOM 24 OP2 A A 7 0.583 53.887 -14.486 1.00 12.11 O
ATOM 25 O5' A A 7 -1.178 52.774 -15.870 1.00 10.33 O
TER
ATOM 1 O3' U B 6 -1.720 54.820 -14.557 1.00 8.55 O
ATOM 2 P A B 7 -0.843 53.482 -14.478 1.00 10.72 P
ATOM 3 OP1 A B 7 -1.386 52.641 -13.391 1.00 11.43 O
ATOM 4 OP2 A B 7 0.583 53.887 -14.486 1.00 12.11 O
ATOM 5 O5' A B 7 -1.178 52.774 -15.870 1.00 10.33 O
ATOM 6 C5' A B 7 -0.439 51.628 -16.267 1.00 10.95 C
ATOM 7 C4' A B 7 -1.328 50.581 -16.917 1.00 9.69 C
ATOM 8 O4' A B 7 -2.172 49.988 -15.896 1.00 9.23 O
ATOM 9 C3' A B 7 -2.283 51.081 -17.997 1.00 10.92 C
ATOM 10 C2' A B 7 -3.562 51.310 -17.208 1.00 9.32 C
ATOM 11 O2' A B 7 -4.718 51.266 -18.023 1.00 10.06 O
ATOM 12 C1' A B 7 -3.518 50.086 -16.303 1.00 8.74 C
ATOM 13 N9 A B 7 -4.342 50.224 -15.111 1.00 8.16 N
ATOM 14 C8 A B 7 -4.093 51.033 -14.039 1.00 8.12 C
ATOM 15 N7 A B 7 -5.006 50.964 -13.100 1.00 8.56 N
ATOM 16 C5 A B 7 -5.917 50.044 -13.592 1.00 8.15 C
ATOM 17 C6 A B 7 -7.118 49.531 -13.068 1.00 9.11 C
ATOM 18 N6 A B 7 -7.615 49.897 -11.883 1.00 9.71 N
ATOM 19 N1 A B 7 -7.788 48.626 -13.812 1.00 9.71 N
ATOM 20 C2 A B 7 -7.284 48.266 -14.997 1.00 10.23 C
ATOM 21 N3 A B 7 -6.168 48.679 -15.594 1.00 9.28 N
ATOM 22 C4 A B 7 -5.523 49.576 -14.831 1.00 8.84 C
ATOM 23 O3' A B 7 -2.497 50.069 -18.968 0.55 12.36 O
ATOM 24 P G B 8 -1.566 49.936 -20.262 1.00 13.71 P
ATOM 25 OP1 G B 8 -0.163 50.173 -19.859 1.00 15.11 O
ATOM 26 OP2 G B 8 -2.173 50.709 -21.361 1.00 13.71 O
ATOM 27 O5' G B 8 -1.782 48.402 -20.668 1.00 17.18 O
TER
ATOM 2 P U A 6 -4.230 54.922 -19.077 1.00 9.09 P
ATOM 3 OP1 U A 6 -2.964 55.321 -19.733 1.00 11.31 O
ATOM 4 OP2 U A 6 -4.824 53.598 -19.355 1.00 9.68 O
ATOM 5 O5' U A 6 -4.065 55.026 -17.488 1.00 8.68 O
ATOM 6 C5' U A 6 -3.460 56.157 -16.887 1.00 8.93 C
ATOM 7 C4' U A 6 -3.610 56.063 -15.382 1.00 8.36 C
ATOM 8 O4' U A 6 -5.015 56.097 -15.040 1.00 8.14 O
ATOM 9 C3' U A 6 -3.125 54.758 -14.770 1.00 7.90 C
ATOM 10 O3' U A 6 -1.720 54.820 -14.557 1.00 8.55 O
ATOM 11 C2' U A 6 -3.898 54.738 -13.457 1.00 8.54 C
ATOM 12 O2' U A 6 -3.330 55.592 -12.488 1.00 8.94 O
ATOM 13 C1' U A 6 -5.245 55.299 -13.895 1.00 8.37 C
ATOM 14 N1 U A 6 -6.236 54.238 -14.221 1.00 7.72 N
ATOM 15 C2 U A 6 -7.093 53.826 -13.226 1.00 8.39 C
ATOM 16 O2 U A 6 -7.071 54.297 -12.106 1.00 9.42 O
ATOM 17 N3 U A 6 -7.980 52.846 -13.588 1.00 8.36 N
ATOM 18 C4 U A 6 -8.084 52.244 -14.827 1.00 8.57 C
ATOM 19 O4 U A 6 -8.930 51.374 -15.004 1.00 9.58 O
ATOM 20 C5 U A 6 -7.150 52.722 -15.816 1.00 8.14 C
ATOM 21 C6 U A 6 -6.278 53.681 -15.482 1.00 8.16 C
ATOM 22 P A A 7 -0.843 53.482 -14.478 1.00 10.72 P
ATOM 23 OP1 A A 7 -1.386 52.641 -13.391 1.00 11.43 O
ATOM 24 OP2 A A 7 0.583 53.887 -14.486 1.00 12.11 O
ATOM 25 O5' A A 7 -1.178 52.774 -15.870 1.00 10.33 O
TER
ATOM 1 O3' U B 6 -1.720 54.820 -14.557 1.00 8.55 O
ATOM 2 P A B 7 -0.843 53.482 -14.478 1.00 10.72 P
ATOM 3 OP1 A B 7 -1.386 52.641 -13.391 1.00 11.43 O
ATOM 4 OP2 A B 7 0.583 53.887 -14.486 1.00 12.11 O
ATOM 5 O5' A B 7 -1.178 52.774 -15.870 1.00 10.33 O
ATOM 6 C5' A B 7 -0.439 51.628 -16.267 1.00 10.95 C
ATOM 7 C4' A B 7 -1.328 50.581 -16.917 1.00 9.69 C
ATOM 8 O4' A B 7 -2.172 49.988 -15.896 1.00 9.23 O
ATOM 9 C3' A B 7 -2.283 51.081 -17.997 1.00 10.92 C
ATOM 10 C2' A B 7 -3.562 51.310 -17.208 1.00 9.32 C
ATOM 11 O2' A B 7 -4.718 51.266 -18.023 1.00 10.06 O
ATOM 12 C1' A B 7 -3.518 50.086 -16.303 1.00 8.74 C
ATOM 13 N9 A B 7 -4.342 50.224 -15.111 1.00 8.16 N
ATOM 14 C8 A B 7 -4.093 51.033 -14.039 1.00 8.12 C
ATOM 15 N7 A B 7 -5.006 50.964 -13.100 1.00 8.56 N
ATOM 16 C5 A B 7 -5.917 50.044 -13.592 1.00 8.15 C
ATOM 17 C6 A B 7 -7.118 49.531 -13.068 1.00 9.11 C
ATOM 18 N6 A B 7 -7.615 49.897 -11.883 1.00 9.71 N
ATOM 19 N1 A B 7 -7.788 48.626 -13.812 1.00 9.71 N
ATOM 20 C2 A B 7 -7.284 48.266 -14.997 1.00 10.23 C
ATOM 21 N3 A B 7 -6.168 48.679 -15.594 1.00 9.28 N
ATOM 22 C4 A B 7 -5.523 49.576 -14.831 1.00 8.84 C
ATOM 23 O3' A B 7 -2.497 50.069 -18.968 0.55 12.36 O
ATOM 24 P G B 8 -1.566 49.936 -20.262 1.00 13.71 P
ATOM 25 OP1 G B 8 -0.163 50.173 -19.859 1.00 15.11 O
ATOM 26 OP2 G B 8 -2.173 50.709 -21.361 1.00 13.71 O
ATOM 27 O5' G B 8 -1.782 48.402 -20.668 1.00 17.18 O
TER
Atoms:
C4: (-8.084,52.244,-14.827)
N3: (-7.980,52.846,-13.588)
OP1: (-2.964,55.321,-19.733)
OP2: (-4.824,53.598,-19.355)
C2: (-7.093,53.826,-13.226)
C1': (-5.245,55.299,-13.895)
C3': (-3.125,54.758,-14.770)
O5': (-4.065,55.026,-17.488)
O4': (-5.015,56.097,-15.040)
C5': (-3.460,56.157,-16.887)
P: (-4.230,54.922,-19.077)
C4': (-3.610,56.063,-15.382)
C2': (-3.898,54.738,-13.457)
O2': (-3.330,55.592,-12.488)
N1: (-6.236,54.238,-14.221)
O4: (-8.930,51.374,-15.004)
O2: (-7.071,54.297,-12.106)
C6: (-6.278,53.681,-15.482)
C5: (-7.150,52.722,-15.816)
O3': (-1.720,54.820,-14.557)
N3: (-7.980,52.846,-13.588)
OP1: (-2.964,55.321,-19.733)
OP2: (-4.824,53.598,-19.355)
C2: (-7.093,53.826,-13.226)
C1': (-5.245,55.299,-13.895)
C3': (-3.125,54.758,-14.770)
O5': (-4.065,55.026,-17.488)
O4': (-5.015,56.097,-15.040)
C5': (-3.460,56.157,-16.887)
P: (-4.230,54.922,-19.077)
C4': (-3.610,56.063,-15.382)
C2': (-3.898,54.738,-13.457)
O2': (-3.330,55.592,-12.488)
N1: (-6.236,54.238,-14.221)
O4: (-8.930,51.374,-15.004)
O2: (-7.071,54.297,-12.106)
C6: (-6.278,53.681,-15.482)
C5: (-7.150,52.722,-15.816)
O3': (-1.720,54.820,-14.557)
OP1: (-1.386,52.641,-13.391)
OP2: (0.583,53.887,-14.486)
C3': (-2.283,51.081,-17.997)
C1': (-3.518,50.086,-16.303)
C5': (-0.439,51.628,-16.267)
O4': (-2.172,49.988,-15.896)
C8: (-4.093,51.033,-14.039)
O2': (-4.718,51.266,-18.023)
C6: (-7.118,49.531,-13.068)
C5: (-5.917,50.044,-13.592)
C4: (-5.523,49.576,-14.831)
P: (-0.843,53.482,-14.478)
C4': (-1.328,50.581,-16.917)
C2': (-3.562,51.310,-17.208)
C2: (-7.284,48.266,-14.997)
N1: (-7.788,48.626,-13.812)
N3: (-6.168,48.679,-15.594)
N6: (-7.615,49.897,-11.883)
N7: (-5.006,50.964,-13.100)
N9: (-4.342,50.224,-15.111)
O5': (-1.178,52.774,-15.870)
O3': (-2.497,50.069,-18.968)
OP2: (0.583,53.887,-14.486)
C3': (-2.283,51.081,-17.997)
C1': (-3.518,50.086,-16.303)
C5': (-0.439,51.628,-16.267)
O4': (-2.172,49.988,-15.896)
C8: (-4.093,51.033,-14.039)
O2': (-4.718,51.266,-18.023)
C6: (-7.118,49.531,-13.068)
C5: (-5.917,50.044,-13.592)
C4: (-5.523,49.576,-14.831)
P: (-0.843,53.482,-14.478)
C4': (-1.328,50.581,-16.917)
C2': (-3.562,51.310,-17.208)
C2: (-7.284,48.266,-14.997)
N1: (-7.788,48.626,-13.812)
N3: (-6.168,48.679,-15.594)
N6: (-7.615,49.897,-11.883)
N7: (-5.006,50.964,-13.100)
N9: (-4.342,50.224,-15.111)
O5': (-1.178,52.774,-15.870)
O3': (-2.497,50.069,-18.968)
Image (generated by PyMOL):