Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12089:12087
Extra
PDB:
ATOM 1 O3' A A2088 -2.338 5.570 74.649 1.00 54.26 O
ATOM 2 P U A2089 -3.314 4.645 73.761 1.00 50.98 P
ATOM 3 OP1 U A2089 -3.361 5.279 72.414 1.00 51.03 O
ATOM 4 OP2 U A2089 -4.596 4.501 74.507 1.00 51.25 O
ATOM 5 O5' U A2089 -2.577 3.224 73.688 1.00 50.69 O
ATOM 6 C5' U A2089 -2.417 2.430 74.851 1.00 50.61 C
ATOM 7 C4' U A2089 -2.785 0.998 74.614 1.00 50.56 C
ATOM 8 O4' U A2089 -3.637 0.577 75.705 1.00 50.73 O
ATOM 9 C3' U A2089 -3.565 0.720 73.343 1.00 50.67 C
ATOM 10 O3' U A2089 -3.289 -0.613 72.891 1.00 50.50 O
ATOM 11 C2' U A2089 -5.001 0.807 73.844 1.00 50.99 C
ATOM 12 O2' U A2089 -5.964 0.147 73.050 1.00 51.13 O
ATOM 13 C1' U A2089 -4.888 0.183 75.219 1.00 50.95 C
ATOM 14 N1 U A2089 -5.898 0.662 76.142 1.00 51.23 N
ATOM 15 C2 U A2089 -6.716 -0.256 76.774 1.00 51.36 C
ATOM 16 O2 U A2089 -6.566 -1.437 76.602 1.00 51.24 O
ATOM 17 N3 U A2089 -7.698 0.238 77.611 1.00 51.65 N
ATOM 18 C4 U A2089 -7.875 1.591 77.807 1.00 51.81 C
ATOM 19 O4 U A2089 -8.752 1.954 78.549 1.00 52.08 O
ATOM 20 C5 U A2089 -6.995 2.493 77.117 1.00 51.67 C
ATOM 21 C6 U A2089 -6.051 2.006 76.319 1.00 51.39 C
ATOM 22 P G A2090 -2.691 -0.875 71.415 1.00 44.08 P
ATOM 23 OP1 G A2090 -2.477 -2.294 71.273 1.00 43.95 O
ATOM 24 OP2 G A2090 -1.545 0.027 71.227 1.00 43.91 O
ATOM 25 O5' G A2090 -3.850 -0.424 70.464 1.00 44.35 O
TER
ATOM 1 O3' A B2086 -8.123 5.988 68.832 1.00 41.63 O
ATOM 2 P A B2087 -7.579 7.367 69.396 1.00 48.25 P
ATOM 3 OP1 A B2087 -8.455 8.414 68.871 1.00 48.59 O
ATOM 4 OP2 A B2087 -6.186 7.422 69.049 1.00 47.94 O
ATOM 5 O5' A B2087 -7.742 7.234 70.964 1.00 48.27 O
ATOM 6 C5' A B2087 -8.754 7.942 71.633 1.00 48.59 C
ATOM 7 C4' A B2087 -8.816 7.579 73.080 1.00 48.58 C
ATOM 8 O4' A B2087 -9.347 6.274 73.221 1.00 48.55 O
ATOM 9 C3' A B2087 -7.500 7.509 73.813 1.00 48.28 C
ATOM 10 O3' A B2087 -7.066 8.772 74.201 1.00 48.35 O
ATOM 11 C2' A B2087 -7.774 6.563 74.989 1.00 48.26 C
ATOM 12 O2' A B2087 -8.208 7.277 76.136 1.00 48.48 O
ATOM 13 C1' A B2087 -8.954 5.750 74.464 1.00 48.42 C
ATOM 14 N9 A B2087 -8.666 4.341 74.285 1.00 48.20 N
ATOM 15 C8 A B2087 -7.774 3.773 73.437 1.00 47.92 C
ATOM 16 N7 A B2087 -7.856 2.469 73.440 1.00 47.82 N
ATOM 17 C5 A B2087 -8.870 2.226 74.340 1.00 48.05 C
ATOM 18 C6 A B2087 -9.420 1.046 74.772 1.00 48.08 C
ATOM 19 N6 A B2087 -8.956 -0.106 74.321 1.00 47.87 N
ATOM 20 N1 A B2087 -10.442 1.127 75.657 1.00 48.35 N
ATOM 21 C2 A B2087 -10.868 2.332 76.085 1.00 48.57 C
ATOM 22 N3 A B2087 -10.423 3.532 75.750 1.00 48.57 N
ATOM 23 C4 A B2087 -9.417 3.374 74.864 1.00 48.29 C
ATOM 24 P A B2088 -5.735 9.344 73.576 1.00 55.41 P
ATOM 25 OP1 A B2088 -5.561 10.700 74.137 1.00 55.57 O
ATOM 26 OP2 A B2088 -5.815 9.179 72.105 1.00 55.38 O
ATOM 27 O5' A B2088 -4.654 8.363 74.164 1.00 55.06 O
TER
ATOM 2 P U A2089 -3.314 4.645 73.761 1.00 50.98 P
ATOM 3 OP1 U A2089 -3.361 5.279 72.414 1.00 51.03 O
ATOM 4 OP2 U A2089 -4.596 4.501 74.507 1.00 51.25 O
ATOM 5 O5' U A2089 -2.577 3.224 73.688 1.00 50.69 O
ATOM 6 C5' U A2089 -2.417 2.430 74.851 1.00 50.61 C
ATOM 7 C4' U A2089 -2.785 0.998 74.614 1.00 50.56 C
ATOM 8 O4' U A2089 -3.637 0.577 75.705 1.00 50.73 O
ATOM 9 C3' U A2089 -3.565 0.720 73.343 1.00 50.67 C
ATOM 10 O3' U A2089 -3.289 -0.613 72.891 1.00 50.50 O
ATOM 11 C2' U A2089 -5.001 0.807 73.844 1.00 50.99 C
ATOM 12 O2' U A2089 -5.964 0.147 73.050 1.00 51.13 O
ATOM 13 C1' U A2089 -4.888 0.183 75.219 1.00 50.95 C
ATOM 14 N1 U A2089 -5.898 0.662 76.142 1.00 51.23 N
ATOM 15 C2 U A2089 -6.716 -0.256 76.774 1.00 51.36 C
ATOM 16 O2 U A2089 -6.566 -1.437 76.602 1.00 51.24 O
ATOM 17 N3 U A2089 -7.698 0.238 77.611 1.00 51.65 N
ATOM 18 C4 U A2089 -7.875 1.591 77.807 1.00 51.81 C
ATOM 19 O4 U A2089 -8.752 1.954 78.549 1.00 52.08 O
ATOM 20 C5 U A2089 -6.995 2.493 77.117 1.00 51.67 C
ATOM 21 C6 U A2089 -6.051 2.006 76.319 1.00 51.39 C
ATOM 22 P G A2090 -2.691 -0.875 71.415 1.00 44.08 P
ATOM 23 OP1 G A2090 -2.477 -2.294 71.273 1.00 43.95 O
ATOM 24 OP2 G A2090 -1.545 0.027 71.227 1.00 43.91 O
ATOM 25 O5' G A2090 -3.850 -0.424 70.464 1.00 44.35 O
TER
ATOM 1 O3' A B2086 -8.123 5.988 68.832 1.00 41.63 O
ATOM 2 P A B2087 -7.579 7.367 69.396 1.00 48.25 P
ATOM 3 OP1 A B2087 -8.455 8.414 68.871 1.00 48.59 O
ATOM 4 OP2 A B2087 -6.186 7.422 69.049 1.00 47.94 O
ATOM 5 O5' A B2087 -7.742 7.234 70.964 1.00 48.27 O
ATOM 6 C5' A B2087 -8.754 7.942 71.633 1.00 48.59 C
ATOM 7 C4' A B2087 -8.816 7.579 73.080 1.00 48.58 C
ATOM 8 O4' A B2087 -9.347 6.274 73.221 1.00 48.55 O
ATOM 9 C3' A B2087 -7.500 7.509 73.813 1.00 48.28 C
ATOM 10 O3' A B2087 -7.066 8.772 74.201 1.00 48.35 O
ATOM 11 C2' A B2087 -7.774 6.563 74.989 1.00 48.26 C
ATOM 12 O2' A B2087 -8.208 7.277 76.136 1.00 48.48 O
ATOM 13 C1' A B2087 -8.954 5.750 74.464 1.00 48.42 C
ATOM 14 N9 A B2087 -8.666 4.341 74.285 1.00 48.20 N
ATOM 15 C8 A B2087 -7.774 3.773 73.437 1.00 47.92 C
ATOM 16 N7 A B2087 -7.856 2.469 73.440 1.00 47.82 N
ATOM 17 C5 A B2087 -8.870 2.226 74.340 1.00 48.05 C
ATOM 18 C6 A B2087 -9.420 1.046 74.772 1.00 48.08 C
ATOM 19 N6 A B2087 -8.956 -0.106 74.321 1.00 47.87 N
ATOM 20 N1 A B2087 -10.442 1.127 75.657 1.00 48.35 N
ATOM 21 C2 A B2087 -10.868 2.332 76.085 1.00 48.57 C
ATOM 22 N3 A B2087 -10.423 3.532 75.750 1.00 48.57 N
ATOM 23 C4 A B2087 -9.417 3.374 74.864 1.00 48.29 C
ATOM 24 P A B2088 -5.735 9.344 73.576 1.00 55.41 P
ATOM 25 OP1 A B2088 -5.561 10.700 74.137 1.00 55.57 O
ATOM 26 OP2 A B2088 -5.815 9.179 72.105 1.00 55.38 O
ATOM 27 O5' A B2088 -4.654 8.363 74.164 1.00 55.06 O
TER
Atoms:
C4: (-7.875,1.591,77.807)
N3: (-7.698,0.238,77.611)
OP1: (-3.361,5.279,72.414)
OP2: (-4.596,4.501,74.507)
C2: (-6.716,-0.256,76.774)
C1': (-4.888,0.183,75.219)
C3': (-3.565,0.720,73.343)
O5': (-2.577,3.224,73.688)
O4': (-3.637,0.577,75.705)
C5': (-2.417,2.430,74.851)
P: (-3.314,4.645,73.761)
C4': (-2.785,0.998,74.614)
C2': (-5.001,0.807,73.844)
O2': (-5.964,0.147,73.050)
N1: (-5.898,0.662,76.142)
O4: (-8.752,1.954,78.549)
O2: (-6.566,-1.437,76.602)
C6: (-6.051,2.006,76.319)
C5: (-6.995,2.493,77.117)
O3': (-3.289,-0.613,72.891)
N3: (-7.698,0.238,77.611)
OP1: (-3.361,5.279,72.414)
OP2: (-4.596,4.501,74.507)
C2: (-6.716,-0.256,76.774)
C1': (-4.888,0.183,75.219)
C3': (-3.565,0.720,73.343)
O5': (-2.577,3.224,73.688)
O4': (-3.637,0.577,75.705)
C5': (-2.417,2.430,74.851)
P: (-3.314,4.645,73.761)
C4': (-2.785,0.998,74.614)
C2': (-5.001,0.807,73.844)
O2': (-5.964,0.147,73.050)
N1: (-5.898,0.662,76.142)
O4: (-8.752,1.954,78.549)
O2: (-6.566,-1.437,76.602)
C6: (-6.051,2.006,76.319)
C5: (-6.995,2.493,77.117)
O3': (-3.289,-0.613,72.891)
OP1: (-8.455,8.414,68.871)
OP2: (-6.186,7.422,69.049)
C3': (-7.500,7.509,73.813)
C1': (-8.954,5.750,74.464)
C5': (-8.754,7.942,71.633)
O4': (-9.347,6.274,73.221)
C8: (-7.774,3.773,73.437)
O2': (-8.208,7.277,76.136)
C6: (-9.420,1.046,74.772)
C5: (-8.870,2.226,74.340)
C4: (-9.417,3.374,74.864)
P: (-7.579,7.367,69.396)
C4': (-8.816,7.579,73.080)
C2': (-7.774,6.563,74.989)
C2: (-10.868,2.332,76.085)
N1: (-10.442,1.127,75.657)
N3: (-10.423,3.532,75.750)
N6: (-8.956,-0.106,74.321)
N7: (-7.856,2.469,73.440)
N9: (-8.666,4.341,74.285)
O5': (-7.742,7.234,70.964)
O3': (-7.066,8.772,74.201)
OP2: (-6.186,7.422,69.049)
C3': (-7.500,7.509,73.813)
C1': (-8.954,5.750,74.464)
C5': (-8.754,7.942,71.633)
O4': (-9.347,6.274,73.221)
C8: (-7.774,3.773,73.437)
O2': (-8.208,7.277,76.136)
C6: (-9.420,1.046,74.772)
C5: (-8.870,2.226,74.340)
C4: (-9.417,3.374,74.864)
P: (-7.579,7.367,69.396)
C4': (-8.816,7.579,73.080)
C2': (-7.774,6.563,74.989)
C2: (-10.868,2.332,76.085)
N1: (-10.442,1.127,75.657)
N3: (-10.423,3.532,75.750)
N6: (-8.956,-0.106,74.321)
N7: (-7.856,2.469,73.440)
N9: (-8.666,4.341,74.285)
O5': (-7.742,7.234,70.964)
O3': (-7.066,8.772,74.201)
Image (generated by PyMOL):