Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1904:A1911
Extra
PDB:
ATOM 1 O3' G A1903 -107.485 -4.285 -5.485 1.00 37.28 O
ATOM 2 P U A1904 -106.908 -4.492 -6.962 1.00 41.32 P
ATOM 3 OP1 U A1904 -108.063 -4.501 -7.885 1.00 41.32 O
ATOM 4 OP2 U A1904 -106.012 -5.673 -6.925 1.00 41.32 O
ATOM 5 O5' U A1904 -106.063 -3.167 -7.165 1.00 41.32 O
ATOM 6 C5' U A1904 -106.529 -1.944 -6.624 1.00 41.32 C
ATOM 7 C4' U A1904 -105.443 -0.914 -6.584 1.00 41.32 C
ATOM 8 O4' U A1904 -104.510 -1.221 -5.528 1.00 41.32 O
ATOM 9 C3' U A1904 -104.583 -0.831 -7.818 1.00 41.32 C
ATOM 10 O3' U A1904 -105.202 -0.108 -8.848 1.00 41.32 O
ATOM 11 C2' U A1904 -103.318 -0.180 -7.298 1.00 41.32 C
ATOM 12 O2' U A1904 -103.486 1.227 -7.187 1.00 41.32 O
ATOM 13 C1' U A1904 -103.224 -0.772 -5.890 1.00 41.32 C
ATOM 14 N1 U A1904 -102.268 -1.909 -5.807 1.00 41.23 N
ATOM 15 C2 U A1904 -100.939 -1.553 -5.624 1.00 41.23 C
ATOM 16 O2 U A1904 -100.552 -0.397 -5.566 1.00 41.23 O
ATOM 17 N3 U A1904 -100.067 -2.604 -5.536 1.00 41.23 N
ATOM 18 C4 U A1904 -100.378 -3.941 -5.600 1.00 41.23 C
ATOM 19 O4 U A1904 -99.450 -4.734 -5.501 1.00 41.23 O
ATOM 20 C5 U A1904 -101.768 -4.251 -5.775 1.00 41.23 C
ATOM 21 C6 U A1904 -102.648 -3.242 -5.867 1.00 41.23 C
ATOM 22 P A A1905 -104.946 -0.526 -10.364 1.00 28.49 P
ATOM 23 OP1 A A1905 -105.973 0.165 -11.203 1.00 28.49 O
ATOM 24 OP2 A A1905 -104.874 -2.011 -10.392 1.00 28.49 O
ATOM 25 O5' A A1905 -103.508 0.089 -10.651 1.00 28.49 O
TER
ATOM 1 O3' U B1910 -94.438 -8.723 -8.718 1.00 30.02 O
ATOM 2 P A B1911 -94.870 -8.410 -7.211 1.00 31.13 P
ATOM 3 OP1 A B1911 -93.796 -8.908 -6.325 1.00 31.14 O
ATOM 4 OP2 A B1911 -96.242 -8.926 -7.041 1.00 31.14 O
ATOM 5 O5' A B1911 -94.897 -6.831 -7.176 1.00 31.13 O
ATOM 6 C5' A B1911 -93.714 -6.074 -7.385 1.00 31.13 C
ATOM 7 C4' A B1911 -93.982 -4.607 -7.217 1.00 31.13 C
ATOM 8 O4' A B1911 -95.048 -4.223 -8.124 1.00 31.13 O
ATOM 9 C3' A B1911 -94.443 -4.204 -5.830 1.00 31.14 C
ATOM 10 O3' A B1911 -93.916 -2.927 -5.511 1.00 31.14 O
ATOM 11 C2' A B1911 -95.959 -4.124 -5.973 1.00 31.14 C
ATOM 12 O2' A B1911 -96.579 -3.244 -5.073 1.00 31.13 O
ATOM 13 C1' A B1911 -96.115 -3.650 -7.403 1.00 31.14 C
ATOM 14 N9 A B1911 -97.369 -4.056 -8.037 1.00 31.95 N
ATOM 15 C8 A B1911 -97.713 -5.286 -8.508 1.00 31.95 C
ATOM 16 N7 A B1911 -98.908 -5.329 -9.053 1.00 31.95 N
ATOM 17 C5 A B1911 -99.393 -4.041 -8.939 1.00 31.95 C
ATOM 18 C6 A B1911 -100.611 -3.431 -9.321 1.00 31.95 C
ATOM 19 N6 A B1911 -101.636 -4.038 -9.923 1.00 31.95 N
ATOM 20 N1 A B1911 -100.761 -2.120 -9.070 1.00 31.95 N
ATOM 21 C2 A B1911 -99.753 -1.479 -8.463 1.00 31.95 C
ATOM 22 N3 A B1911 -98.572 -1.949 -8.055 1.00 31.95 N
ATOM 23 C4 A B1911 -98.445 -3.254 -8.323 1.00 31.95 C
ATOM 24 P A B1912 -92.596 -2.812 -4.603 1.00 23.80 P
ATOM 25 OP1 A B1912 -91.434 -3.220 -5.448 1.00 23.80 O
ATOM 26 OP2 A B1912 -92.872 -3.558 -3.348 1.00 23.80 O
ATOM 27 O5' A B1912 -92.522 -1.247 -4.291 1.00 23.80 O
TER
ATOM 2 P U A1904 -106.908 -4.492 -6.962 1.00 41.32 P
ATOM 3 OP1 U A1904 -108.063 -4.501 -7.885 1.00 41.32 O
ATOM 4 OP2 U A1904 -106.012 -5.673 -6.925 1.00 41.32 O
ATOM 5 O5' U A1904 -106.063 -3.167 -7.165 1.00 41.32 O
ATOM 6 C5' U A1904 -106.529 -1.944 -6.624 1.00 41.32 C
ATOM 7 C4' U A1904 -105.443 -0.914 -6.584 1.00 41.32 C
ATOM 8 O4' U A1904 -104.510 -1.221 -5.528 1.00 41.32 O
ATOM 9 C3' U A1904 -104.583 -0.831 -7.818 1.00 41.32 C
ATOM 10 O3' U A1904 -105.202 -0.108 -8.848 1.00 41.32 O
ATOM 11 C2' U A1904 -103.318 -0.180 -7.298 1.00 41.32 C
ATOM 12 O2' U A1904 -103.486 1.227 -7.187 1.00 41.32 O
ATOM 13 C1' U A1904 -103.224 -0.772 -5.890 1.00 41.32 C
ATOM 14 N1 U A1904 -102.268 -1.909 -5.807 1.00 41.23 N
ATOM 15 C2 U A1904 -100.939 -1.553 -5.624 1.00 41.23 C
ATOM 16 O2 U A1904 -100.552 -0.397 -5.566 1.00 41.23 O
ATOM 17 N3 U A1904 -100.067 -2.604 -5.536 1.00 41.23 N
ATOM 18 C4 U A1904 -100.378 -3.941 -5.600 1.00 41.23 C
ATOM 19 O4 U A1904 -99.450 -4.734 -5.501 1.00 41.23 O
ATOM 20 C5 U A1904 -101.768 -4.251 -5.775 1.00 41.23 C
ATOM 21 C6 U A1904 -102.648 -3.242 -5.867 1.00 41.23 C
ATOM 22 P A A1905 -104.946 -0.526 -10.364 1.00 28.49 P
ATOM 23 OP1 A A1905 -105.973 0.165 -11.203 1.00 28.49 O
ATOM 24 OP2 A A1905 -104.874 -2.011 -10.392 1.00 28.49 O
ATOM 25 O5' A A1905 -103.508 0.089 -10.651 1.00 28.49 O
TER
ATOM 1 O3' U B1910 -94.438 -8.723 -8.718 1.00 30.02 O
ATOM 2 P A B1911 -94.870 -8.410 -7.211 1.00 31.13 P
ATOM 3 OP1 A B1911 -93.796 -8.908 -6.325 1.00 31.14 O
ATOM 4 OP2 A B1911 -96.242 -8.926 -7.041 1.00 31.14 O
ATOM 5 O5' A B1911 -94.897 -6.831 -7.176 1.00 31.13 O
ATOM 6 C5' A B1911 -93.714 -6.074 -7.385 1.00 31.13 C
ATOM 7 C4' A B1911 -93.982 -4.607 -7.217 1.00 31.13 C
ATOM 8 O4' A B1911 -95.048 -4.223 -8.124 1.00 31.13 O
ATOM 9 C3' A B1911 -94.443 -4.204 -5.830 1.00 31.14 C
ATOM 10 O3' A B1911 -93.916 -2.927 -5.511 1.00 31.14 O
ATOM 11 C2' A B1911 -95.959 -4.124 -5.973 1.00 31.14 C
ATOM 12 O2' A B1911 -96.579 -3.244 -5.073 1.00 31.13 O
ATOM 13 C1' A B1911 -96.115 -3.650 -7.403 1.00 31.14 C
ATOM 14 N9 A B1911 -97.369 -4.056 -8.037 1.00 31.95 N
ATOM 15 C8 A B1911 -97.713 -5.286 -8.508 1.00 31.95 C
ATOM 16 N7 A B1911 -98.908 -5.329 -9.053 1.00 31.95 N
ATOM 17 C5 A B1911 -99.393 -4.041 -8.939 1.00 31.95 C
ATOM 18 C6 A B1911 -100.611 -3.431 -9.321 1.00 31.95 C
ATOM 19 N6 A B1911 -101.636 -4.038 -9.923 1.00 31.95 N
ATOM 20 N1 A B1911 -100.761 -2.120 -9.070 1.00 31.95 N
ATOM 21 C2 A B1911 -99.753 -1.479 -8.463 1.00 31.95 C
ATOM 22 N3 A B1911 -98.572 -1.949 -8.055 1.00 31.95 N
ATOM 23 C4 A B1911 -98.445 -3.254 -8.323 1.00 31.95 C
ATOM 24 P A B1912 -92.596 -2.812 -4.603 1.00 23.80 P
ATOM 25 OP1 A B1912 -91.434 -3.220 -5.448 1.00 23.80 O
ATOM 26 OP2 A B1912 -92.872 -3.558 -3.348 1.00 23.80 O
ATOM 27 O5' A B1912 -92.522 -1.247 -4.291 1.00 23.80 O
TER
Atoms:
C4: (-100.378,-3.941,-5.600)
N3: (-100.067,-2.604,-5.536)
OP1: (-108.063,-4.501,-7.885)
OP2: (-106.012,-5.673,-6.925)
C2: (-100.939,-1.553,-5.624)
C1': (-103.224,-0.772,-5.890)
C3': (-104.583,-0.831,-7.818)
O5': (-106.063,-3.167,-7.165)
O4': (-104.510,-1.221,-5.528)
C5': (-106.529,-1.944,-6.624)
P: (-106.908,-4.492,-6.962)
C4': (-105.443,-0.914,-6.584)
C2': (-103.318,-0.180,-7.298)
O2': (-103.486,1.227,-7.187)
N1: (-102.268,-1.909,-5.807)
O4: (-99.450,-4.734,-5.501)
O2: (-100.552,-0.397,-5.566)
C6: (-102.648,-3.242,-5.867)
C5: (-101.768,-4.251,-5.775)
O3': (-105.202,-0.108,-8.848)
N3: (-100.067,-2.604,-5.536)
OP1: (-108.063,-4.501,-7.885)
OP2: (-106.012,-5.673,-6.925)
C2: (-100.939,-1.553,-5.624)
C1': (-103.224,-0.772,-5.890)
C3': (-104.583,-0.831,-7.818)
O5': (-106.063,-3.167,-7.165)
O4': (-104.510,-1.221,-5.528)
C5': (-106.529,-1.944,-6.624)
P: (-106.908,-4.492,-6.962)
C4': (-105.443,-0.914,-6.584)
C2': (-103.318,-0.180,-7.298)
O2': (-103.486,1.227,-7.187)
N1: (-102.268,-1.909,-5.807)
O4: (-99.450,-4.734,-5.501)
O2: (-100.552,-0.397,-5.566)
C6: (-102.648,-3.242,-5.867)
C5: (-101.768,-4.251,-5.775)
O3': (-105.202,-0.108,-8.848)
OP1: (-93.796,-8.908,-6.325)
OP2: (-96.242,-8.926,-7.041)
C3': (-94.443,-4.204,-5.830)
C1': (-96.115,-3.650,-7.403)
C5': (-93.714,-6.074,-7.385)
O4': (-95.048,-4.223,-8.124)
C8: (-97.713,-5.286,-8.508)
O2': (-96.579,-3.244,-5.073)
C6: (-100.611,-3.431,-9.321)
C5: (-99.393,-4.041,-8.939)
C4: (-98.445,-3.254,-8.323)
P: (-94.870,-8.410,-7.211)
C4': (-93.982,-4.607,-7.217)
C2': (-95.959,-4.124,-5.973)
C2: (-99.753,-1.479,-8.463)
N1: (-100.761,-2.120,-9.070)
N3: (-98.572,-1.949,-8.055)
N6: (-101.636,-4.038,-9.923)
N7: (-98.908,-5.329,-9.053)
N9: (-97.369,-4.056,-8.037)
O5': (-94.897,-6.831,-7.176)
O3': (-93.916,-2.927,-5.511)
OP2: (-96.242,-8.926,-7.041)
C3': (-94.443,-4.204,-5.830)
C1': (-96.115,-3.650,-7.403)
C5': (-93.714,-6.074,-7.385)
O4': (-95.048,-4.223,-8.124)
C8: (-97.713,-5.286,-8.508)
O2': (-96.579,-3.244,-5.073)
C6: (-100.611,-3.431,-9.321)
C5: (-99.393,-4.041,-8.939)
C4: (-98.445,-3.254,-8.323)
P: (-94.870,-8.410,-7.211)
C4': (-93.982,-4.607,-7.217)
C2': (-95.959,-4.124,-5.973)
C2: (-99.753,-1.479,-8.463)
N1: (-100.761,-2.120,-9.070)
N3: (-98.572,-1.949,-8.055)
N6: (-101.636,-4.038,-9.923)
N7: (-98.908,-5.329,-9.053)
N9: (-97.369,-4.056,-8.037)
O5': (-94.897,-6.831,-7.176)
O3': (-93.916,-2.927,-5.511)
Image (generated by PyMOL):