Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12598:12597
Extra
PDB:
ATOM 1 O3' A A2597 -1.262 3.138 10.421 1.00 64.93 O
ATOM 2 P U A2598 -0.784 4.518 9.748 1.00 62.82 P
ATOM 3 OP1 U A2598 -1.883 5.474 9.946 1.00 63.09 O
ATOM 4 OP2 U A2598 -0.333 4.217 8.355 1.00 63.22 O
ATOM 5 O5' U A2598 0.458 4.956 10.647 1.00 62.21 O
ATOM 6 C5' U A2598 0.430 4.814 12.065 1.00 61.68 C
ATOM 7 C4' U A2598 1.809 4.924 12.674 1.00 61.15 C
ATOM 8 O4' U A2598 2.547 3.677 12.530 1.00 60.94 O
ATOM 9 C3' U A2598 2.743 5.936 12.046 1.00 61.25 C
ATOM 10 O3' U A2598 2.421 7.258 12.386 1.00 61.32 O
ATOM 11 C2' U A2598 4.088 5.479 12.588 1.00 60.71 C
ATOM 12 O2' U A2598 4.181 5.772 13.991 1.00 60.22 O
ATOM 13 C1' U A2598 3.943 3.968 12.431 1.00 60.68 C
ATOM 14 N1 U A2598 4.490 3.466 11.115 1.00 61.00 N
ATOM 15 C2 U A2598 3.602 3.110 10.127 1.00 61.54 C
ATOM 16 O2 U A2598 2.426 3.181 10.214 1.00 61.78 O
ATOM 17 N3 U A2598 4.031 2.646 8.940 1.00 61.86 N
ATOM 18 C4 U A2598 5.295 2.468 8.568 1.00 61.72 C
ATOM 19 O4 U A2598 5.393 2.021 7.412 1.00 62.12 O
ATOM 20 C5 U A2598 6.242 2.833 9.620 1.00 61.14 C
ATOM 21 C6 U A2598 5.829 3.301 10.827 1.00 60.81 C
ATOM 22 P A A2599 2.779 8.440 11.384 1.00 58.03 P
ATOM 23 OP1 A A2599 2.162 8.139 10.097 1.00 58.62 O
ATOM 24 OP2 A A2599 4.246 8.624 11.432 1.00 57.70 O
ATOM 25 O5' A A2599 2.048 9.659 12.062 1.00 58.08 O
TER
ATOM 1 O3' C B2596 -3.647 1.889 6.480 1.00 72.76 O
ATOM 2 P A B2597 -3.484 0.292 6.392 1.00 66.89 P
ATOM 3 OP1 A B2597 -2.982 -0.010 5.026 1.00 67.30 O
ATOM 4 OP2 A B2597 -4.785 -0.301 6.846 1.00 67.02 O
ATOM 5 O5' A B2597 -2.357 -0.032 7.472 1.00 66.15 O
ATOM 6 C5' A B2597 -1.557 0.997 8.011 1.00 65.80 C
ATOM 7 C4' A B2597 -1.480 0.910 9.506 1.00 65.19 C
ATOM 8 O4' A B2597 -0.918 -0.379 9.896 1.00 64.84 O
ATOM 9 C3' A B2597 -0.588 1.940 10.164 1.00 64.79 C
ATOM 10 O3' A B2597 -1.262 3.138 10.421 1.00 64.93 O
ATOM 11 C2' A B2597 -0.126 1.233 11.421 1.00 64.16 C
ATOM 12 O2' A B2597 -1.150 1.254 12.394 1.00 64.05 O
ATOM 13 C1' A B2597 0.043 -0.201 10.911 1.00 64.23 C
ATOM 14 N9 A B2597 1.385 -0.411 10.305 1.00 64.13 N
ATOM 15 C8 A B2597 1.634 -0.779 9.006 1.00 64.55 C
ATOM 16 N7 A B2597 2.898 -0.866 8.681 1.00 64.38 N
ATOM 17 C5 A B2597 3.541 -0.500 9.847 1.00 63.81 C
ATOM 18 C6 A B2597 4.907 -0.392 10.159 1.00 63.40 C
ATOM 19 N6 A B2597 5.889 -0.646 9.278 1.00 63.51 N
ATOM 20 N1 A B2597 5.230 -0.020 11.419 1.00 62.88 N
ATOM 21 C2 A B2597 4.258 0.228 12.303 1.00 62.78 C
ATOM 22 N3 A B2597 2.944 0.161 12.113 1.00 63.14 N
ATOM 23 C4 A B2597 2.636 -0.210 10.853 1.00 63.65 C
ATOM 24 P U B2598 -0.784 4.518 9.748 1.00 62.82 P
ATOM 25 OP1 U B2598 -1.883 5.474 9.946 1.00 63.09 O
ATOM 26 OP2 U B2598 -0.333 4.217 8.355 1.00 63.22 O
ATOM 27 O5' U B2598 0.458 4.956 10.647 1.00 62.21 O
TER
ATOM 2 P U A2598 -0.784 4.518 9.748 1.00 62.82 P
ATOM 3 OP1 U A2598 -1.883 5.474 9.946 1.00 63.09 O
ATOM 4 OP2 U A2598 -0.333 4.217 8.355 1.00 63.22 O
ATOM 5 O5' U A2598 0.458 4.956 10.647 1.00 62.21 O
ATOM 6 C5' U A2598 0.430 4.814 12.065 1.00 61.68 C
ATOM 7 C4' U A2598 1.809 4.924 12.674 1.00 61.15 C
ATOM 8 O4' U A2598 2.547 3.677 12.530 1.00 60.94 O
ATOM 9 C3' U A2598 2.743 5.936 12.046 1.00 61.25 C
ATOM 10 O3' U A2598 2.421 7.258 12.386 1.00 61.32 O
ATOM 11 C2' U A2598 4.088 5.479 12.588 1.00 60.71 C
ATOM 12 O2' U A2598 4.181 5.772 13.991 1.00 60.22 O
ATOM 13 C1' U A2598 3.943 3.968 12.431 1.00 60.68 C
ATOM 14 N1 U A2598 4.490 3.466 11.115 1.00 61.00 N
ATOM 15 C2 U A2598 3.602 3.110 10.127 1.00 61.54 C
ATOM 16 O2 U A2598 2.426 3.181 10.214 1.00 61.78 O
ATOM 17 N3 U A2598 4.031 2.646 8.940 1.00 61.86 N
ATOM 18 C4 U A2598 5.295 2.468 8.568 1.00 61.72 C
ATOM 19 O4 U A2598 5.393 2.021 7.412 1.00 62.12 O
ATOM 20 C5 U A2598 6.242 2.833 9.620 1.00 61.14 C
ATOM 21 C6 U A2598 5.829 3.301 10.827 1.00 60.81 C
ATOM 22 P A A2599 2.779 8.440 11.384 1.00 58.03 P
ATOM 23 OP1 A A2599 2.162 8.139 10.097 1.00 58.62 O
ATOM 24 OP2 A A2599 4.246 8.624 11.432 1.00 57.70 O
ATOM 25 O5' A A2599 2.048 9.659 12.062 1.00 58.08 O
TER
ATOM 1 O3' C B2596 -3.647 1.889 6.480 1.00 72.76 O
ATOM 2 P A B2597 -3.484 0.292 6.392 1.00 66.89 P
ATOM 3 OP1 A B2597 -2.982 -0.010 5.026 1.00 67.30 O
ATOM 4 OP2 A B2597 -4.785 -0.301 6.846 1.00 67.02 O
ATOM 5 O5' A B2597 -2.357 -0.032 7.472 1.00 66.15 O
ATOM 6 C5' A B2597 -1.557 0.997 8.011 1.00 65.80 C
ATOM 7 C4' A B2597 -1.480 0.910 9.506 1.00 65.19 C
ATOM 8 O4' A B2597 -0.918 -0.379 9.896 1.00 64.84 O
ATOM 9 C3' A B2597 -0.588 1.940 10.164 1.00 64.79 C
ATOM 10 O3' A B2597 -1.262 3.138 10.421 1.00 64.93 O
ATOM 11 C2' A B2597 -0.126 1.233 11.421 1.00 64.16 C
ATOM 12 O2' A B2597 -1.150 1.254 12.394 1.00 64.05 O
ATOM 13 C1' A B2597 0.043 -0.201 10.911 1.00 64.23 C
ATOM 14 N9 A B2597 1.385 -0.411 10.305 1.00 64.13 N
ATOM 15 C8 A B2597 1.634 -0.779 9.006 1.00 64.55 C
ATOM 16 N7 A B2597 2.898 -0.866 8.681 1.00 64.38 N
ATOM 17 C5 A B2597 3.541 -0.500 9.847 1.00 63.81 C
ATOM 18 C6 A B2597 4.907 -0.392 10.159 1.00 63.40 C
ATOM 19 N6 A B2597 5.889 -0.646 9.278 1.00 63.51 N
ATOM 20 N1 A B2597 5.230 -0.020 11.419 1.00 62.88 N
ATOM 21 C2 A B2597 4.258 0.228 12.303 1.00 62.78 C
ATOM 22 N3 A B2597 2.944 0.161 12.113 1.00 63.14 N
ATOM 23 C4 A B2597 2.636 -0.210 10.853 1.00 63.65 C
ATOM 24 P U B2598 -0.784 4.518 9.748 1.00 62.82 P
ATOM 25 OP1 U B2598 -1.883 5.474 9.946 1.00 63.09 O
ATOM 26 OP2 U B2598 -0.333 4.217 8.355 1.00 63.22 O
ATOM 27 O5' U B2598 0.458 4.956 10.647 1.00 62.21 O
TER
Atoms:
C4: (5.295,2.468,8.568)
N3: (4.031,2.646,8.940)
OP1: (-1.883,5.474,9.946)
OP2: (-0.333,4.217,8.355)
C2: (3.602,3.110,10.127)
C1': (3.943,3.968,12.431)
C3': (2.743,5.936,12.046)
O5': (0.458,4.956,10.647)
O4': (2.547,3.677,12.530)
C5': (0.430,4.814,12.065)
P: (-0.784,4.518,9.748)
C4': (1.809,4.924,12.674)
C2': (4.088,5.479,12.588)
O2': (4.181,5.772,13.991)
N1: (4.490,3.466,11.115)
O4: (5.393,2.021,7.412)
O2: (2.426,3.181,10.214)
C6: (5.829,3.301,10.827)
C5: (6.242,2.833,9.620)
O3': (2.421,7.258,12.386)
N3: (4.031,2.646,8.940)
OP1: (-1.883,5.474,9.946)
OP2: (-0.333,4.217,8.355)
C2: (3.602,3.110,10.127)
C1': (3.943,3.968,12.431)
C3': (2.743,5.936,12.046)
O5': (0.458,4.956,10.647)
O4': (2.547,3.677,12.530)
C5': (0.430,4.814,12.065)
P: (-0.784,4.518,9.748)
C4': (1.809,4.924,12.674)
C2': (4.088,5.479,12.588)
O2': (4.181,5.772,13.991)
N1: (4.490,3.466,11.115)
O4: (5.393,2.021,7.412)
O2: (2.426,3.181,10.214)
C6: (5.829,3.301,10.827)
C5: (6.242,2.833,9.620)
O3': (2.421,7.258,12.386)
OP1: (-2.982,-0.010,5.026)
OP2: (-4.785,-0.301,6.846)
C3': (-0.588,1.940,10.164)
C1': (0.043,-0.201,10.911)
C5': (-1.557,0.997,8.011)
O4': (-0.918,-0.379,9.896)
C8: (1.634,-0.779,9.006)
O2': (-1.150,1.254,12.394)
C6: (4.907,-0.392,10.159)
C5: (3.541,-0.500,9.847)
C4: (2.636,-0.210,10.853)
P: (-3.484,0.292,6.392)
C4': (-1.480,0.910,9.506)
C2': (-0.126,1.233,11.421)
C2: (4.258,0.228,12.303)
N1: (5.230,-0.020,11.419)
N3: (2.944,0.161,12.113)
N6: (5.889,-0.646,9.278)
N7: (2.898,-0.866,8.681)
N9: (1.385,-0.411,10.305)
O5': (-2.357,-0.032,7.472)
O3': (-1.262,3.138,10.421)
OP2: (-4.785,-0.301,6.846)
C3': (-0.588,1.940,10.164)
C1': (0.043,-0.201,10.911)
C5': (-1.557,0.997,8.011)
O4': (-0.918,-0.379,9.896)
C8: (1.634,-0.779,9.006)
O2': (-1.150,1.254,12.394)
C6: (4.907,-0.392,10.159)
C5: (3.541,-0.500,9.847)
C4: (2.636,-0.210,10.853)
P: (-3.484,0.292,6.392)
C4': (-1.480,0.910,9.506)
C2': (-0.126,1.233,11.421)
C2: (4.258,0.228,12.303)
N1: (5.230,-0.020,11.419)
N3: (2.944,0.161,12.113)
N6: (5.889,-0.646,9.278)
N7: (2.898,-0.866,8.681)
N9: (1.385,-0.411,10.305)
O5': (-2.357,-0.032,7.472)
O3': (-1.262,3.138,10.421)
Image (generated by PyMOL):