ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1Y39:D34:D4

Extra

PDB:
ATOM 1 O3' A A 33 127.027 89.696 1.129 1.00 59.90 O
ATOM 2 P A A 34 126.726 88.660 2.311 1.00 58.50 P
ATOM 3 OP1 A A 34 125.563 89.151 3.078 1.00 59.65 O
ATOM 4 OP2 A A 34 128.027 88.432 2.999 1.00 58.25 O
ATOM 5 O5' A A 34 126.239 87.345 1.556 1.00 57.94 O
ATOM 6 C5' A A 34 124.978 87.329 0.889 1.00 56.89 C
ATOM 7 C4' A A 34 124.796 86.036 0.134 1.00 56.60 C
ATOM 8 O4' A A 34 125.783 85.972 -0.915 1.00 56.81 O
ATOM 9 C3' A A 34 124.965 84.750 0.934 1.00 55.91 C
ATOM 10 O3' A A 34 123.698 84.368 1.467 1.00 55.36 O
ATOM 11 C2' A A 34 125.393 83.749 -0.132 1.00 56.11 C
ATOM 12 O2' A A 34 124.294 83.207 -0.824 1.00 58.00 O
ATOM 13 C1' A A 34 126.175 84.628 -1.108 1.00 56.21 C
ATOM 14 N9 A A 34 127.623 84.559 -0.966 1.00 55.99 N
ATOM 15 C8 A A 34 128.426 85.335 -0.171 1.00 56.34 C
ATOM 16 N7 A A 34 129.702 85.059 -0.279 1.00 56.17 N
ATOM 17 C5 A A 34 129.741 84.023 -1.202 1.00 55.67 C
ATOM 18 C6 A A 34 130.799 83.284 -1.747 1.00 54.48 C
ATOM 19 N6 A A 34 132.074 83.466 -1.413 1.00 53.12 N
ATOM 20 N1 A A 34 130.498 82.333 -2.656 1.00 55.57 N
ATOM 21 C2 A A 34 129.212 82.136 -2.980 1.00 55.22 C
ATOM 22 N3 A A 34 128.129 82.756 -2.529 1.00 55.85 N
ATOM 23 C4 A A 34 128.466 83.703 -1.632 1.00 56.11 C
ATOM 24 P A A 35 123.599 83.734 2.941 1.00 56.32 P
ATOM 25 OP1 A A 35 122.220 83.937 3.458 1.00 57.25 O
ATOM 26 OP2 A A 35 124.762 84.214 3.737 1.00 54.77 O
ATOM 27 O5' A A 35 123.755 82.177 2.688 1.00 55.98 O
TER

ATOM 1 O3' A B 3 134.223 79.440 -11.154 1.00 68.83 O
ATOM 2 P G B 4 134.183 78.213 -10.126 1.00 67.26 P
ATOM 3 OP1 G B 4 135.490 77.521 -10.209 1.00 67.57 O
ATOM 4 OP2 G B 4 132.923 77.443 -10.355 1.00 66.47 O
ATOM 5 O5' G B 4 134.093 78.934 -8.709 1.00 65.46 O
ATOM 6 C5' G B 4 133.311 78.385 -7.649 1.00 61.35 C
ATOM 7 C4' G B 4 132.781 79.495 -6.782 1.00 58.39 C
ATOM 8 O4' G B 4 131.860 80.303 -7.560 1.00 57.32 O
ATOM 9 C3' G B 4 131.967 79.061 -5.579 1.00 56.89 C
ATOM 10 O3' G B 4 132.823 78.780 -4.484 1.00 55.98 O
ATOM 11 C2' G B 4 131.144 80.306 -5.321 1.00 56.02 C
ATOM 12 O2' G B 4 131.946 81.335 -4.780 1.00 54.24 O
ATOM 13 C1' G B 4 130.768 80.688 -6.750 1.00 55.78 C
ATOM 14 N9 G B 4 129.585 79.983 -7.225 1.00 54.53 N
ATOM 15 C8 G B 4 129.491 79.117 -8.290 1.00 54.92 C
ATOM 16 N7 G B 4 128.279 78.661 -8.475 1.00 53.87 N
ATOM 17 C5 G B 4 127.533 79.265 -7.473 1.00 53.60 C
ATOM 18 C6 G B 4 126.151 79.177 -7.175 1.00 52.94 C
ATOM 19 O6 G B 4 125.268 78.549 -7.772 1.00 53.04 O
ATOM 20 N1 G B 4 125.821 79.938 -6.062 1.00 53.28 N
ATOM 21 C2 G B 4 126.697 80.711 -5.343 1.00 53.91 C
ATOM 22 N2 G B 4 126.185 81.381 -4.301 1.00 52.64 N
ATOM 23 N3 G B 4 127.983 80.820 -5.623 1.00 54.60 N
ATOM 24 C4 G B 4 128.330 80.073 -6.689 1.00 54.24 C
ATOM 25 P G B 5 132.681 77.384 -3.714 1.00 55.71 P
ATOM 26 OP1 G B 5 133.581 77.381 -2.530 1.00 55.74 O
ATOM 27 OP2 G B 5 132.802 76.306 -4.727 1.00 56.57 O
ATOM 28 O5' G B 5 131.162 77.389 -3.224 1.00 56.70 O
TER

Atoms:
OP1: (125.563,89.151,3.078)
OP2: (128.027,88.432,2.999)
C3': (124.965,84.750,0.934)
C1': (126.175,84.628,-1.108)
C5': (124.978,87.329,0.889)
O4': (125.783,85.972,-0.915)
C8: (128.426,85.335,-0.171)
O2': (124.294,83.207,-0.824)
C6: (130.799,83.284,-1.747)
C5: (129.741,84.023,-1.202)
C4: (128.466,83.703,-1.632)
P: (126.726,88.660,2.311)
C4': (124.796,86.036,0.134)
C2': (125.393,83.749,-0.132)
C2: (129.212,82.136,-2.980)
N1: (130.498,82.333,-2.656)
N3: (128.129,82.756,-2.529)
N6: (132.074,83.466,-1.413)
N7: (129.702,85.059,-0.279)
N9: (127.623,84.559,-0.966)
O5': (126.239,87.345,1.556)
O3': (123.698,84.368,1.467)
OP1: (135.490,77.521,-10.209)
OP2: (132.923,77.443,-10.355)
C3': (131.967,79.061,-5.579)
C1': (130.768,80.688,-6.750)
C5': (133.311,78.385,-7.649)
O6: (125.268,78.549,-7.772)
O4': (131.860,80.303,-7.560)
C8: (129.491,79.117,-8.290)
C2: (126.697,80.711,-5.343)
C6: (126.151,79.177,-7.175)
C5: (127.533,79.265,-7.473)
C4: (128.330,80.073,-6.689)
P: (134.183,78.213,-10.126)
C4': (132.781,79.495,-6.782)
C2': (131.144,80.306,-5.321)
O2': (131.946,81.335,-4.780)
N1: (125.821,79.938,-6.062)
N2: (126.185,81.381,-4.301)
N3: (127.983,80.820,-5.623)
N7: (128.279,78.661,-8.475)
N9: (129.585,79.983,-7.225)
O5': (134.093,78.934,-8.709)
O3': (132.823,78.780,-4.484)
Image (generated by PyMOL):
PyMOL image
show in jmol