Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1538:A1458
Extra
PDB:
ATOM 1 O3' A A1537 18.038 -40.674 -0.956 1.00 0.01 O
ATOM 2 P A A1538 18.122 -39.500 0.103 1.00 5.36 P
ATOM 3 OP1 A A1538 19.437 -38.844 -0.104 1.00 5.36 O
ATOM 4 OP2 A A1538 17.810 -40.079 1.440 1.00 5.36 O
ATOM 5 O5' A A1538 16.940 -38.534 -0.368 1.00 5.36 O
ATOM 6 C5' A A1538 17.005 -37.892 -1.636 1.00 5.36 C
ATOM 7 C4' A A1538 15.652 -37.764 -2.285 1.00 5.36 C
ATOM 8 O4' A A1538 15.066 -39.068 -2.487 1.00 5.36 O
ATOM 9 C3' A A1538 14.618 -36.991 -1.497 1.00 5.36 C
ATOM 10 O3' A A1538 14.747 -35.597 -1.673 1.00 5.36 O
ATOM 11 C2' A A1538 13.300 -37.548 -2.022 1.00 5.36 C
ATOM 12 O2' A A1538 12.882 -36.901 -3.221 1.00 5.36 O
ATOM 13 C1' A A1538 13.672 -38.998 -2.326 1.00 5.36 C
ATOM 14 N9 A A1538 13.279 -39.847 -1.208 1.00 5.12 N
ATOM 15 C8 A A1538 13.958 -40.187 -0.065 1.00 5.12 C
ATOM 16 N7 A A1538 13.223 -40.889 0.773 1.00 5.12 N
ATOM 17 C5 A A1538 11.991 -40.968 0.131 1.00 5.12 C
ATOM 18 C6 A A1538 10.789 -41.566 0.473 1.00 5.12 C
ATOM 19 N6 A A1538 10.649 -42.211 1.611 1.00 5.12 N
ATOM 20 N1 A A1538 9.755 -41.465 -0.378 1.00 5.12 N
ATOM 21 C2 A A1538 9.916 -40.791 -1.520 1.00 5.12 C
ATOM 22 N3 A A1538 10.998 -40.180 -1.967 1.00 5.12 N
ATOM 23 C4 A A1538 12.003 -40.316 -1.083 1.00 5.12 C
ATOM 24 P G A1539 15.266 -34.680 -0.489 1.00 1.87 P
ATOM 25 OP1 G A1539 15.641 -33.385 -1.093 1.00 1.87 O
ATOM 26 OP2 G A1539 16.280 -35.451 0.240 1.00 1.87 O
ATOM 27 O5' G A1539 13.971 -34.507 0.395 1.00 1.87 O
TER
ATOM 1 O3' G B1457 1.870 -44.894 -5.458 1.00 12.27 O
ATOM 2 P G B1458 1.549 -43.607 -4.547 1.00 7.74 P
ATOM 3 OP1 G B1458 0.613 -44.031 -3.478 1.00 7.74 O
ATOM 4 OP2 G B1458 1.134 -42.521 -5.466 1.00 7.74 O
ATOM 5 O5' G B1458 2.962 -43.273 -3.913 1.00 7.74 O
ATOM 6 C5' G B1458 3.535 -44.116 -2.938 1.00 7.74 C
ATOM 7 C4' G B1458 4.778 -43.500 -2.360 1.00 7.74 C
ATOM 8 O4' G B1458 5.800 -43.428 -3.384 1.00 7.74 O
ATOM 9 C3' G B1458 4.632 -42.068 -1.869 1.00 7.74 C
ATOM 10 O3' G B1458 4.152 -41.998 -0.551 1.00 7.74 O
ATOM 11 C2' G B1458 6.027 -41.508 -2.015 1.00 7.74 C
ATOM 12 O2' G B1458 6.831 -41.938 -0.933 1.00 7.74 O
ATOM 13 C1' G B1458 6.504 -42.210 -3.281 1.00 7.74 C
ATOM 14 N9 G B1458 6.253 -41.419 -4.502 1.00 7.72 N
ATOM 15 C8 G B1458 5.164 -41.400 -5.319 1.00 7.72 C
ATOM 16 N7 G B1458 5.320 -40.607 -6.348 1.00 7.72 N
ATOM 17 C5 G B1458 6.590 -40.079 -6.213 1.00 7.72 C
ATOM 18 C6 G B1458 7.351 -39.146 -6.992 1.00 7.72 C
ATOM 19 O6 G B1458 7.070 -38.544 -8.025 1.00 7.72 O
ATOM 20 N1 G B1458 8.603 -38.889 -6.471 1.00 7.72 N
ATOM 21 C2 G B1458 9.089 -39.459 -5.331 1.00 7.72 C
ATOM 22 N2 G B1458 10.329 -39.105 -4.984 1.00 7.72 N
ATOM 23 N3 G B1458 8.404 -40.314 -4.577 1.00 7.72 N
ATOM 24 C4 G B1458 7.169 -40.581 -5.074 1.00 7.72 C
ATOM 25 P U B1459 3.713 -40.590 0.052 1.00 7.32 P
ATOM 26 OP1 U B1459 3.571 -40.762 1.522 1.00 7.32 O
ATOM 27 OP2 U B1459 2.546 -40.135 -0.736 1.00 7.32 O
ATOM 28 O5' U B1459 4.969 -39.676 -0.267 1.00 7.32 O
TER
ATOM 2 P A A1538 18.122 -39.500 0.103 1.00 5.36 P
ATOM 3 OP1 A A1538 19.437 -38.844 -0.104 1.00 5.36 O
ATOM 4 OP2 A A1538 17.810 -40.079 1.440 1.00 5.36 O
ATOM 5 O5' A A1538 16.940 -38.534 -0.368 1.00 5.36 O
ATOM 6 C5' A A1538 17.005 -37.892 -1.636 1.00 5.36 C
ATOM 7 C4' A A1538 15.652 -37.764 -2.285 1.00 5.36 C
ATOM 8 O4' A A1538 15.066 -39.068 -2.487 1.00 5.36 O
ATOM 9 C3' A A1538 14.618 -36.991 -1.497 1.00 5.36 C
ATOM 10 O3' A A1538 14.747 -35.597 -1.673 1.00 5.36 O
ATOM 11 C2' A A1538 13.300 -37.548 -2.022 1.00 5.36 C
ATOM 12 O2' A A1538 12.882 -36.901 -3.221 1.00 5.36 O
ATOM 13 C1' A A1538 13.672 -38.998 -2.326 1.00 5.36 C
ATOM 14 N9 A A1538 13.279 -39.847 -1.208 1.00 5.12 N
ATOM 15 C8 A A1538 13.958 -40.187 -0.065 1.00 5.12 C
ATOM 16 N7 A A1538 13.223 -40.889 0.773 1.00 5.12 N
ATOM 17 C5 A A1538 11.991 -40.968 0.131 1.00 5.12 C
ATOM 18 C6 A A1538 10.789 -41.566 0.473 1.00 5.12 C
ATOM 19 N6 A A1538 10.649 -42.211 1.611 1.00 5.12 N
ATOM 20 N1 A A1538 9.755 -41.465 -0.378 1.00 5.12 N
ATOM 21 C2 A A1538 9.916 -40.791 -1.520 1.00 5.12 C
ATOM 22 N3 A A1538 10.998 -40.180 -1.967 1.00 5.12 N
ATOM 23 C4 A A1538 12.003 -40.316 -1.083 1.00 5.12 C
ATOM 24 P G A1539 15.266 -34.680 -0.489 1.00 1.87 P
ATOM 25 OP1 G A1539 15.641 -33.385 -1.093 1.00 1.87 O
ATOM 26 OP2 G A1539 16.280 -35.451 0.240 1.00 1.87 O
ATOM 27 O5' G A1539 13.971 -34.507 0.395 1.00 1.87 O
TER
ATOM 1 O3' G B1457 1.870 -44.894 -5.458 1.00 12.27 O
ATOM 2 P G B1458 1.549 -43.607 -4.547 1.00 7.74 P
ATOM 3 OP1 G B1458 0.613 -44.031 -3.478 1.00 7.74 O
ATOM 4 OP2 G B1458 1.134 -42.521 -5.466 1.00 7.74 O
ATOM 5 O5' G B1458 2.962 -43.273 -3.913 1.00 7.74 O
ATOM 6 C5' G B1458 3.535 -44.116 -2.938 1.00 7.74 C
ATOM 7 C4' G B1458 4.778 -43.500 -2.360 1.00 7.74 C
ATOM 8 O4' G B1458 5.800 -43.428 -3.384 1.00 7.74 O
ATOM 9 C3' G B1458 4.632 -42.068 -1.869 1.00 7.74 C
ATOM 10 O3' G B1458 4.152 -41.998 -0.551 1.00 7.74 O
ATOM 11 C2' G B1458 6.027 -41.508 -2.015 1.00 7.74 C
ATOM 12 O2' G B1458 6.831 -41.938 -0.933 1.00 7.74 O
ATOM 13 C1' G B1458 6.504 -42.210 -3.281 1.00 7.74 C
ATOM 14 N9 G B1458 6.253 -41.419 -4.502 1.00 7.72 N
ATOM 15 C8 G B1458 5.164 -41.400 -5.319 1.00 7.72 C
ATOM 16 N7 G B1458 5.320 -40.607 -6.348 1.00 7.72 N
ATOM 17 C5 G B1458 6.590 -40.079 -6.213 1.00 7.72 C
ATOM 18 C6 G B1458 7.351 -39.146 -6.992 1.00 7.72 C
ATOM 19 O6 G B1458 7.070 -38.544 -8.025 1.00 7.72 O
ATOM 20 N1 G B1458 8.603 -38.889 -6.471 1.00 7.72 N
ATOM 21 C2 G B1458 9.089 -39.459 -5.331 1.00 7.72 C
ATOM 22 N2 G B1458 10.329 -39.105 -4.984 1.00 7.72 N
ATOM 23 N3 G B1458 8.404 -40.314 -4.577 1.00 7.72 N
ATOM 24 C4 G B1458 7.169 -40.581 -5.074 1.00 7.72 C
ATOM 25 P U B1459 3.713 -40.590 0.052 1.00 7.32 P
ATOM 26 OP1 U B1459 3.571 -40.762 1.522 1.00 7.32 O
ATOM 27 OP2 U B1459 2.546 -40.135 -0.736 1.00 7.32 O
ATOM 28 O5' U B1459 4.969 -39.676 -0.267 1.00 7.32 O
TER
Atoms:
OP1: (19.437,-38.844,-0.104)
OP2: (17.810,-40.079,1.440)
C3': (14.618,-36.991,-1.497)
C1': (13.672,-38.998,-2.326)
C5': (17.005,-37.892,-1.636)
O4': (15.066,-39.068,-2.487)
C8: (13.958,-40.187,-0.065)
O2': (12.882,-36.901,-3.221)
C6: (10.789,-41.566,0.473)
C5: (11.991,-40.968,0.131)
C4: (12.003,-40.316,-1.083)
P: (18.122,-39.500,0.103)
C4': (15.652,-37.764,-2.285)
C2': (13.300,-37.548,-2.022)
C2: (9.916,-40.791,-1.520)
N1: (9.755,-41.465,-0.378)
N3: (10.998,-40.180,-1.967)
N6: (10.649,-42.211,1.611)
N7: (13.223,-40.889,0.773)
N9: (13.279,-39.847,-1.208)
O5': (16.940,-38.534,-0.368)
O3': (14.747,-35.597,-1.673)
OP2: (17.810,-40.079,1.440)
C3': (14.618,-36.991,-1.497)
C1': (13.672,-38.998,-2.326)
C5': (17.005,-37.892,-1.636)
O4': (15.066,-39.068,-2.487)
C8: (13.958,-40.187,-0.065)
O2': (12.882,-36.901,-3.221)
C6: (10.789,-41.566,0.473)
C5: (11.991,-40.968,0.131)
C4: (12.003,-40.316,-1.083)
P: (18.122,-39.500,0.103)
C4': (15.652,-37.764,-2.285)
C2': (13.300,-37.548,-2.022)
C2: (9.916,-40.791,-1.520)
N1: (9.755,-41.465,-0.378)
N3: (10.998,-40.180,-1.967)
N6: (10.649,-42.211,1.611)
N7: (13.223,-40.889,0.773)
N9: (13.279,-39.847,-1.208)
O5': (16.940,-38.534,-0.368)
O3': (14.747,-35.597,-1.673)
OP1: (0.613,-44.031,-3.478)
OP2: (1.134,-42.521,-5.466)
C3': (4.632,-42.068,-1.869)
C1': (6.504,-42.210,-3.281)
C5': (3.535,-44.116,-2.938)
O6: (7.070,-38.544,-8.025)
O4': (5.800,-43.428,-3.384)
C8: (5.164,-41.400,-5.319)
C2: (9.089,-39.459,-5.331)
C6: (7.351,-39.146,-6.992)
C5: (6.590,-40.079,-6.213)
C4: (7.169,-40.581,-5.074)
P: (1.549,-43.607,-4.547)
C4': (4.778,-43.500,-2.360)
C2': (6.027,-41.508,-2.015)
O2': (6.831,-41.938,-0.933)
N1: (8.603,-38.889,-6.471)
N2: (10.329,-39.105,-4.984)
N3: (8.404,-40.314,-4.577)
N7: (5.320,-40.607,-6.348)
N9: (6.253,-41.419,-4.502)
O5': (2.962,-43.273,-3.913)
O3': (4.152,-41.998,-0.551)
OP2: (1.134,-42.521,-5.466)
C3': (4.632,-42.068,-1.869)
C1': (6.504,-42.210,-3.281)
C5': (3.535,-44.116,-2.938)
O6: (7.070,-38.544,-8.025)
O4': (5.800,-43.428,-3.384)
C8: (5.164,-41.400,-5.319)
C2: (9.089,-39.459,-5.331)
C6: (7.351,-39.146,-6.992)
C5: (6.590,-40.079,-6.213)
C4: (7.169,-40.581,-5.074)
P: (1.549,-43.607,-4.547)
C4': (4.778,-43.500,-2.360)
C2': (6.027,-41.508,-2.015)
O2': (6.831,-41.938,-0.933)
N1: (8.603,-38.889,-6.471)
N2: (10.329,-39.105,-4.984)
N3: (8.404,-40.314,-4.577)
N7: (5.320,-40.607,-6.348)
N9: (6.253,-41.419,-4.502)
O5': (2.962,-43.273,-3.913)
O3': (4.152,-41.998,-0.551)
Image (generated by PyMOL):