Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X61:X11
Extra
PDB:
ATOM 1 O3' A A 60 -14.506 -18.708 14.775 1.00 28.19 O
ATOM 2 P U A 61 -15.884 -19.172 14.104 1.00 29.87 P
ATOM 3 OP1 U A 61 -16.964 -18.861 15.070 1.00 29.03 O
ATOM 4 OP2 U A 61 -15.745 -20.556 13.595 1.00 30.07 O
ATOM 5 O5' U A 61 -16.018 -18.172 12.862 1.00 29.24 O
ATOM 6 C5' U A 61 -16.260 -16.791 13.110 1.00 30.03 C
ATOM 7 C4' U A 61 -15.965 -15.955 11.878 1.00 31.16 C
ATOM 8 O4' U A 61 -14.591 -16.137 11.463 1.00 31.31 O
ATOM 9 C3' U A 61 -16.770 -16.326 10.644 1.00 31.97 C
ATOM 10 O3' U A 61 -18.057 -15.736 10.753 1.00 32.25 O
ATOM 11 C2' U A 61 -15.911 -15.696 9.547 1.00 31.77 C
ATOM 12 O2' U A 61 -16.122 -14.306 9.386 1.00 33.42 O
ATOM 13 C1' U A 61 -14.497 -15.961 10.063 1.00 31.57 C
ATOM 14 N1 U A 61 -13.875 -17.172 9.452 1.00 31.24 N
ATOM 15 C2 U A 61 -13.020 -17.017 8.378 1.00 31.52 C
ATOM 16 O2 U A 61 -12.722 -15.934 7.907 1.00 33.96 O
ATOM 17 N3 U A 61 -12.514 -18.186 7.870 1.00 30.79 N
ATOM 18 C4 U A 61 -12.766 -19.468 8.320 1.00 31.09 C
ATOM 19 O4 U A 61 -12.234 -20.418 7.757 1.00 33.56 O
ATOM 20 C5 U A 61 -13.668 -19.553 9.440 1.00 31.01 C
ATOM 21 C6 U A 61 -14.179 -18.426 9.951 1.00 30.69 C
ATOM 22 P G A 62 -19.327 -16.286 9.955 1.00 31.76 P
ATOM 23 OP1 G A 62 -20.480 -15.470 10.397 1.00 32.26 O
ATOM 24 OP2 G A 62 -19.382 -17.759 10.068 1.00 32.19 O
ATOM 25 O5' G A 62 -18.979 -15.914 8.441 1.00 32.08 O
TER
ATOM 1 O3' U B 10 -13.291 -5.004 6.185 1.00 35.47 O
ATOM 2 P G B 11 -14.012 -4.286 7.420 1.00 38.23 P
ATOM 3 OP1 G B 11 -15.038 -3.347 6.910 1.00 37.68 O
ATOM 4 OP2 G B 11 -12.942 -3.799 8.316 1.00 38.02 O
ATOM 5 O5' G B 11 -14.758 -5.514 8.131 1.00 36.73 O
ATOM 6 C5' G B 11 -13.990 -6.525 8.755 1.00 34.39 C
ATOM 7 C4' G B 11 -14.634 -7.890 8.601 1.00 33.59 C
ATOM 8 O4' G B 11 -14.433 -8.375 7.248 1.00 33.51 O
ATOM 9 C3' G B 11 -14.028 -8.949 9.510 1.00 32.84 C
ATOM 10 O3' G B 11 -14.753 -9.019 10.730 1.00 34.54 O
ATOM 11 C2' G B 11 -14.168 -10.225 8.691 1.00 33.12 C
ATOM 12 O2' G B 11 -15.468 -10.769 8.787 1.00 34.15 O
ATOM 13 C1' G B 11 -13.934 -9.703 7.278 1.00 32.36 C
ATOM 14 N9 G B 11 -12.541 -9.684 6.831 1.00 31.65 N
ATOM 15 C8 G B 11 -11.800 -8.557 6.566 1.00 30.67 C
ATOM 16 N7 G B 11 -10.592 -8.812 6.160 1.00 30.93 N
ATOM 17 C5 G B 11 -10.520 -10.197 6.146 1.00 30.79 C
ATOM 18 C6 G B 11 -9.442 -11.041 5.781 1.00 30.81 C
ATOM 19 O6 G B 11 -8.308 -10.723 5.391 1.00 30.36 O
ATOM 20 N1 G B 11 -9.780 -12.385 5.902 1.00 30.16 N
ATOM 21 C2 G B 11 -11.001 -12.854 6.324 1.00 30.63 C
ATOM 22 N2 G B 11 -11.120 -14.187 6.371 1.00 29.35 N
ATOM 23 N3 G B 11 -12.026 -12.075 6.662 1.00 32.60 N
ATOM 24 C4 G B 11 -11.714 -10.755 6.551 1.00 31.04 C
ATOM 25 P C B 12 -13.944 -9.133 12.106 1.00 32.77 P
ATOM 26 OP1 C B 12 -14.909 -9.093 13.219 1.00 33.46 O
ATOM 27 OP2 C B 12 -12.820 -8.174 12.045 1.00 33.88 O
ATOM 28 O5' C B 12 -13.306 -10.597 12.009 1.00 32.32 O
TER
ATOM 2 P U A 61 -15.884 -19.172 14.104 1.00 29.87 P
ATOM 3 OP1 U A 61 -16.964 -18.861 15.070 1.00 29.03 O
ATOM 4 OP2 U A 61 -15.745 -20.556 13.595 1.00 30.07 O
ATOM 5 O5' U A 61 -16.018 -18.172 12.862 1.00 29.24 O
ATOM 6 C5' U A 61 -16.260 -16.791 13.110 1.00 30.03 C
ATOM 7 C4' U A 61 -15.965 -15.955 11.878 1.00 31.16 C
ATOM 8 O4' U A 61 -14.591 -16.137 11.463 1.00 31.31 O
ATOM 9 C3' U A 61 -16.770 -16.326 10.644 1.00 31.97 C
ATOM 10 O3' U A 61 -18.057 -15.736 10.753 1.00 32.25 O
ATOM 11 C2' U A 61 -15.911 -15.696 9.547 1.00 31.77 C
ATOM 12 O2' U A 61 -16.122 -14.306 9.386 1.00 33.42 O
ATOM 13 C1' U A 61 -14.497 -15.961 10.063 1.00 31.57 C
ATOM 14 N1 U A 61 -13.875 -17.172 9.452 1.00 31.24 N
ATOM 15 C2 U A 61 -13.020 -17.017 8.378 1.00 31.52 C
ATOM 16 O2 U A 61 -12.722 -15.934 7.907 1.00 33.96 O
ATOM 17 N3 U A 61 -12.514 -18.186 7.870 1.00 30.79 N
ATOM 18 C4 U A 61 -12.766 -19.468 8.320 1.00 31.09 C
ATOM 19 O4 U A 61 -12.234 -20.418 7.757 1.00 33.56 O
ATOM 20 C5 U A 61 -13.668 -19.553 9.440 1.00 31.01 C
ATOM 21 C6 U A 61 -14.179 -18.426 9.951 1.00 30.69 C
ATOM 22 P G A 62 -19.327 -16.286 9.955 1.00 31.76 P
ATOM 23 OP1 G A 62 -20.480 -15.470 10.397 1.00 32.26 O
ATOM 24 OP2 G A 62 -19.382 -17.759 10.068 1.00 32.19 O
ATOM 25 O5' G A 62 -18.979 -15.914 8.441 1.00 32.08 O
TER
ATOM 1 O3' U B 10 -13.291 -5.004 6.185 1.00 35.47 O
ATOM 2 P G B 11 -14.012 -4.286 7.420 1.00 38.23 P
ATOM 3 OP1 G B 11 -15.038 -3.347 6.910 1.00 37.68 O
ATOM 4 OP2 G B 11 -12.942 -3.799 8.316 1.00 38.02 O
ATOM 5 O5' G B 11 -14.758 -5.514 8.131 1.00 36.73 O
ATOM 6 C5' G B 11 -13.990 -6.525 8.755 1.00 34.39 C
ATOM 7 C4' G B 11 -14.634 -7.890 8.601 1.00 33.59 C
ATOM 8 O4' G B 11 -14.433 -8.375 7.248 1.00 33.51 O
ATOM 9 C3' G B 11 -14.028 -8.949 9.510 1.00 32.84 C
ATOM 10 O3' G B 11 -14.753 -9.019 10.730 1.00 34.54 O
ATOM 11 C2' G B 11 -14.168 -10.225 8.691 1.00 33.12 C
ATOM 12 O2' G B 11 -15.468 -10.769 8.787 1.00 34.15 O
ATOM 13 C1' G B 11 -13.934 -9.703 7.278 1.00 32.36 C
ATOM 14 N9 G B 11 -12.541 -9.684 6.831 1.00 31.65 N
ATOM 15 C8 G B 11 -11.800 -8.557 6.566 1.00 30.67 C
ATOM 16 N7 G B 11 -10.592 -8.812 6.160 1.00 30.93 N
ATOM 17 C5 G B 11 -10.520 -10.197 6.146 1.00 30.79 C
ATOM 18 C6 G B 11 -9.442 -11.041 5.781 1.00 30.81 C
ATOM 19 O6 G B 11 -8.308 -10.723 5.391 1.00 30.36 O
ATOM 20 N1 G B 11 -9.780 -12.385 5.902 1.00 30.16 N
ATOM 21 C2 G B 11 -11.001 -12.854 6.324 1.00 30.63 C
ATOM 22 N2 G B 11 -11.120 -14.187 6.371 1.00 29.35 N
ATOM 23 N3 G B 11 -12.026 -12.075 6.662 1.00 32.60 N
ATOM 24 C4 G B 11 -11.714 -10.755 6.551 1.00 31.04 C
ATOM 25 P C B 12 -13.944 -9.133 12.106 1.00 32.77 P
ATOM 26 OP1 C B 12 -14.909 -9.093 13.219 1.00 33.46 O
ATOM 27 OP2 C B 12 -12.820 -8.174 12.045 1.00 33.88 O
ATOM 28 O5' C B 12 -13.306 -10.597 12.009 1.00 32.32 O
TER
Atoms:
C4: (-12.766,-19.468,8.320)
N3: (-12.514,-18.186,7.870)
OP1: (-16.964,-18.861,15.070)
OP2: (-15.745,-20.556,13.595)
C2: (-13.020,-17.017,8.378)
C1': (-14.497,-15.961,10.063)
C3': (-16.770,-16.326,10.644)
O5': (-16.018,-18.172,12.862)
O4': (-14.591,-16.137,11.463)
C5': (-16.260,-16.791,13.110)
P: (-15.884,-19.172,14.104)
C4': (-15.965,-15.955,11.878)
C2': (-15.911,-15.696,9.547)
O2': (-16.122,-14.306,9.386)
N1: (-13.875,-17.172,9.452)
O4: (-12.234,-20.418,7.757)
O2: (-12.722,-15.934,7.907)
C6: (-14.179,-18.426,9.951)
C5: (-13.668,-19.553,9.440)
O3': (-18.057,-15.736,10.753)
N3: (-12.514,-18.186,7.870)
OP1: (-16.964,-18.861,15.070)
OP2: (-15.745,-20.556,13.595)
C2: (-13.020,-17.017,8.378)
C1': (-14.497,-15.961,10.063)
C3': (-16.770,-16.326,10.644)
O5': (-16.018,-18.172,12.862)
O4': (-14.591,-16.137,11.463)
C5': (-16.260,-16.791,13.110)
P: (-15.884,-19.172,14.104)
C4': (-15.965,-15.955,11.878)
C2': (-15.911,-15.696,9.547)
O2': (-16.122,-14.306,9.386)
N1: (-13.875,-17.172,9.452)
O4: (-12.234,-20.418,7.757)
O2: (-12.722,-15.934,7.907)
C6: (-14.179,-18.426,9.951)
C5: (-13.668,-19.553,9.440)
O3': (-18.057,-15.736,10.753)
OP1: (-15.038,-3.347,6.910)
OP2: (-12.942,-3.799,8.316)
C3': (-14.028,-8.949,9.510)
C1': (-13.934,-9.703,7.278)
C5': (-13.990,-6.525,8.755)
O6: (-8.308,-10.723,5.391)
O4': (-14.433,-8.375,7.248)
C8: (-11.800,-8.557,6.566)
C2: (-11.001,-12.854,6.324)
C6: (-9.442,-11.041,5.781)
C5: (-10.520,-10.197,6.146)
C4: (-11.714,-10.755,6.551)
P: (-14.012,-4.286,7.420)
C4': (-14.634,-7.890,8.601)
C2': (-14.168,-10.225,8.691)
O2': (-15.468,-10.769,8.787)
N1: (-9.780,-12.385,5.902)
N2: (-11.120,-14.187,6.371)
N3: (-12.026,-12.075,6.662)
N7: (-10.592,-8.812,6.160)
N9: (-12.541,-9.684,6.831)
O5': (-14.758,-5.514,8.131)
O3': (-14.753,-9.019,10.730)
OP2: (-12.942,-3.799,8.316)
C3': (-14.028,-8.949,9.510)
C1': (-13.934,-9.703,7.278)
C5': (-13.990,-6.525,8.755)
O6: (-8.308,-10.723,5.391)
O4': (-14.433,-8.375,7.248)
C8: (-11.800,-8.557,6.566)
C2: (-11.001,-12.854,6.324)
C6: (-9.442,-11.041,5.781)
C5: (-10.520,-10.197,6.146)
C4: (-11.714,-10.755,6.551)
P: (-14.012,-4.286,7.420)
C4': (-14.634,-7.890,8.601)
C2': (-14.168,-10.225,8.691)
O2': (-15.468,-10.769,8.787)
N1: (-9.780,-12.385,5.902)
N2: (-11.120,-14.187,6.371)
N3: (-12.026,-12.075,6.662)
N7: (-10.592,-8.812,6.160)
N9: (-12.541,-9.684,6.831)
O5': (-14.758,-5.514,8.131)
O3': (-14.753,-9.019,10.730)
Image (generated by PyMOL):