Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:059:044
Extra
PDB:
ATOM 1 O3' U A 58 56.499 164.419 27.109 1.00 54.49 O
ATOM 2 P A A 59 55.697 164.799 28.443 1.00 55.61 P
ATOM 3 OP1 A A 59 54.407 165.405 28.042 1.00 58.84 O
ATOM 4 OP2 A A 59 56.606 165.561 29.338 1.00 54.06 O
ATOM 5 O5' A A 59 55.345 163.381 29.074 1.00 55.75 O
ATOM 6 C5' A A 59 56.369 162.413 29.258 1.00 55.94 C
ATOM 7 C4' A A 59 55.950 161.347 30.239 1.00 56.20 C
ATOM 8 O4' A A 59 57.203 160.778 30.713 1.00 56.65 O
ATOM 9 C3' A A 59 55.192 161.792 31.499 1.00 55.56 C
ATOM 10 O3' A A 59 53.787 161.491 31.404 1.00 56.45 O
ATOM 11 C2' A A 59 55.851 160.963 32.587 1.00 56.45 C
ATOM 12 O2' A A 59 55.338 159.646 32.562 1.00 56.12 O
ATOM 13 C1' A A 59 57.302 160.958 32.107 1.00 57.57 C
ATOM 14 N9 A A 59 58.035 162.208 32.363 1.00 59.27 N
ATOM 15 C8 A A 59 57.896 163.423 31.731 1.00 57.69 C
ATOM 16 N7 A A 59 58.697 164.354 32.188 1.00 58.57 N
ATOM 17 C5 A A 59 59.414 163.716 33.192 1.00 59.49 C
ATOM 18 C6 A A 59 60.426 164.161 34.066 1.00 58.96 C
ATOM 19 N6 A A 59 60.908 165.403 34.077 1.00 59.01 N
ATOM 20 N1 A A 59 60.932 163.272 34.942 1.00 59.52 N
ATOM 21 C2 A A 59 60.454 162.028 34.940 1.00 59.89 C
ATOM 22 N3 A A 59 59.511 161.489 34.175 1.00 60.66 N
ATOM 23 C4 A A 59 59.022 162.395 33.309 1.00 60.20 C
ATOM 24 P A A 60 52.806 161.685 32.684 1.00 55.16 P
ATOM 25 OP1 A A 60 52.094 162.977 32.559 1.00 55.36 O
ATOM 26 OP2 A A 60 53.549 161.390 33.923 1.00 57.10 O
ATOM 27 O5' A A 60 51.729 160.523 32.518 1.00 55.67 O
TER
ATOM 1 O3' C B 43 64.331 161.076 44.079 1.00 55.88 O
ATOM 2 P G B 44 62.918 161.843 44.081 1.00 56.77 P
ATOM 3 OP1 G B 44 62.927 162.825 45.193 1.00 55.74 O
ATOM 4 OP2 G B 44 61.838 160.813 44.016 1.00 56.89 O
ATOM 5 O5' G B 44 62.957 162.650 42.709 1.00 56.50 O
ATOM 6 C5' G B 44 61.753 163.066 42.047 1.00 57.58 C
ATOM 7 C4' G B 44 61.988 163.145 40.555 1.00 58.78 C
ATOM 8 O4' G B 44 62.476 161.869 40.067 1.00 58.86 O
ATOM 9 C3' G B 44 60.760 163.469 39.717 1.00 59.81 C
ATOM 10 O3' G B 44 60.633 164.871 39.537 1.00 59.50 O
ATOM 11 C2' G B 44 61.057 162.764 38.404 1.00 61.15 C
ATOM 12 O2' G B 44 61.965 163.509 37.614 1.00 64.71 O
ATOM 13 C1' G B 44 61.755 161.497 38.904 1.00 60.99 C
ATOM 14 N9 G B 44 60.854 160.408 39.271 1.00 59.99 N
ATOM 15 C8 G B 44 60.753 159.823 40.506 1.00 60.09 C
ATOM 16 N7 G B 44 59.891 158.849 40.542 1.00 62.10 N
ATOM 17 C5 G B 44 59.384 158.788 39.254 1.00 60.32 C
ATOM 18 C6 G B 44 58.415 157.914 38.688 1.00 60.73 C
ATOM 19 O6 G B 44 57.796 156.984 39.232 1.00 58.86 O
ATOM 20 N1 G B 44 58.193 158.203 37.349 1.00 60.00 N
ATOM 21 C2 G B 44 58.820 159.193 36.644 1.00 59.25 C
ATOM 22 N2 G B 44 58.465 159.303 35.366 1.00 58.30 N
ATOM 23 N3 G B 44 59.725 160.012 37.155 1.00 60.10 N
ATOM 24 C4 G B 44 59.958 159.752 38.457 1.00 60.12 C
ATOM 25 P U B 45 59.225 165.579 39.800 1.00 60.85 P
ATOM 26 OP1 U B 45 59.400 167.041 39.635 1.00 61.76 O
ATOM 27 OP2 U B 45 58.655 165.047 41.062 1.00 63.36 O
ATOM 28 O5' U B 45 58.306 165.042 38.628 1.00 61.10 O
TER
ATOM 2 P A A 59 55.697 164.799 28.443 1.00 55.61 P
ATOM 3 OP1 A A 59 54.407 165.405 28.042 1.00 58.84 O
ATOM 4 OP2 A A 59 56.606 165.561 29.338 1.00 54.06 O
ATOM 5 O5' A A 59 55.345 163.381 29.074 1.00 55.75 O
ATOM 6 C5' A A 59 56.369 162.413 29.258 1.00 55.94 C
ATOM 7 C4' A A 59 55.950 161.347 30.239 1.00 56.20 C
ATOM 8 O4' A A 59 57.203 160.778 30.713 1.00 56.65 O
ATOM 9 C3' A A 59 55.192 161.792 31.499 1.00 55.56 C
ATOM 10 O3' A A 59 53.787 161.491 31.404 1.00 56.45 O
ATOM 11 C2' A A 59 55.851 160.963 32.587 1.00 56.45 C
ATOM 12 O2' A A 59 55.338 159.646 32.562 1.00 56.12 O
ATOM 13 C1' A A 59 57.302 160.958 32.107 1.00 57.57 C
ATOM 14 N9 A A 59 58.035 162.208 32.363 1.00 59.27 N
ATOM 15 C8 A A 59 57.896 163.423 31.731 1.00 57.69 C
ATOM 16 N7 A A 59 58.697 164.354 32.188 1.00 58.57 N
ATOM 17 C5 A A 59 59.414 163.716 33.192 1.00 59.49 C
ATOM 18 C6 A A 59 60.426 164.161 34.066 1.00 58.96 C
ATOM 19 N6 A A 59 60.908 165.403 34.077 1.00 59.01 N
ATOM 20 N1 A A 59 60.932 163.272 34.942 1.00 59.52 N
ATOM 21 C2 A A 59 60.454 162.028 34.940 1.00 59.89 C
ATOM 22 N3 A A 59 59.511 161.489 34.175 1.00 60.66 N
ATOM 23 C4 A A 59 59.022 162.395 33.309 1.00 60.20 C
ATOM 24 P A A 60 52.806 161.685 32.684 1.00 55.16 P
ATOM 25 OP1 A A 60 52.094 162.977 32.559 1.00 55.36 O
ATOM 26 OP2 A A 60 53.549 161.390 33.923 1.00 57.10 O
ATOM 27 O5' A A 60 51.729 160.523 32.518 1.00 55.67 O
TER
ATOM 1 O3' C B 43 64.331 161.076 44.079 1.00 55.88 O
ATOM 2 P G B 44 62.918 161.843 44.081 1.00 56.77 P
ATOM 3 OP1 G B 44 62.927 162.825 45.193 1.00 55.74 O
ATOM 4 OP2 G B 44 61.838 160.813 44.016 1.00 56.89 O
ATOM 5 O5' G B 44 62.957 162.650 42.709 1.00 56.50 O
ATOM 6 C5' G B 44 61.753 163.066 42.047 1.00 57.58 C
ATOM 7 C4' G B 44 61.988 163.145 40.555 1.00 58.78 C
ATOM 8 O4' G B 44 62.476 161.869 40.067 1.00 58.86 O
ATOM 9 C3' G B 44 60.760 163.469 39.717 1.00 59.81 C
ATOM 10 O3' G B 44 60.633 164.871 39.537 1.00 59.50 O
ATOM 11 C2' G B 44 61.057 162.764 38.404 1.00 61.15 C
ATOM 12 O2' G B 44 61.965 163.509 37.614 1.00 64.71 O
ATOM 13 C1' G B 44 61.755 161.497 38.904 1.00 60.99 C
ATOM 14 N9 G B 44 60.854 160.408 39.271 1.00 59.99 N
ATOM 15 C8 G B 44 60.753 159.823 40.506 1.00 60.09 C
ATOM 16 N7 G B 44 59.891 158.849 40.542 1.00 62.10 N
ATOM 17 C5 G B 44 59.384 158.788 39.254 1.00 60.32 C
ATOM 18 C6 G B 44 58.415 157.914 38.688 1.00 60.73 C
ATOM 19 O6 G B 44 57.796 156.984 39.232 1.00 58.86 O
ATOM 20 N1 G B 44 58.193 158.203 37.349 1.00 60.00 N
ATOM 21 C2 G B 44 58.820 159.193 36.644 1.00 59.25 C
ATOM 22 N2 G B 44 58.465 159.303 35.366 1.00 58.30 N
ATOM 23 N3 G B 44 59.725 160.012 37.155 1.00 60.10 N
ATOM 24 C4 G B 44 59.958 159.752 38.457 1.00 60.12 C
ATOM 25 P U B 45 59.225 165.579 39.800 1.00 60.85 P
ATOM 26 OP1 U B 45 59.400 167.041 39.635 1.00 61.76 O
ATOM 27 OP2 U B 45 58.655 165.047 41.062 1.00 63.36 O
ATOM 28 O5' U B 45 58.306 165.042 38.628 1.00 61.10 O
TER
Atoms:
OP1: (54.407,165.405,28.042)
OP2: (56.606,165.561,29.338)
C3': (55.192,161.792,31.499)
C1': (57.302,160.958,32.107)
C5': (56.369,162.413,29.258)
O4': (57.203,160.778,30.713)
C8: (57.896,163.423,31.731)
O2': (55.338,159.646,32.562)
C6: (60.426,164.161,34.066)
C5: (59.414,163.716,33.192)
C4: (59.022,162.395,33.309)
P: (55.697,164.799,28.443)
C4': (55.950,161.347,30.239)
C2': (55.851,160.963,32.587)
C2: (60.454,162.028,34.940)
N1: (60.932,163.272,34.942)
N3: (59.511,161.489,34.175)
N6: (60.908,165.403,34.077)
N7: (58.697,164.354,32.188)
N9: (58.035,162.208,32.363)
O5': (55.345,163.381,29.074)
O3': (53.787,161.491,31.404)
OP2: (56.606,165.561,29.338)
C3': (55.192,161.792,31.499)
C1': (57.302,160.958,32.107)
C5': (56.369,162.413,29.258)
O4': (57.203,160.778,30.713)
C8: (57.896,163.423,31.731)
O2': (55.338,159.646,32.562)
C6: (60.426,164.161,34.066)
C5: (59.414,163.716,33.192)
C4: (59.022,162.395,33.309)
P: (55.697,164.799,28.443)
C4': (55.950,161.347,30.239)
C2': (55.851,160.963,32.587)
C2: (60.454,162.028,34.940)
N1: (60.932,163.272,34.942)
N3: (59.511,161.489,34.175)
N6: (60.908,165.403,34.077)
N7: (58.697,164.354,32.188)
N9: (58.035,162.208,32.363)
O5': (55.345,163.381,29.074)
O3': (53.787,161.491,31.404)
OP1: (62.927,162.825,45.193)
OP2: (61.838,160.813,44.016)
C3': (60.760,163.469,39.717)
C1': (61.755,161.497,38.904)
C5': (61.753,163.066,42.047)
O6: (57.796,156.984,39.232)
O4': (62.476,161.869,40.067)
C8: (60.753,159.823,40.506)
C2: (58.820,159.193,36.644)
C6: (58.415,157.914,38.688)
C5: (59.384,158.788,39.254)
C4: (59.958,159.752,38.457)
P: (62.918,161.843,44.081)
C4': (61.988,163.145,40.555)
C2': (61.057,162.764,38.404)
O2': (61.965,163.509,37.614)
N1: (58.193,158.203,37.349)
N2: (58.465,159.303,35.366)
N3: (59.725,160.012,37.155)
N7: (59.891,158.849,40.542)
N9: (60.854,160.408,39.271)
O5': (62.957,162.650,42.709)
O3': (60.633,164.871,39.537)
OP2: (61.838,160.813,44.016)
C3': (60.760,163.469,39.717)
C1': (61.755,161.497,38.904)
C5': (61.753,163.066,42.047)
O6: (57.796,156.984,39.232)
O4': (62.476,161.869,40.067)
C8: (60.753,159.823,40.506)
C2: (58.820,159.193,36.644)
C6: (58.415,157.914,38.688)
C5: (59.384,158.788,39.254)
C4: (59.958,159.752,38.457)
P: (62.918,161.843,44.081)
C4': (61.988,163.145,40.555)
C2': (61.057,162.764,38.404)
O2': (61.965,163.509,37.614)
N1: (58.193,158.203,37.349)
N2: (58.465,159.303,35.366)
N3: (59.725,160.012,37.155)
N7: (59.891,158.849,40.542)
N9: (60.854,160.408,39.271)
O5': (62.957,162.650,42.709)
O3': (60.633,164.871,39.537)
Image (generated by PyMOL):