Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01041:01005
Extra
PDB:
ATOM 1 O3' A A1040 37.775 101.679 101.529 1.00 36.23 O
ATOM 2 P A A1041 37.608 101.297 103.082 1.00 34.55 P
ATOM 3 OP1 A A1041 36.184 101.556 103.408 1.00 36.10 O
ATOM 4 OP2 A A1041 38.671 101.935 103.897 1.00 36.75 O
ATOM 5 O5' A A1041 37.861 99.728 103.116 1.00 34.75 O
ATOM 6 C5' A A1041 37.022 98.833 102.381 1.00 32.34 C
ATOM 7 C4' A A1041 37.866 97.813 101.675 1.00 33.60 C
ATOM 8 O4' A A1041 38.804 98.509 100.811 1.00 35.87 O
ATOM 9 C3' A A1041 38.756 96.958 102.560 1.00 33.46 C
ATOM 10 O3' A A1041 38.011 95.880 103.131 1.00 34.89 O
ATOM 11 C2' A A1041 39.826 96.503 101.572 1.00 33.67 C
ATOM 12 O2' A A1041 39.406 95.460 100.722 1.00 32.25 O
ATOM 13 C1' A A1041 40.007 97.762 100.721 1.00 35.55 C
ATOM 14 N9 A A1041 41.124 98.598 101.164 1.00 36.73 N
ATOM 15 C8 A A1041 41.215 99.367 102.299 1.00 39.59 C
ATOM 16 N7 A A1041 42.372 99.968 102.438 1.00 39.02 N
ATOM 17 C5 A A1041 43.087 99.575 101.314 1.00 36.92 C
ATOM 18 C6 A A1041 44.387 99.862 100.877 1.00 35.41 C
ATOM 19 N6 A A1041 45.238 100.633 101.547 1.00 34.75 N
ATOM 20 N1 A A1041 44.791 99.317 99.712 1.00 35.78 N
ATOM 21 C2 A A1041 43.942 98.533 99.044 1.00 35.79 C
ATOM 22 N3 A A1041 42.701 98.183 99.355 1.00 36.86 N
ATOM 23 C4 A A1041 42.327 98.743 100.516 1.00 36.23 C
ATOM 24 P C A1042 38.707 94.865 104.176 1.00 35.60 P
ATOM 25 OP1 C A1042 40.185 94.883 104.015 1.00 34.74 O
ATOM 26 OP2 C A1042 37.982 93.576 104.032 1.00 36.16 O
ATOM 27 O5' C A1042 38.360 95.458 105.615 1.00 35.38 O
TER
ATOM 1 O3' G B1004 52.265 96.376 94.100 1.00 28.73 O
ATOM 2 P G B1005 52.165 95.695 95.577 1.00 30.19 P
ATOM 3 OP1 G B1005 53.345 96.107 96.374 1.00 27.51 O
ATOM 4 OP2 G B1005 51.861 94.247 95.432 1.00 27.22 O
ATOM 5 O5' G B1005 50.886 96.369 96.242 1.00 27.23 O
ATOM 6 C5' G B1005 50.918 97.733 96.672 1.00 25.69 C
ATOM 7 C4' G B1005 49.596 98.119 97.280 1.00 27.03 C
ATOM 8 O4' G B1005 48.541 97.956 96.296 1.00 28.77 O
ATOM 9 C3' G B1005 49.117 97.283 98.453 1.00 26.72 C
ATOM 10 O3' G B1005 49.723 97.687 99.672 1.00 29.37 O
ATOM 11 C2' G B1005 47.627 97.582 98.442 1.00 27.16 C
ATOM 12 O2' G B1005 47.352 98.881 98.937 1.00 23.73 O
ATOM 13 C1' G B1005 47.342 97.550 96.942 1.00 26.37 C
ATOM 14 N9 G B1005 46.993 96.213 96.468 1.00 25.22 N
ATOM 15 C8 G B1005 47.776 95.361 95.724 1.00 27.59 C
ATOM 16 N7 G B1005 47.189 94.226 95.458 1.00 25.00 N
ATOM 17 C5 G B1005 45.943 94.339 96.057 1.00 25.16 C
ATOM 18 C6 G B1005 44.862 93.426 96.104 1.00 25.63 C
ATOM 19 O6 G B1005 44.774 92.300 95.591 1.00 28.67 O
ATOM 20 N1 G B1005 43.800 93.935 96.834 1.00 24.62 N
ATOM 21 C2 G B1005 43.772 95.161 97.434 1.00 25.70 C
ATOM 22 N2 G B1005 42.665 95.460 98.107 1.00 24.99 N
ATOM 23 N3 G B1005 44.763 96.031 97.383 1.00 27.68 N
ATOM 24 C4 G B1005 45.811 95.557 96.686 1.00 25.89 C
ATOM 25 P U B1006 49.872 96.634 100.875 1.00 28.64 P
ATOM 26 OP1 U B1006 50.704 97.284 101.917 1.00 31.89 O
ATOM 27 OP2 U B1006 50.292 95.336 100.302 1.00 28.35 O
ATOM 28 O5' U B1006 48.401 96.476 101.448 1.00 24.85 O
TER
ATOM 2 P A A1041 37.608 101.297 103.082 1.00 34.55 P
ATOM 3 OP1 A A1041 36.184 101.556 103.408 1.00 36.10 O
ATOM 4 OP2 A A1041 38.671 101.935 103.897 1.00 36.75 O
ATOM 5 O5' A A1041 37.861 99.728 103.116 1.00 34.75 O
ATOM 6 C5' A A1041 37.022 98.833 102.381 1.00 32.34 C
ATOM 7 C4' A A1041 37.866 97.813 101.675 1.00 33.60 C
ATOM 8 O4' A A1041 38.804 98.509 100.811 1.00 35.87 O
ATOM 9 C3' A A1041 38.756 96.958 102.560 1.00 33.46 C
ATOM 10 O3' A A1041 38.011 95.880 103.131 1.00 34.89 O
ATOM 11 C2' A A1041 39.826 96.503 101.572 1.00 33.67 C
ATOM 12 O2' A A1041 39.406 95.460 100.722 1.00 32.25 O
ATOM 13 C1' A A1041 40.007 97.762 100.721 1.00 35.55 C
ATOM 14 N9 A A1041 41.124 98.598 101.164 1.00 36.73 N
ATOM 15 C8 A A1041 41.215 99.367 102.299 1.00 39.59 C
ATOM 16 N7 A A1041 42.372 99.968 102.438 1.00 39.02 N
ATOM 17 C5 A A1041 43.087 99.575 101.314 1.00 36.92 C
ATOM 18 C6 A A1041 44.387 99.862 100.877 1.00 35.41 C
ATOM 19 N6 A A1041 45.238 100.633 101.547 1.00 34.75 N
ATOM 20 N1 A A1041 44.791 99.317 99.712 1.00 35.78 N
ATOM 21 C2 A A1041 43.942 98.533 99.044 1.00 35.79 C
ATOM 22 N3 A A1041 42.701 98.183 99.355 1.00 36.86 N
ATOM 23 C4 A A1041 42.327 98.743 100.516 1.00 36.23 C
ATOM 24 P C A1042 38.707 94.865 104.176 1.00 35.60 P
ATOM 25 OP1 C A1042 40.185 94.883 104.015 1.00 34.74 O
ATOM 26 OP2 C A1042 37.982 93.576 104.032 1.00 36.16 O
ATOM 27 O5' C A1042 38.360 95.458 105.615 1.00 35.38 O
TER
ATOM 1 O3' G B1004 52.265 96.376 94.100 1.00 28.73 O
ATOM 2 P G B1005 52.165 95.695 95.577 1.00 30.19 P
ATOM 3 OP1 G B1005 53.345 96.107 96.374 1.00 27.51 O
ATOM 4 OP2 G B1005 51.861 94.247 95.432 1.00 27.22 O
ATOM 5 O5' G B1005 50.886 96.369 96.242 1.00 27.23 O
ATOM 6 C5' G B1005 50.918 97.733 96.672 1.00 25.69 C
ATOM 7 C4' G B1005 49.596 98.119 97.280 1.00 27.03 C
ATOM 8 O4' G B1005 48.541 97.956 96.296 1.00 28.77 O
ATOM 9 C3' G B1005 49.117 97.283 98.453 1.00 26.72 C
ATOM 10 O3' G B1005 49.723 97.687 99.672 1.00 29.37 O
ATOM 11 C2' G B1005 47.627 97.582 98.442 1.00 27.16 C
ATOM 12 O2' G B1005 47.352 98.881 98.937 1.00 23.73 O
ATOM 13 C1' G B1005 47.342 97.550 96.942 1.00 26.37 C
ATOM 14 N9 G B1005 46.993 96.213 96.468 1.00 25.22 N
ATOM 15 C8 G B1005 47.776 95.361 95.724 1.00 27.59 C
ATOM 16 N7 G B1005 47.189 94.226 95.458 1.00 25.00 N
ATOM 17 C5 G B1005 45.943 94.339 96.057 1.00 25.16 C
ATOM 18 C6 G B1005 44.862 93.426 96.104 1.00 25.63 C
ATOM 19 O6 G B1005 44.774 92.300 95.591 1.00 28.67 O
ATOM 20 N1 G B1005 43.800 93.935 96.834 1.00 24.62 N
ATOM 21 C2 G B1005 43.772 95.161 97.434 1.00 25.70 C
ATOM 22 N2 G B1005 42.665 95.460 98.107 1.00 24.99 N
ATOM 23 N3 G B1005 44.763 96.031 97.383 1.00 27.68 N
ATOM 24 C4 G B1005 45.811 95.557 96.686 1.00 25.89 C
ATOM 25 P U B1006 49.872 96.634 100.875 1.00 28.64 P
ATOM 26 OP1 U B1006 50.704 97.284 101.917 1.00 31.89 O
ATOM 27 OP2 U B1006 50.292 95.336 100.302 1.00 28.35 O
ATOM 28 O5' U B1006 48.401 96.476 101.448 1.00 24.85 O
TER
Atoms:
OP1: (36.184,101.556,103.408)
OP2: (38.671,101.935,103.897)
C3': (38.756,96.958,102.560)
C1': (40.007,97.762,100.721)
C5': (37.022,98.833,102.381)
O4': (38.804,98.509,100.811)
C8: (41.215,99.367,102.299)
O2': (39.406,95.460,100.722)
C6: (44.387,99.862,100.877)
C5: (43.087,99.575,101.314)
C4: (42.327,98.743,100.516)
P: (37.608,101.297,103.082)
C4': (37.866,97.813,101.675)
C2': (39.826,96.503,101.572)
C2: (43.942,98.533,99.044)
N1: (44.791,99.317,99.712)
N3: (42.701,98.183,99.355)
N6: (45.238,100.633,101.547)
N7: (42.372,99.968,102.438)
N9: (41.124,98.598,101.164)
O5': (37.861,99.728,103.116)
O3': (38.011,95.880,103.131)
OP2: (38.671,101.935,103.897)
C3': (38.756,96.958,102.560)
C1': (40.007,97.762,100.721)
C5': (37.022,98.833,102.381)
O4': (38.804,98.509,100.811)
C8: (41.215,99.367,102.299)
O2': (39.406,95.460,100.722)
C6: (44.387,99.862,100.877)
C5: (43.087,99.575,101.314)
C4: (42.327,98.743,100.516)
P: (37.608,101.297,103.082)
C4': (37.866,97.813,101.675)
C2': (39.826,96.503,101.572)
C2: (43.942,98.533,99.044)
N1: (44.791,99.317,99.712)
N3: (42.701,98.183,99.355)
N6: (45.238,100.633,101.547)
N7: (42.372,99.968,102.438)
N9: (41.124,98.598,101.164)
O5': (37.861,99.728,103.116)
O3': (38.011,95.880,103.131)
OP1: (53.345,96.107,96.374)
OP2: (51.861,94.247,95.432)
C3': (49.117,97.283,98.453)
C1': (47.342,97.550,96.942)
C5': (50.918,97.733,96.672)
O6: (44.774,92.300,95.591)
O4': (48.541,97.956,96.296)
C8: (47.776,95.361,95.724)
C2: (43.772,95.161,97.434)
C6: (44.862,93.426,96.104)
C5: (45.943,94.339,96.057)
C4: (45.811,95.557,96.686)
P: (52.165,95.695,95.577)
C4': (49.596,98.119,97.280)
C2': (47.627,97.582,98.442)
O2': (47.352,98.881,98.937)
N1: (43.800,93.935,96.834)
N2: (42.665,95.460,98.107)
N3: (44.763,96.031,97.383)
N7: (47.189,94.226,95.458)
N9: (46.993,96.213,96.468)
O5': (50.886,96.369,96.242)
O3': (49.723,97.687,99.672)
OP2: (51.861,94.247,95.432)
C3': (49.117,97.283,98.453)
C1': (47.342,97.550,96.942)
C5': (50.918,97.733,96.672)
O6: (44.774,92.300,95.591)
O4': (48.541,97.956,96.296)
C8: (47.776,95.361,95.724)
C2: (43.772,95.161,97.434)
C6: (44.862,93.426,96.104)
C5: (45.943,94.339,96.057)
C4: (45.811,95.557,96.686)
P: (52.165,95.695,95.577)
C4': (49.596,98.119,97.280)
C2': (47.627,97.582,98.442)
O2': (47.352,98.881,98.937)
N1: (43.800,93.935,96.834)
N2: (42.665,95.460,98.107)
N3: (44.763,96.031,97.383)
N7: (47.189,94.226,95.458)
N9: (46.993,96.213,96.468)
O5': (50.886,96.369,96.242)
O3': (49.723,97.687,99.672)
Image (generated by PyMOL):