Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0524:02021
Extra
PDB:
ATOM 1 O3' G A 523 29.046 127.446 106.125 1.00 52.85 O
ATOM 2 P A A 524 28.551 126.148 105.336 1.00 55.70 P
ATOM 3 OP1 A A 524 27.138 126.359 104.932 1.00 55.39 O
ATOM 4 OP2 A A 524 28.912 124.951 106.143 1.00 54.21 O
ATOM 5 O5' A A 524 29.476 126.148 104.039 1.00 54.96 O
ATOM 6 C5' A A 524 29.580 127.300 103.177 1.00 50.95 C
ATOM 7 C4' A A 524 30.953 127.344 102.528 1.00 49.71 C
ATOM 8 O4' A A 524 31.918 127.934 103.430 1.00 50.89 O
ATOM 9 C3' A A 524 31.553 126.001 102.147 1.00 47.94 C
ATOM 10 O3' A A 524 31.078 125.600 100.875 1.00 47.18 O
ATOM 11 C2' A A 524 33.052 126.292 102.119 1.00 48.91 C
ATOM 12 O2' A A 524 33.515 126.857 100.912 1.00 49.43 O
ATOM 13 C1' A A 524 33.188 127.342 103.222 1.00 48.83 C
ATOM 14 N9 A A 524 33.684 126.840 104.501 1.00 47.13 N
ATOM 15 C8 A A 524 33.090 125.970 105.376 1.00 47.24 C
ATOM 16 N7 A A 524 33.808 125.724 106.443 1.00 47.61 N
ATOM 17 C5 A A 524 34.956 126.482 106.253 1.00 48.85 C
ATOM 18 C6 A A 524 36.121 126.656 107.022 1.00 48.64 C
ATOM 19 N6 A A 524 36.339 126.052 108.191 1.00 50.94 N
ATOM 20 N1 A A 524 37.069 127.484 106.545 1.00 48.06 N
ATOM 21 C2 A A 524 36.856 128.097 105.384 1.00 49.02 C
ATOM 22 N3 A A 524 35.810 128.019 104.571 1.00 50.69 N
ATOM 23 C4 A A 524 34.886 127.180 105.066 1.00 48.51 C
ATOM 24 P G A 525 30.376 124.173 100.694 1.00 47.45 P
ATOM 25 OP1 G A 525 29.167 124.403 99.877 1.00 49.66 O
ATOM 26 OP2 G A 525 30.252 123.535 102.027 1.00 48.52 O
ATOM 27 O5' G A 525 31.411 123.343 99.810 1.00 47.91 O
TER
ATOM 1 O3' A B2020 44.541 123.440 106.034 1.00 44.89 O
ATOM 2 P G B2021 45.160 124.849 105.554 1.00 47.82 P
ATOM 3 OP1 G B2021 45.236 124.802 104.059 1.00 44.85 O
ATOM 4 OP2 G B2021 46.374 125.174 106.333 1.00 48.58 O
ATOM 5 O5' G B2021 44.056 125.901 106.006 1.00 44.53 O
ATOM 6 C5' G B2021 43.647 125.992 107.381 1.00 42.79 C
ATOM 7 C4' G B2021 42.253 126.565 107.467 1.00 42.66 C
ATOM 8 O4' G B2021 42.247 127.842 106.778 1.00 43.28 O
ATOM 9 C3' G B2021 41.170 125.756 106.770 1.00 40.85 C
ATOM 10 O3' G B2021 40.611 124.779 107.634 1.00 39.33 O
ATOM 11 C2' G B2021 40.149 126.823 106.431 1.00 40.83 C
ATOM 12 O2' G B2021 39.452 127.202 107.597 1.00 39.20 O
ATOM 13 C1' G B2021 41.058 127.980 106.024 1.00 41.56 C
ATOM 14 N9 G B2021 41.435 128.060 104.610 1.00 42.19 N
ATOM 15 C8 G B2021 42.711 128.206 104.124 1.00 42.66 C
ATOM 16 N7 G B2021 42.762 128.307 102.825 1.00 41.86 N
ATOM 17 C5 G B2021 41.442 128.215 102.420 1.00 42.48 C
ATOM 18 C6 G B2021 40.885 128.273 101.127 1.00 43.93 C
ATOM 19 O6 G B2021 41.465 128.448 100.042 1.00 44.71 O
ATOM 20 N1 G B2021 39.506 128.111 101.161 1.00 43.96 N
ATOM 21 C2 G B2021 38.762 127.925 102.293 1.00 43.16 C
ATOM 22 N2 G B2021 37.463 127.740 102.106 1.00 44.94 N
ATOM 23 N3 G B2021 39.263 127.904 103.512 1.00 43.32 N
ATOM 24 C4 G B2021 40.605 128.046 103.504 1.00 43.14 C
ATOM 25 P U B2022 40.327 123.305 107.082 1.00 40.66 P
ATOM 26 OP1 U B2022 39.766 122.520 108.201 1.00 40.47 O
ATOM 27 OP2 U B2022 41.550 122.845 106.393 1.00 40.00 O
ATOM 28 O5' U B2022 39.199 123.480 105.976 1.00 40.02 O
TER
ATOM 2 P A A 524 28.551 126.148 105.336 1.00 55.70 P
ATOM 3 OP1 A A 524 27.138 126.359 104.932 1.00 55.39 O
ATOM 4 OP2 A A 524 28.912 124.951 106.143 1.00 54.21 O
ATOM 5 O5' A A 524 29.476 126.148 104.039 1.00 54.96 O
ATOM 6 C5' A A 524 29.580 127.300 103.177 1.00 50.95 C
ATOM 7 C4' A A 524 30.953 127.344 102.528 1.00 49.71 C
ATOM 8 O4' A A 524 31.918 127.934 103.430 1.00 50.89 O
ATOM 9 C3' A A 524 31.553 126.001 102.147 1.00 47.94 C
ATOM 10 O3' A A 524 31.078 125.600 100.875 1.00 47.18 O
ATOM 11 C2' A A 524 33.052 126.292 102.119 1.00 48.91 C
ATOM 12 O2' A A 524 33.515 126.857 100.912 1.00 49.43 O
ATOM 13 C1' A A 524 33.188 127.342 103.222 1.00 48.83 C
ATOM 14 N9 A A 524 33.684 126.840 104.501 1.00 47.13 N
ATOM 15 C8 A A 524 33.090 125.970 105.376 1.00 47.24 C
ATOM 16 N7 A A 524 33.808 125.724 106.443 1.00 47.61 N
ATOM 17 C5 A A 524 34.956 126.482 106.253 1.00 48.85 C
ATOM 18 C6 A A 524 36.121 126.656 107.022 1.00 48.64 C
ATOM 19 N6 A A 524 36.339 126.052 108.191 1.00 50.94 N
ATOM 20 N1 A A 524 37.069 127.484 106.545 1.00 48.06 N
ATOM 21 C2 A A 524 36.856 128.097 105.384 1.00 49.02 C
ATOM 22 N3 A A 524 35.810 128.019 104.571 1.00 50.69 N
ATOM 23 C4 A A 524 34.886 127.180 105.066 1.00 48.51 C
ATOM 24 P G A 525 30.376 124.173 100.694 1.00 47.45 P
ATOM 25 OP1 G A 525 29.167 124.403 99.877 1.00 49.66 O
ATOM 26 OP2 G A 525 30.252 123.535 102.027 1.00 48.52 O
ATOM 27 O5' G A 525 31.411 123.343 99.810 1.00 47.91 O
TER
ATOM 1 O3' A B2020 44.541 123.440 106.034 1.00 44.89 O
ATOM 2 P G B2021 45.160 124.849 105.554 1.00 47.82 P
ATOM 3 OP1 G B2021 45.236 124.802 104.059 1.00 44.85 O
ATOM 4 OP2 G B2021 46.374 125.174 106.333 1.00 48.58 O
ATOM 5 O5' G B2021 44.056 125.901 106.006 1.00 44.53 O
ATOM 6 C5' G B2021 43.647 125.992 107.381 1.00 42.79 C
ATOM 7 C4' G B2021 42.253 126.565 107.467 1.00 42.66 C
ATOM 8 O4' G B2021 42.247 127.842 106.778 1.00 43.28 O
ATOM 9 C3' G B2021 41.170 125.756 106.770 1.00 40.85 C
ATOM 10 O3' G B2021 40.611 124.779 107.634 1.00 39.33 O
ATOM 11 C2' G B2021 40.149 126.823 106.431 1.00 40.83 C
ATOM 12 O2' G B2021 39.452 127.202 107.597 1.00 39.20 O
ATOM 13 C1' G B2021 41.058 127.980 106.024 1.00 41.56 C
ATOM 14 N9 G B2021 41.435 128.060 104.610 1.00 42.19 N
ATOM 15 C8 G B2021 42.711 128.206 104.124 1.00 42.66 C
ATOM 16 N7 G B2021 42.762 128.307 102.825 1.00 41.86 N
ATOM 17 C5 G B2021 41.442 128.215 102.420 1.00 42.48 C
ATOM 18 C6 G B2021 40.885 128.273 101.127 1.00 43.93 C
ATOM 19 O6 G B2021 41.465 128.448 100.042 1.00 44.71 O
ATOM 20 N1 G B2021 39.506 128.111 101.161 1.00 43.96 N
ATOM 21 C2 G B2021 38.762 127.925 102.293 1.00 43.16 C
ATOM 22 N2 G B2021 37.463 127.740 102.106 1.00 44.94 N
ATOM 23 N3 G B2021 39.263 127.904 103.512 1.00 43.32 N
ATOM 24 C4 G B2021 40.605 128.046 103.504 1.00 43.14 C
ATOM 25 P U B2022 40.327 123.305 107.082 1.00 40.66 P
ATOM 26 OP1 U B2022 39.766 122.520 108.201 1.00 40.47 O
ATOM 27 OP2 U B2022 41.550 122.845 106.393 1.00 40.00 O
ATOM 28 O5' U B2022 39.199 123.480 105.976 1.00 40.02 O
TER
Atoms:
OP1: (27.138,126.359,104.932)
OP2: (28.912,124.951,106.143)
C3': (31.553,126.001,102.147)
C1': (33.188,127.342,103.222)
C5': (29.580,127.300,103.177)
O4': (31.918,127.934,103.430)
C8: (33.090,125.970,105.376)
O2': (33.515,126.857,100.912)
C6: (36.121,126.656,107.022)
C5: (34.956,126.482,106.253)
C4: (34.886,127.180,105.066)
P: (28.551,126.148,105.336)
C4': (30.953,127.344,102.528)
C2': (33.052,126.292,102.119)
C2: (36.856,128.097,105.384)
N1: (37.069,127.484,106.545)
N3: (35.810,128.019,104.571)
N6: (36.339,126.052,108.191)
N7: (33.808,125.724,106.443)
N9: (33.684,126.840,104.501)
O5': (29.476,126.148,104.039)
O3': (31.078,125.600,100.875)
OP2: (28.912,124.951,106.143)
C3': (31.553,126.001,102.147)
C1': (33.188,127.342,103.222)
C5': (29.580,127.300,103.177)
O4': (31.918,127.934,103.430)
C8: (33.090,125.970,105.376)
O2': (33.515,126.857,100.912)
C6: (36.121,126.656,107.022)
C5: (34.956,126.482,106.253)
C4: (34.886,127.180,105.066)
P: (28.551,126.148,105.336)
C4': (30.953,127.344,102.528)
C2': (33.052,126.292,102.119)
C2: (36.856,128.097,105.384)
N1: (37.069,127.484,106.545)
N3: (35.810,128.019,104.571)
N6: (36.339,126.052,108.191)
N7: (33.808,125.724,106.443)
N9: (33.684,126.840,104.501)
O5': (29.476,126.148,104.039)
O3': (31.078,125.600,100.875)
OP1: (45.236,124.802,104.059)
OP2: (46.374,125.174,106.333)
C3': (41.170,125.756,106.770)
C1': (41.058,127.980,106.024)
C5': (43.647,125.992,107.381)
O6: (41.465,128.448,100.042)
O4': (42.247,127.842,106.778)
C8: (42.711,128.206,104.124)
C2: (38.762,127.925,102.293)
C6: (40.885,128.273,101.127)
C5: (41.442,128.215,102.420)
C4: (40.605,128.046,103.504)
P: (45.160,124.849,105.554)
C4': (42.253,126.565,107.467)
C2': (40.149,126.823,106.431)
O2': (39.452,127.202,107.597)
N1: (39.506,128.111,101.161)
N2: (37.463,127.740,102.106)
N3: (39.263,127.904,103.512)
N7: (42.762,128.307,102.825)
N9: (41.435,128.060,104.610)
O5': (44.056,125.901,106.006)
O3': (40.611,124.779,107.634)
OP2: (46.374,125.174,106.333)
C3': (41.170,125.756,106.770)
C1': (41.058,127.980,106.024)
C5': (43.647,125.992,107.381)
O6: (41.465,128.448,100.042)
O4': (42.247,127.842,106.778)
C8: (42.711,128.206,104.124)
C2: (38.762,127.925,102.293)
C6: (40.885,128.273,101.127)
C5: (41.442,128.215,102.420)
C4: (40.605,128.046,103.504)
P: (45.160,124.849,105.554)
C4': (42.253,126.565,107.467)
C2': (40.149,126.823,106.431)
O2': (39.452,127.202,107.597)
N1: (39.506,128.111,101.161)
N2: (37.463,127.740,102.106)
N3: (39.263,127.904,103.512)
N7: (42.762,128.307,102.825)
N9: (41.435,128.060,104.610)
O5': (44.056,125.901,106.006)
O3': (40.611,124.779,107.634)
Image (generated by PyMOL):