Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2XD0:W23:W6
Extra
PDB:
ATOM 1 O3' A A 22 11.467 3.441 33.387 1.00 85.53 O
ATOM 2 P A A 23 10.657 4.842 33.066 1.00 77.60 P
ATOM 3 OP1 A A 23 11.272 5.412 31.834 1.00 78.08 O
ATOM 4 OP2 A A 23 10.568 5.696 34.294 1.00 71.77 O
ATOM 5 O5' A A 23 9.180 4.278 32.770 1.00 75.95 O
ATOM 6 C5' A A 23 8.931 3.185 31.889 1.00 74.69 C
ATOM 7 C4' A A 23 7.637 2.495 32.236 1.00 70.60 C
ATOM 8 O4' A A 23 7.816 1.725 33.446 1.00 72.49 O
ATOM 9 C3' A A 23 6.452 3.405 32.517 1.00 64.63 C
ATOM 10 O3' A A 23 5.751 3.734 31.329 1.00 61.02 O
ATOM 11 C2' A A 23 5.605 2.577 33.469 1.00 61.84 C
ATOM 12 O2' A A 23 4.760 1.706 32.730 1.00 58.54 O
ATOM 13 C1' A A 23 6.642 1.743 34.223 1.00 67.21 C
ATOM 14 N9 A A 23 6.999 2.296 35.543 1.00 66.77 N
ATOM 15 C8 A A 23 7.374 3.581 35.806 1.00 65.01 C
ATOM 16 N7 A A 23 7.670 3.808 37.061 1.00 65.52 N
ATOM 17 C5 A A 23 7.472 2.588 37.677 1.00 67.29 C
ATOM 18 C6 A A 23 7.614 2.193 39.017 1.00 69.48 C
ATOM 19 N6 A A 23 7.998 3.010 39.999 1.00 70.72 N
ATOM 20 N1 A A 23 7.337 0.911 39.313 1.00 71.51 N
ATOM 21 C2 A A 23 6.949 0.108 38.308 1.00 71.68 C
ATOM 22 N3 A A 23 6.780 0.366 37.012 1.00 70.43 N
ATOM 23 C4 A A 23 7.060 1.647 36.753 1.00 67.94 C
ATOM 24 P G A 24 5.018 5.139 31.067 1.00 56.77 P
ATOM 25 OP1 G A 24 5.676 5.733 29.875 1.00 57.26 O
ATOM 26 OP2 G A 24 5.030 5.866 32.369 1.00 57.48 O
ATOM 27 O5' G A 24 3.561 4.720 30.627 1.00 52.71 O
TER
ATOM 1 O3' G B 5 3.324 -5.305 45.495 1.00 76.71 O
ATOM 2 P G B 6 2.219 -4.148 45.314 1.00 80.24 P
ATOM 3 OP1 G B 6 2.359 -3.250 46.497 1.00 79.00 O
ATOM 4 OP2 G B 6 0.901 -4.779 45.016 1.00 69.01 O
ATOM 5 O5' G B 6 2.786 -3.440 44.006 1.00 70.12 O
ATOM 6 C5' G B 6 2.998 -2.036 43.997 1.00 71.55 C
ATOM 7 C4' G B 6 4.120 -1.606 43.081 1.00 71.97 C
ATOM 8 O4' G B 6 4.553 -2.704 42.238 1.00 72.39 O
ATOM 9 C3' G B 6 3.751 -0.519 42.089 1.00 67.36 C
ATOM 10 O3' G B 6 3.734 0.775 42.656 1.00 67.46 O
ATOM 11 C2' G B 6 4.796 -0.708 41.002 1.00 68.92 C
ATOM 12 O2' G B 6 6.065 -0.249 41.452 1.00 74.24 O
ATOM 13 C1' G B 6 4.835 -2.233 40.936 1.00 70.25 C
ATOM 14 N9 G B 6 3.813 -2.816 40.035 1.00 65.71 N
ATOM 15 C8 G B 6 2.763 -3.575 40.482 1.00 63.89 C
ATOM 16 N7 G B 6 1.991 -4.008 39.536 1.00 61.18 N
ATOM 17 C5 G B 6 2.560 -3.520 38.373 1.00 60.66 C
ATOM 18 C6 G B 6 2.138 -3.687 37.024 1.00 58.53 C
ATOM 19 O6 G B 6 1.159 -4.310 36.580 1.00 57.00 O
ATOM 20 N1 G B 6 2.988 -3.034 36.143 1.00 59.27 N
ATOM 21 C2 G B 6 4.094 -2.319 36.507 1.00 62.25 C
ATOM 22 N2 G B 6 4.763 -1.777 35.481 1.00 63.38 N
ATOM 23 N3 G B 6 4.500 -2.157 37.761 1.00 64.68 N
ATOM 24 C4 G B 6 3.693 -2.782 38.652 1.00 63.47 C
ATOM 25 P U B 7 2.496 1.736 42.343 1.00 62.71 P
ATOM 26 OP1 U B 7 2.642 2.803 43.357 1.00 64.70 O
ATOM 27 OP2 U B 7 1.271 0.899 42.279 1.00 59.98 O
ATOM 28 O5' U B 7 2.825 2.302 40.888 1.00 60.80 O
TER
ATOM 2 P A A 23 10.657 4.842 33.066 1.00 77.60 P
ATOM 3 OP1 A A 23 11.272 5.412 31.834 1.00 78.08 O
ATOM 4 OP2 A A 23 10.568 5.696 34.294 1.00 71.77 O
ATOM 5 O5' A A 23 9.180 4.278 32.770 1.00 75.95 O
ATOM 6 C5' A A 23 8.931 3.185 31.889 1.00 74.69 C
ATOM 7 C4' A A 23 7.637 2.495 32.236 1.00 70.60 C
ATOM 8 O4' A A 23 7.816 1.725 33.446 1.00 72.49 O
ATOM 9 C3' A A 23 6.452 3.405 32.517 1.00 64.63 C
ATOM 10 O3' A A 23 5.751 3.734 31.329 1.00 61.02 O
ATOM 11 C2' A A 23 5.605 2.577 33.469 1.00 61.84 C
ATOM 12 O2' A A 23 4.760 1.706 32.730 1.00 58.54 O
ATOM 13 C1' A A 23 6.642 1.743 34.223 1.00 67.21 C
ATOM 14 N9 A A 23 6.999 2.296 35.543 1.00 66.77 N
ATOM 15 C8 A A 23 7.374 3.581 35.806 1.00 65.01 C
ATOM 16 N7 A A 23 7.670 3.808 37.061 1.00 65.52 N
ATOM 17 C5 A A 23 7.472 2.588 37.677 1.00 67.29 C
ATOM 18 C6 A A 23 7.614 2.193 39.017 1.00 69.48 C
ATOM 19 N6 A A 23 7.998 3.010 39.999 1.00 70.72 N
ATOM 20 N1 A A 23 7.337 0.911 39.313 1.00 71.51 N
ATOM 21 C2 A A 23 6.949 0.108 38.308 1.00 71.68 C
ATOM 22 N3 A A 23 6.780 0.366 37.012 1.00 70.43 N
ATOM 23 C4 A A 23 7.060 1.647 36.753 1.00 67.94 C
ATOM 24 P G A 24 5.018 5.139 31.067 1.00 56.77 P
ATOM 25 OP1 G A 24 5.676 5.733 29.875 1.00 57.26 O
ATOM 26 OP2 G A 24 5.030 5.866 32.369 1.00 57.48 O
ATOM 27 O5' G A 24 3.561 4.720 30.627 1.00 52.71 O
TER
ATOM 1 O3' G B 5 3.324 -5.305 45.495 1.00 76.71 O
ATOM 2 P G B 6 2.219 -4.148 45.314 1.00 80.24 P
ATOM 3 OP1 G B 6 2.359 -3.250 46.497 1.00 79.00 O
ATOM 4 OP2 G B 6 0.901 -4.779 45.016 1.00 69.01 O
ATOM 5 O5' G B 6 2.786 -3.440 44.006 1.00 70.12 O
ATOM 6 C5' G B 6 2.998 -2.036 43.997 1.00 71.55 C
ATOM 7 C4' G B 6 4.120 -1.606 43.081 1.00 71.97 C
ATOM 8 O4' G B 6 4.553 -2.704 42.238 1.00 72.39 O
ATOM 9 C3' G B 6 3.751 -0.519 42.089 1.00 67.36 C
ATOM 10 O3' G B 6 3.734 0.775 42.656 1.00 67.46 O
ATOM 11 C2' G B 6 4.796 -0.708 41.002 1.00 68.92 C
ATOM 12 O2' G B 6 6.065 -0.249 41.452 1.00 74.24 O
ATOM 13 C1' G B 6 4.835 -2.233 40.936 1.00 70.25 C
ATOM 14 N9 G B 6 3.813 -2.816 40.035 1.00 65.71 N
ATOM 15 C8 G B 6 2.763 -3.575 40.482 1.00 63.89 C
ATOM 16 N7 G B 6 1.991 -4.008 39.536 1.00 61.18 N
ATOM 17 C5 G B 6 2.560 -3.520 38.373 1.00 60.66 C
ATOM 18 C6 G B 6 2.138 -3.687 37.024 1.00 58.53 C
ATOM 19 O6 G B 6 1.159 -4.310 36.580 1.00 57.00 O
ATOM 20 N1 G B 6 2.988 -3.034 36.143 1.00 59.27 N
ATOM 21 C2 G B 6 4.094 -2.319 36.507 1.00 62.25 C
ATOM 22 N2 G B 6 4.763 -1.777 35.481 1.00 63.38 N
ATOM 23 N3 G B 6 4.500 -2.157 37.761 1.00 64.68 N
ATOM 24 C4 G B 6 3.693 -2.782 38.652 1.00 63.47 C
ATOM 25 P U B 7 2.496 1.736 42.343 1.00 62.71 P
ATOM 26 OP1 U B 7 2.642 2.803 43.357 1.00 64.70 O
ATOM 27 OP2 U B 7 1.271 0.899 42.279 1.00 59.98 O
ATOM 28 O5' U B 7 2.825 2.302 40.888 1.00 60.80 O
TER
Atoms:
OP1: (11.272,5.412,31.834)
OP2: (10.568,5.696,34.294)
C3': (6.452,3.405,32.517)
C1': (6.642,1.743,34.223)
C5': (8.931,3.185,31.889)
O4': (7.816,1.725,33.446)
C8: (7.374,3.581,35.806)
O2': (4.760,1.706,32.730)
C6: (7.614,2.193,39.017)
C5: (7.472,2.588,37.677)
C4: (7.060,1.647,36.753)
P: (10.657,4.842,33.066)
C4': (7.637,2.495,32.236)
C2': (5.605,2.577,33.469)
C2: (6.949,0.108,38.308)
N1: (7.337,0.911,39.313)
N3: (6.780,0.366,37.012)
N6: (7.998,3.010,39.999)
N7: (7.670,3.808,37.061)
N9: (6.999,2.296,35.543)
O5': (9.180,4.278,32.770)
O3': (5.751,3.734,31.329)
OP2: (10.568,5.696,34.294)
C3': (6.452,3.405,32.517)
C1': (6.642,1.743,34.223)
C5': (8.931,3.185,31.889)
O4': (7.816,1.725,33.446)
C8: (7.374,3.581,35.806)
O2': (4.760,1.706,32.730)
C6: (7.614,2.193,39.017)
C5: (7.472,2.588,37.677)
C4: (7.060,1.647,36.753)
P: (10.657,4.842,33.066)
C4': (7.637,2.495,32.236)
C2': (5.605,2.577,33.469)
C2: (6.949,0.108,38.308)
N1: (7.337,0.911,39.313)
N3: (6.780,0.366,37.012)
N6: (7.998,3.010,39.999)
N7: (7.670,3.808,37.061)
N9: (6.999,2.296,35.543)
O5': (9.180,4.278,32.770)
O3': (5.751,3.734,31.329)
OP1: (2.359,-3.250,46.497)
OP2: (0.901,-4.779,45.016)
C3': (3.751,-0.519,42.089)
C1': (4.835,-2.233,40.936)
C5': (2.998,-2.036,43.997)
O6: (1.159,-4.310,36.580)
O4': (4.553,-2.704,42.238)
C8: (2.763,-3.575,40.482)
C2: (4.094,-2.319,36.507)
C6: (2.138,-3.687,37.024)
C5: (2.560,-3.520,38.373)
C4: (3.693,-2.782,38.652)
P: (2.219,-4.148,45.314)
C4': (4.120,-1.606,43.081)
C2': (4.796,-0.708,41.002)
O2': (6.065,-0.249,41.452)
N1: (2.988,-3.034,36.143)
N2: (4.763,-1.777,35.481)
N3: (4.500,-2.157,37.761)
N7: (1.991,-4.008,39.536)
N9: (3.813,-2.816,40.035)
O5': (2.786,-3.440,44.006)
O3': (3.734,0.775,42.656)
OP2: (0.901,-4.779,45.016)
C3': (3.751,-0.519,42.089)
C1': (4.835,-2.233,40.936)
C5': (2.998,-2.036,43.997)
O6: (1.159,-4.310,36.580)
O4': (4.553,-2.704,42.238)
C8: (2.763,-3.575,40.482)
C2: (4.094,-2.319,36.507)
C6: (2.138,-3.687,37.024)
C5: (2.560,-3.520,38.373)
C4: (3.693,-2.782,38.652)
P: (2.219,-4.148,45.314)
C4': (4.120,-1.606,43.081)
C2': (4.796,-0.708,41.002)
O2': (6.065,-0.249,41.452)
N1: (2.988,-3.034,36.143)
N2: (4.763,-1.777,35.481)
N3: (4.500,-2.157,37.761)
N7: (1.991,-4.008,39.536)
N9: (3.813,-2.816,40.035)
O5': (2.786,-3.440,44.006)
O3': (3.734,0.775,42.656)
Image (generated by PyMOL):