ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJ9:0231:0262

Extra

PDB:
ATOM 1 O3' A A 230 93.172 107.713 3.787 1.00 66.26 O
ATOM 2 P A A 231 93.423 108.130 2.250 1.00 69.50 P
ATOM 3 OP1 A A 231 94.877 108.424 2.152 1.00 69.58 O
ATOM 4 OP2 A A 231 92.429 109.163 1.810 1.00 66.91 O
ATOM 5 O5' A A 231 93.113 106.793 1.441 1.00 68.58 O
ATOM 6 C5' A A 231 93.731 105.546 1.803 1.00 69.23 C
ATOM 7 C4' A A 231 93.000 104.395 1.152 1.00 70.71 C
ATOM 8 O4' A A 231 91.649 104.300 1.674 1.00 70.54 O
ATOM 9 C3' A A 231 92.795 104.517 -0.346 1.00 71.51 C
ATOM 10 O3' A A 231 93.978 104.134 -1.036 1.00 73.26 O
ATOM 11 C2' A A 231 91.619 103.574 -0.593 1.00 70.42 C
ATOM 12 O2' A A 231 91.989 102.206 -0.634 1.00 71.27 O
ATOM 13 C1' A A 231 90.778 103.810 0.665 1.00 67.60 C
ATOM 14 N9 A A 231 89.680 104.761 0.496 1.00 63.66 N
ATOM 15 C8 A A 231 89.746 106.121 0.310 1.00 63.25 C
ATOM 16 N7 A A 231 88.573 106.695 0.179 1.00 62.25 N
ATOM 17 C5 A A 231 87.674 105.644 0.288 1.00 61.76 C
ATOM 18 C6 A A 231 86.262 105.589 0.235 1.00 61.51 C
ATOM 19 N6 A A 231 85.478 106.656 0.028 1.00 59.56 N
ATOM 20 N1 A A 231 85.678 104.381 0.402 1.00 60.75 N
ATOM 21 C2 A A 231 86.461 103.310 0.597 1.00 61.11 C
ATOM 22 N3 A A 231 87.792 103.234 0.655 1.00 60.78 N
ATOM 23 C4 A A 231 88.343 104.448 0.493 1.00 61.78 C
ATOM 24 P C A 232 94.657 105.154 -2.067 1.00 73.89 P
ATOM 25 OP1 C A 232 95.837 104.443 -2.625 1.00 73.22 O
ATOM 26 OP2 C A 232 94.840 106.468 -1.397 1.00 73.91 O
ATOM 27 O5' C A 232 93.545 105.343 -3.189 1.00 72.31 O
TER

ATOM 1 O3' G B 261 78.469 97.998 1.207 1.00 79.51 O
ATOM 2 P G B 262 78.816 98.209 -0.352 1.00 78.85 P
ATOM 3 OP1 G B 262 77.611 98.823 -0.966 1.00 78.57 O
ATOM 4 OP2 G B 262 79.359 96.937 -0.906 1.00 78.15 O
ATOM 5 O5' G B 262 79.986 99.294 -0.355 1.00 76.87 O
ATOM 6 C5' G B 262 79.713 100.670 -0.037 1.00 74.35 C
ATOM 7 C4' G B 262 81.001 101.424 0.165 1.00 73.92 C
ATOM 8 O4' G B 262 81.795 100.732 1.166 1.00 73.32 O
ATOM 9 C3' G B 262 81.940 101.481 -1.028 1.00 74.65 C
ATOM 10 O3' G B 262 81.586 102.472 -1.980 1.00 76.91 O
ATOM 11 C2' G B 262 83.271 101.782 -0.361 1.00 73.20 C
ATOM 12 O2' G B 262 83.382 103.130 0.045 1.00 71.43 O
ATOM 13 C1' G B 262 83.177 100.876 0.864 1.00 71.97 C
ATOM 14 N9 G B 262 83.729 99.556 0.579 1.00 70.27 N
ATOM 15 C8 G B 262 83.044 98.372 0.437 1.00 69.47 C
ATOM 16 N7 G B 262 83.825 97.356 0.190 1.00 68.52 N
ATOM 17 C5 G B 262 85.101 97.902 0.164 1.00 68.04 C
ATOM 18 C6 G B 262 86.365 97.288 -0.059 1.00 68.18 C
ATOM 19 O6 G B 262 86.618 96.098 -0.283 1.00 68.24 O
ATOM 20 N1 G B 262 87.399 98.216 -0.007 1.00 68.95 N
ATOM 21 C2 G B 262 87.243 99.559 0.227 1.00 69.52 C
ATOM 22 N2 G B 262 88.363 100.289 0.233 1.00 69.65 N
ATOM 23 N3 G B 262 86.073 100.144 0.438 1.00 69.08 N
ATOM 24 C4 G B 262 85.055 99.261 0.395 1.00 68.92 C
ATOM 25 P G B 263 82.045 102.294 -3.513 1.00 77.86 P
ATOM 26 OP1 G B 263 81.431 103.421 -4.274 1.00 75.22 O
ATOM 27 OP2 G B 263 81.779 100.886 -3.932 1.00 77.69 O
ATOM 28 O5' G B 263 83.626 102.468 -3.467 1.00 75.22 O
TER

Atoms:
OP1: (94.877,108.424,2.152)
OP2: (92.429,109.163,1.810)
C3': (92.795,104.517,-0.346)
C1': (90.778,103.810,0.665)
C5': (93.731,105.546,1.803)
O4': (91.649,104.300,1.674)
C8: (89.746,106.121,0.310)
O2': (91.989,102.206,-0.634)
C6: (86.262,105.589,0.235)
C5: (87.674,105.644,0.288)
C4: (88.343,104.448,0.493)
P: (93.423,108.130,2.250)
C4': (93.000,104.395,1.152)
C2': (91.619,103.574,-0.593)
C2: (86.461,103.310,0.597)
N1: (85.678,104.381,0.402)
N3: (87.792,103.234,0.655)
N6: (85.478,106.656,0.028)
N7: (88.573,106.695,0.179)
N9: (89.680,104.761,0.496)
O5': (93.113,106.793,1.441)
O3': (93.978,104.134,-1.036)
OP1: (77.611,98.823,-0.966)
OP2: (79.359,96.937,-0.906)
C3': (81.940,101.481,-1.028)
C1': (83.177,100.876,0.864)
C5': (79.713,100.670,-0.037)
O6: (86.618,96.098,-0.283)
O4': (81.795,100.732,1.166)
C8: (83.044,98.372,0.437)
C2: (87.243,99.559,0.227)
C6: (86.365,97.288,-0.059)
C5: (85.101,97.902,0.164)
C4: (85.055,99.261,0.395)
P: (78.816,98.209,-0.352)
C4': (81.001,101.424,0.165)
C2': (83.271,101.782,-0.361)
O2': (83.382,103.130,0.045)
N1: (87.399,98.216,-0.007)
N2: (88.363,100.289,0.233)
N3: (86.073,100.144,0.438)
N7: (83.825,97.356,0.190)
N9: (83.729,99.556,0.579)
O5': (79.986,99.294,-0.355)
O3': (81.586,102.472,-1.980)
Image (generated by PyMOL):
PyMOL image
show in jmol