Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0524:02021
Extra
PDB:
ATOM 1 O3' G A 523 29.098 126.957 106.059 1.00 41.62 O
ATOM 2 P A A 524 28.333 126.000 105.038 1.00 44.41 P
ATOM 3 OP1 A A 524 27.105 126.711 104.610 1.00 45.65 O
ATOM 4 OP2 A A 524 28.229 124.641 105.625 1.00 43.61 O
ATOM 5 O5' A A 524 29.333 125.936 103.802 1.00 43.93 O
ATOM 6 C5' A A 524 29.367 126.980 102.815 1.00 41.60 C
ATOM 7 C4' A A 524 30.727 127.036 102.172 1.00 41.85 C
ATOM 8 O4' A A 524 31.670 127.619 103.095 1.00 43.71 O
ATOM 9 C3' A A 524 31.331 125.690 101.818 1.00 41.25 C
ATOM 10 O3' A A 524 30.861 125.276 100.548 1.00 41.65 O
ATOM 11 C2' A A 524 32.824 125.988 101.789 1.00 41.71 C
ATOM 12 O2' A A 524 33.253 126.532 100.562 1.00 41.25 O
ATOM 13 C1' A A 524 32.946 127.053 102.882 1.00 42.94 C
ATOM 14 N9 A A 524 33.462 126.593 104.167 1.00 44.38 N
ATOM 15 C8 A A 524 32.895 125.735 105.075 1.00 44.56 C
ATOM 16 N7 A A 524 33.632 125.530 106.139 1.00 45.04 N
ATOM 17 C5 A A 524 34.761 126.305 105.914 1.00 46.16 C
ATOM 18 C6 A A 524 35.931 126.515 106.660 1.00 46.10 C
ATOM 19 N6 A A 524 36.176 125.938 107.834 1.00 48.85 N
ATOM 20 N1 A A 524 36.857 127.350 106.150 1.00 45.21 N
ATOM 21 C2 A A 524 36.620 127.929 104.975 1.00 45.55 C
ATOM 22 N3 A A 524 35.568 127.810 104.177 1.00 46.33 N
ATOM 23 C4 A A 524 34.664 126.970 104.709 1.00 45.76 C
ATOM 24 P G A 525 30.212 123.823 100.366 1.00 41.61 P
ATOM 25 OP1 G A 525 28.954 124.018 99.624 1.00 42.76 O
ATOM 26 OP2 G A 525 30.185 123.128 101.673 1.00 41.84 O
ATOM 27 O5' G A 525 31.255 123.081 99.422 1.00 39.98 O
TER
ATOM 1 O3' A B2020 44.354 123.200 105.797 1.00 41.05 O
ATOM 2 P G B2021 44.939 124.618 105.312 1.00 43.31 P
ATOM 3 OP1 G B2021 45.052 124.543 103.823 1.00 40.45 O
ATOM 4 OP2 G B2021 46.124 124.989 106.129 1.00 41.35 O
ATOM 5 O5' G B2021 43.782 125.640 105.690 1.00 41.04 O
ATOM 6 C5' G B2021 43.397 125.837 107.062 1.00 39.76 C
ATOM 7 C4' G B2021 41.994 126.384 107.126 1.00 38.34 C
ATOM 8 O4' G B2021 41.968 127.662 106.450 1.00 38.01 O
ATOM 9 C3' G B2021 40.946 125.546 106.418 1.00 36.48 C
ATOM 10 O3' G B2021 40.399 124.570 107.288 1.00 37.33 O
ATOM 11 C2' G B2021 39.910 126.581 106.033 1.00 35.46 C
ATOM 12 O2' G B2021 39.128 126.929 107.147 1.00 33.11 O
ATOM 13 C1' G B2021 40.802 127.763 105.659 1.00 37.38 C
ATOM 14 N9 G B2021 41.230 127.802 104.262 1.00 39.31 N
ATOM 15 C8 G B2021 42.525 127.837 103.809 1.00 38.95 C
ATOM 16 N7 G B2021 42.614 127.898 102.512 1.00 40.38 N
ATOM 17 C5 G B2021 41.299 127.897 102.077 1.00 40.18 C
ATOM 18 C6 G B2021 40.774 127.949 100.768 1.00 41.44 C
ATOM 19 O6 G B2021 41.390 128.007 99.690 1.00 41.07 O
ATOM 20 N1 G B2021 39.384 127.920 100.778 1.00 42.13 N
ATOM 21 C2 G B2021 38.604 127.843 101.906 1.00 41.29 C
ATOM 22 N2 G B2021 37.285 127.797 101.712 1.00 42.29 N
ATOM 23 N3 G B2021 39.083 127.803 103.130 1.00 40.23 N
ATOM 24 C4 G B2021 40.430 127.831 103.143 1.00 39.72 C
ATOM 25 P U B2022 40.213 123.063 106.775 1.00 39.06 P
ATOM 26 OP1 U B2022 39.757 122.283 107.946 1.00 38.05 O
ATOM 27 OP2 U B2022 41.451 122.669 106.057 1.00 35.76 O
ATOM 28 O5' U B2022 39.022 123.134 105.724 1.00 35.85 O
TER
ATOM 2 P A A 524 28.333 126.000 105.038 1.00 44.41 P
ATOM 3 OP1 A A 524 27.105 126.711 104.610 1.00 45.65 O
ATOM 4 OP2 A A 524 28.229 124.641 105.625 1.00 43.61 O
ATOM 5 O5' A A 524 29.333 125.936 103.802 1.00 43.93 O
ATOM 6 C5' A A 524 29.367 126.980 102.815 1.00 41.60 C
ATOM 7 C4' A A 524 30.727 127.036 102.172 1.00 41.85 C
ATOM 8 O4' A A 524 31.670 127.619 103.095 1.00 43.71 O
ATOM 9 C3' A A 524 31.331 125.690 101.818 1.00 41.25 C
ATOM 10 O3' A A 524 30.861 125.276 100.548 1.00 41.65 O
ATOM 11 C2' A A 524 32.824 125.988 101.789 1.00 41.71 C
ATOM 12 O2' A A 524 33.253 126.532 100.562 1.00 41.25 O
ATOM 13 C1' A A 524 32.946 127.053 102.882 1.00 42.94 C
ATOM 14 N9 A A 524 33.462 126.593 104.167 1.00 44.38 N
ATOM 15 C8 A A 524 32.895 125.735 105.075 1.00 44.56 C
ATOM 16 N7 A A 524 33.632 125.530 106.139 1.00 45.04 N
ATOM 17 C5 A A 524 34.761 126.305 105.914 1.00 46.16 C
ATOM 18 C6 A A 524 35.931 126.515 106.660 1.00 46.10 C
ATOM 19 N6 A A 524 36.176 125.938 107.834 1.00 48.85 N
ATOM 20 N1 A A 524 36.857 127.350 106.150 1.00 45.21 N
ATOM 21 C2 A A 524 36.620 127.929 104.975 1.00 45.55 C
ATOM 22 N3 A A 524 35.568 127.810 104.177 1.00 46.33 N
ATOM 23 C4 A A 524 34.664 126.970 104.709 1.00 45.76 C
ATOM 24 P G A 525 30.212 123.823 100.366 1.00 41.61 P
ATOM 25 OP1 G A 525 28.954 124.018 99.624 1.00 42.76 O
ATOM 26 OP2 G A 525 30.185 123.128 101.673 1.00 41.84 O
ATOM 27 O5' G A 525 31.255 123.081 99.422 1.00 39.98 O
TER
ATOM 1 O3' A B2020 44.354 123.200 105.797 1.00 41.05 O
ATOM 2 P G B2021 44.939 124.618 105.312 1.00 43.31 P
ATOM 3 OP1 G B2021 45.052 124.543 103.823 1.00 40.45 O
ATOM 4 OP2 G B2021 46.124 124.989 106.129 1.00 41.35 O
ATOM 5 O5' G B2021 43.782 125.640 105.690 1.00 41.04 O
ATOM 6 C5' G B2021 43.397 125.837 107.062 1.00 39.76 C
ATOM 7 C4' G B2021 41.994 126.384 107.126 1.00 38.34 C
ATOM 8 O4' G B2021 41.968 127.662 106.450 1.00 38.01 O
ATOM 9 C3' G B2021 40.946 125.546 106.418 1.00 36.48 C
ATOM 10 O3' G B2021 40.399 124.570 107.288 1.00 37.33 O
ATOM 11 C2' G B2021 39.910 126.581 106.033 1.00 35.46 C
ATOM 12 O2' G B2021 39.128 126.929 107.147 1.00 33.11 O
ATOM 13 C1' G B2021 40.802 127.763 105.659 1.00 37.38 C
ATOM 14 N9 G B2021 41.230 127.802 104.262 1.00 39.31 N
ATOM 15 C8 G B2021 42.525 127.837 103.809 1.00 38.95 C
ATOM 16 N7 G B2021 42.614 127.898 102.512 1.00 40.38 N
ATOM 17 C5 G B2021 41.299 127.897 102.077 1.00 40.18 C
ATOM 18 C6 G B2021 40.774 127.949 100.768 1.00 41.44 C
ATOM 19 O6 G B2021 41.390 128.007 99.690 1.00 41.07 O
ATOM 20 N1 G B2021 39.384 127.920 100.778 1.00 42.13 N
ATOM 21 C2 G B2021 38.604 127.843 101.906 1.00 41.29 C
ATOM 22 N2 G B2021 37.285 127.797 101.712 1.00 42.29 N
ATOM 23 N3 G B2021 39.083 127.803 103.130 1.00 40.23 N
ATOM 24 C4 G B2021 40.430 127.831 103.143 1.00 39.72 C
ATOM 25 P U B2022 40.213 123.063 106.775 1.00 39.06 P
ATOM 26 OP1 U B2022 39.757 122.283 107.946 1.00 38.05 O
ATOM 27 OP2 U B2022 41.451 122.669 106.057 1.00 35.76 O
ATOM 28 O5' U B2022 39.022 123.134 105.724 1.00 35.85 O
TER
Atoms:
OP1: (27.105,126.711,104.610)
OP2: (28.229,124.641,105.625)
C3': (31.331,125.690,101.818)
C1': (32.946,127.053,102.882)
C5': (29.367,126.980,102.815)
O4': (31.670,127.619,103.095)
C8: (32.895,125.735,105.075)
O2': (33.253,126.532,100.562)
C6: (35.931,126.515,106.660)
C5: (34.761,126.305,105.914)
C4: (34.664,126.970,104.709)
P: (28.333,126.000,105.038)
C4': (30.727,127.036,102.172)
C2': (32.824,125.988,101.789)
C2: (36.620,127.929,104.975)
N1: (36.857,127.350,106.150)
N3: (35.568,127.810,104.177)
N6: (36.176,125.938,107.834)
N7: (33.632,125.530,106.139)
N9: (33.462,126.593,104.167)
O5': (29.333,125.936,103.802)
O3': (30.861,125.276,100.548)
OP2: (28.229,124.641,105.625)
C3': (31.331,125.690,101.818)
C1': (32.946,127.053,102.882)
C5': (29.367,126.980,102.815)
O4': (31.670,127.619,103.095)
C8: (32.895,125.735,105.075)
O2': (33.253,126.532,100.562)
C6: (35.931,126.515,106.660)
C5: (34.761,126.305,105.914)
C4: (34.664,126.970,104.709)
P: (28.333,126.000,105.038)
C4': (30.727,127.036,102.172)
C2': (32.824,125.988,101.789)
C2: (36.620,127.929,104.975)
N1: (36.857,127.350,106.150)
N3: (35.568,127.810,104.177)
N6: (36.176,125.938,107.834)
N7: (33.632,125.530,106.139)
N9: (33.462,126.593,104.167)
O5': (29.333,125.936,103.802)
O3': (30.861,125.276,100.548)
OP1: (45.052,124.543,103.823)
OP2: (46.124,124.989,106.129)
C3': (40.946,125.546,106.418)
C1': (40.802,127.763,105.659)
C5': (43.397,125.837,107.062)
O6: (41.390,128.007,99.690)
O4': (41.968,127.662,106.450)
C8: (42.525,127.837,103.809)
C2: (38.604,127.843,101.906)
C6: (40.774,127.949,100.768)
C5: (41.299,127.897,102.077)
C4: (40.430,127.831,103.143)
P: (44.939,124.618,105.312)
C4': (41.994,126.384,107.126)
C2': (39.910,126.581,106.033)
O2': (39.128,126.929,107.147)
N1: (39.384,127.920,100.778)
N2: (37.285,127.797,101.712)
N3: (39.083,127.803,103.130)
N7: (42.614,127.898,102.512)
N9: (41.230,127.802,104.262)
O5': (43.782,125.640,105.690)
O3': (40.399,124.570,107.288)
OP2: (46.124,124.989,106.129)
C3': (40.946,125.546,106.418)
C1': (40.802,127.763,105.659)
C5': (43.397,125.837,107.062)
O6: (41.390,128.007,99.690)
O4': (41.968,127.662,106.450)
C8: (42.525,127.837,103.809)
C2: (38.604,127.843,101.906)
C6: (40.774,127.949,100.768)
C5: (41.299,127.897,102.077)
C4: (40.430,127.831,103.143)
P: (44.939,124.618,105.312)
C4': (41.994,126.384,107.126)
C2': (39.910,126.581,106.033)
O2': (39.128,126.929,107.147)
N1: (39.384,127.920,100.778)
N2: (37.285,127.797,101.712)
N3: (39.083,127.803,103.130)
N7: (42.614,127.898,102.512)
N9: (41.230,127.802,104.262)
O5': (43.782,125.640,105.690)
O3': (40.399,124.570,107.288)
Image (generated by PyMOL):