ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJ9:01041:01005

Extra

PDB:
ATOM 1 O3' A A1040 37.960 101.760 101.825 1.00 44.71 O
ATOM 2 P A A1041 37.845 101.453 103.394 1.00 43.40 P
ATOM 3 OP1 A A1041 36.441 101.735 103.771 1.00 42.75 O
ATOM 4 OP2 A A1041 38.949 102.105 104.145 1.00 43.80 O
ATOM 5 O5' A A1041 38.066 99.883 103.458 1.00 43.10 O
ATOM 6 C5' A A1041 37.224 99.000 102.708 1.00 41.49 C
ATOM 7 C4' A A1041 38.061 97.976 102.003 1.00 41.35 C
ATOM 8 O4' A A1041 39.020 98.673 101.166 1.00 42.86 O
ATOM 9 C3' A A1041 38.927 97.108 102.900 1.00 41.16 C
ATOM 10 O3' A A1041 38.179 96.020 103.451 1.00 42.13 O
ATOM 11 C2' A A1041 40.021 96.659 101.940 1.00 40.19 C
ATOM 12 O2' A A1041 39.599 95.622 101.091 1.00 38.86 O
ATOM 13 C1' A A1041 40.218 97.916 101.093 1.00 42.51 C
ATOM 14 N9 A A1041 41.338 98.749 101.530 1.00 44.02 N
ATOM 15 C8 A A1041 41.429 99.548 102.646 1.00 45.99 C
ATOM 16 N7 A A1041 42.588 100.151 102.772 1.00 45.77 N
ATOM 17 C5 A A1041 43.305 99.723 101.664 1.00 44.14 C
ATOM 18 C6 A A1041 44.609 99.983 101.234 1.00 44.15 C
ATOM 19 N6 A A1041 45.456 100.776 101.890 1.00 45.16 N
ATOM 20 N1 A A1041 45.024 99.391 100.096 1.00 44.56 N
ATOM 21 C2 A A1041 44.175 98.594 99.442 1.00 43.41 C
ATOM 22 N3 A A1041 42.928 98.268 99.748 1.00 42.33 N
ATOM 23 C4 A A1041 42.547 98.870 100.886 1.00 43.40 C
ATOM 24 P C A1042 38.888 94.972 104.451 1.00 43.58 P
ATOM 25 OP1 C A1042 40.363 95.106 104.353 1.00 45.28 O
ATOM 26 OP2 C A1042 38.264 93.651 104.206 1.00 42.26 O
ATOM 27 O5' C A1042 38.469 95.457 105.911 1.00 43.41 O
TER

ATOM 1 O3' G B1004 52.530 96.502 94.483 1.00 40.71 O
ATOM 2 P G B1005 52.493 95.784 95.934 1.00 41.88 P
ATOM 3 OP1 G B1005 53.719 96.241 96.644 1.00 40.71 O
ATOM 4 OP2 G B1005 52.231 94.323 95.789 1.00 40.57 O
ATOM 5 O5' G B1005 51.210 96.405 96.647 1.00 38.60 O
ATOM 6 C5' G B1005 51.196 97.780 97.047 1.00 37.65 C
ATOM 7 C4' G B1005 49.862 98.143 97.638 1.00 35.50 C
ATOM 8 O4' G B1005 48.836 97.940 96.638 1.00 37.76 O
ATOM 9 C3' G B1005 49.379 97.315 98.814 1.00 34.85 C
ATOM 10 O3' G B1005 49.965 97.744 100.031 1.00 34.87 O
ATOM 11 C2' G B1005 47.886 97.594 98.779 1.00 36.48 C
ATOM 12 O2' G B1005 47.566 98.901 99.224 1.00 35.68 O
ATOM 13 C1' G B1005 47.626 97.546 97.276 1.00 37.23 C
ATOM 14 N9 G B1005 47.260 96.208 96.821 1.00 36.19 N
ATOM 15 C8 G B1005 48.035 95.312 96.126 1.00 36.28 C
ATOM 16 N7 G B1005 47.418 94.192 95.871 1.00 35.14 N
ATOM 17 C5 G B1005 46.160 94.362 96.429 1.00 36.12 C
ATOM 18 C6 G B1005 45.051 93.487 96.472 1.00 36.37 C
ATOM 19 O6 G B1005 44.938 92.355 95.985 1.00 38.61 O
ATOM 20 N1 G B1005 43.989 94.050 97.162 1.00 36.10 N
ATOM 21 C2 G B1005 43.985 95.292 97.724 1.00 36.92 C
ATOM 22 N2 G B1005 42.870 95.642 98.366 1.00 37.93 N
ATOM 23 N3 G B1005 45.000 96.128 97.670 1.00 37.69 N
ATOM 24 C4 G B1005 46.050 95.599 97.018 1.00 36.48 C
ATOM 25 P U B1006 50.074 96.727 101.272 1.00 33.30 P
ATOM 26 OP1 U B1006 50.800 97.440 102.343 1.00 32.04 O
ATOM 27 OP2 U B1006 50.593 95.448 100.770 1.00 33.95 O
ATOM 28 O5' U B1006 48.572 96.524 101.748 1.00 30.38 O
TER

Atoms:
OP1: (36.441,101.735,103.771)
OP2: (38.949,102.105,104.145)
C3': (38.927,97.108,102.900)
C1': (40.218,97.916,101.093)
C5': (37.224,99.000,102.708)
O4': (39.020,98.673,101.166)
C8: (41.429,99.548,102.646)
O2': (39.599,95.622,101.091)
C6: (44.609,99.983,101.234)
C5: (43.305,99.723,101.664)
C4: (42.547,98.870,100.886)
P: (37.845,101.453,103.394)
C4': (38.061,97.976,102.003)
C2': (40.021,96.659,101.940)
C2: (44.175,98.594,99.442)
N1: (45.024,99.391,100.096)
N3: (42.928,98.268,99.748)
N6: (45.456,100.776,101.890)
N7: (42.588,100.151,102.772)
N9: (41.338,98.749,101.530)
O5': (38.066,99.883,103.458)
O3': (38.179,96.020,103.451)
OP1: (53.719,96.241,96.644)
OP2: (52.231,94.323,95.789)
C3': (49.379,97.315,98.814)
C1': (47.626,97.546,97.276)
C5': (51.196,97.780,97.047)
O6: (44.938,92.355,95.985)
O4': (48.836,97.940,96.638)
C8: (48.035,95.312,96.126)
C2: (43.985,95.292,97.724)
C6: (45.051,93.487,96.472)
C5: (46.160,94.362,96.429)
C4: (46.050,95.599,97.018)
P: (52.493,95.784,95.934)
C4': (49.862,98.143,97.638)
C2': (47.886,97.594,98.779)
O2': (47.566,98.901,99.224)
N1: (43.989,94.050,97.162)
N2: (42.870,95.642,98.366)
N3: (45.000,96.128,97.670)
N7: (47.418,94.192,95.871)
N9: (47.260,96.208,96.821)
O5': (51.210,96.405,96.647)
O3': (49.965,97.744,100.031)
Image (generated by PyMOL):
PyMOL image
show in jmol