Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2V:A58:A12
Extra
PDB:
ATOM 1 O3' A A 57 6.110 26.859 -23.169 1.00 30.50 O
ATOM 2 P U A 58 6.527 25.744 -22.099 1.00 33.04 P
ATOM 3 OP1 U A 58 6.759 26.441 -20.813 1.00 31.48 O
ATOM 4 OP2 U A 58 7.593 24.903 -22.688 1.00 33.47 O
ATOM 5 O5' U A 58 5.200 24.858 -21.974 1.00 32.57 O
ATOM 6 C5' U A 58 4.061 25.364 -21.291 1.00 31.00 C
ATOM 7 C4' U A 58 2.832 24.530 -21.607 1.00 28.48 C
ATOM 8 O4' U A 58 2.604 24.528 -23.036 1.00 27.63 O
ATOM 9 C3' U A 58 2.924 23.046 -21.286 1.00 27.73 C
ATOM 10 O3' U A 58 2.712 22.801 -19.910 1.00 29.33 O
ATOM 11 C2' U A 58 1.752 22.525 -22.104 1.00 25.96 C
ATOM 12 O2' U A 58 0.510 22.758 -21.474 1.00 27.56 O
ATOM 13 C1' U A 58 1.859 23.375 -23.370 1.00 27.84 C
ATOM 14 N1 U A 58 2.528 22.635 -24.470 1.00 30.17 N
ATOM 15 C2 U A 58 1.731 21.998 -25.390 1.00 30.11 C
ATOM 16 O2 U A 58 0.514 22.032 -25.335 1.00 30.31 O
ATOM 17 N3 U A 58 2.409 21.325 -26.375 1.00 35.27 N
ATOM 18 C4 U A 58 3.782 21.228 -26.520 1.00 32.30 C
ATOM 19 O4 U A 58 4.249 20.587 -27.456 1.00 35.71 O
ATOM 20 C5 U A 58 4.547 21.918 -25.514 1.00 32.00 C
ATOM 21 C6 U A 58 3.905 22.580 -24.544 1.00 29.56 C
ATOM 22 P G A 59 3.629 21.737 -19.141 1.00 30.04 P
ATOM 23 OP1 G A 59 3.337 21.890 -17.700 1.00 27.90 O
ATOM 24 OP2 G A 59 5.018 21.905 -19.619 1.00 29.39 O
ATOM 25 O5' G A 59 3.153 20.301 -19.663 1.00 27.47 O
TER
ATOM 1 O3' U B 11 -9.219 24.057 -22.009 1.00 34.50 O
ATOM 2 P G B 12 -9.258 25.495 -21.317 1.00 41.34 P
ATOM 3 OP1 G B 12 -10.285 25.513 -20.251 1.00 39.34 O
ATOM 4 OP2 G B 12 -9.261 26.499 -22.403 1.00 40.42 O
ATOM 5 O5' G B 12 -7.834 25.506 -20.611 1.00 38.86 O
ATOM 6 C5' G B 12 -6.748 25.654 -21.472 1.00 32.18 C
ATOM 7 C4' G B 12 -5.587 24.777 -21.073 1.00 34.06 C
ATOM 8 O4' G B 12 -5.783 23.418 -21.540 1.00 28.59 O
ATOM 9 C3' G B 12 -4.333 25.282 -21.751 1.00 28.10 C
ATOM 10 O3' G B 12 -3.645 26.097 -20.827 1.00 25.65 O
ATOM 11 C2' G B 12 -3.585 24.017 -22.150 1.00 29.49 C
ATOM 12 O2' G B 12 -2.801 23.488 -21.100 1.00 27.87 O
ATOM 13 C1' G B 12 -4.752 23.083 -22.451 1.00 32.57 C
ATOM 14 N9 G B 12 -5.303 23.171 -23.804 1.00 30.55 N
ATOM 15 C8 G B 12 -6.578 23.558 -24.145 1.00 28.56 C
ATOM 16 N7 G B 12 -6.804 23.529 -25.428 1.00 29.36 N
ATOM 17 C5 G B 12 -5.604 23.097 -25.976 1.00 30.40 C
ATOM 18 C6 G B 12 -5.251 22.874 -27.327 1.00 30.01 C
ATOM 19 O6 G B 12 -5.957 23.021 -28.333 1.00 29.44 O
ATOM 20 N1 G B 12 -3.936 22.436 -27.455 1.00 29.38 N
ATOM 21 C2 G B 12 -3.074 22.236 -26.403 1.00 30.69 C
ATOM 22 N2 G B 12 -1.844 21.808 -26.720 1.00 27.21 N
ATOM 23 N3 G B 12 -3.392 22.444 -25.130 1.00 26.58 N
ATOM 24 C4 G B 12 -4.670 22.869 -24.991 1.00 27.81 C
ATOM 25 P C B 13 -3.339 27.588 -21.296 1.00 30.58 P
ATOM 26 OP1 C B 13 -2.737 28.315 -20.158 1.00 34.27 O
ATOM 27 OP2 C B 13 -4.549 28.108 -21.972 1.00 29.17 O
ATOM 28 O5' C B 13 -2.214 27.357 -22.408 1.00 30.92 O
TER
ATOM 2 P U A 58 6.527 25.744 -22.099 1.00 33.04 P
ATOM 3 OP1 U A 58 6.759 26.441 -20.813 1.00 31.48 O
ATOM 4 OP2 U A 58 7.593 24.903 -22.688 1.00 33.47 O
ATOM 5 O5' U A 58 5.200 24.858 -21.974 1.00 32.57 O
ATOM 6 C5' U A 58 4.061 25.364 -21.291 1.00 31.00 C
ATOM 7 C4' U A 58 2.832 24.530 -21.607 1.00 28.48 C
ATOM 8 O4' U A 58 2.604 24.528 -23.036 1.00 27.63 O
ATOM 9 C3' U A 58 2.924 23.046 -21.286 1.00 27.73 C
ATOM 10 O3' U A 58 2.712 22.801 -19.910 1.00 29.33 O
ATOM 11 C2' U A 58 1.752 22.525 -22.104 1.00 25.96 C
ATOM 12 O2' U A 58 0.510 22.758 -21.474 1.00 27.56 O
ATOM 13 C1' U A 58 1.859 23.375 -23.370 1.00 27.84 C
ATOM 14 N1 U A 58 2.528 22.635 -24.470 1.00 30.17 N
ATOM 15 C2 U A 58 1.731 21.998 -25.390 1.00 30.11 C
ATOM 16 O2 U A 58 0.514 22.032 -25.335 1.00 30.31 O
ATOM 17 N3 U A 58 2.409 21.325 -26.375 1.00 35.27 N
ATOM 18 C4 U A 58 3.782 21.228 -26.520 1.00 32.30 C
ATOM 19 O4 U A 58 4.249 20.587 -27.456 1.00 35.71 O
ATOM 20 C5 U A 58 4.547 21.918 -25.514 1.00 32.00 C
ATOM 21 C6 U A 58 3.905 22.580 -24.544 1.00 29.56 C
ATOM 22 P G A 59 3.629 21.737 -19.141 1.00 30.04 P
ATOM 23 OP1 G A 59 3.337 21.890 -17.700 1.00 27.90 O
ATOM 24 OP2 G A 59 5.018 21.905 -19.619 1.00 29.39 O
ATOM 25 O5' G A 59 3.153 20.301 -19.663 1.00 27.47 O
TER
ATOM 1 O3' U B 11 -9.219 24.057 -22.009 1.00 34.50 O
ATOM 2 P G B 12 -9.258 25.495 -21.317 1.00 41.34 P
ATOM 3 OP1 G B 12 -10.285 25.513 -20.251 1.00 39.34 O
ATOM 4 OP2 G B 12 -9.261 26.499 -22.403 1.00 40.42 O
ATOM 5 O5' G B 12 -7.834 25.506 -20.611 1.00 38.86 O
ATOM 6 C5' G B 12 -6.748 25.654 -21.472 1.00 32.18 C
ATOM 7 C4' G B 12 -5.587 24.777 -21.073 1.00 34.06 C
ATOM 8 O4' G B 12 -5.783 23.418 -21.540 1.00 28.59 O
ATOM 9 C3' G B 12 -4.333 25.282 -21.751 1.00 28.10 C
ATOM 10 O3' G B 12 -3.645 26.097 -20.827 1.00 25.65 O
ATOM 11 C2' G B 12 -3.585 24.017 -22.150 1.00 29.49 C
ATOM 12 O2' G B 12 -2.801 23.488 -21.100 1.00 27.87 O
ATOM 13 C1' G B 12 -4.752 23.083 -22.451 1.00 32.57 C
ATOM 14 N9 G B 12 -5.303 23.171 -23.804 1.00 30.55 N
ATOM 15 C8 G B 12 -6.578 23.558 -24.145 1.00 28.56 C
ATOM 16 N7 G B 12 -6.804 23.529 -25.428 1.00 29.36 N
ATOM 17 C5 G B 12 -5.604 23.097 -25.976 1.00 30.40 C
ATOM 18 C6 G B 12 -5.251 22.874 -27.327 1.00 30.01 C
ATOM 19 O6 G B 12 -5.957 23.021 -28.333 1.00 29.44 O
ATOM 20 N1 G B 12 -3.936 22.436 -27.455 1.00 29.38 N
ATOM 21 C2 G B 12 -3.074 22.236 -26.403 1.00 30.69 C
ATOM 22 N2 G B 12 -1.844 21.808 -26.720 1.00 27.21 N
ATOM 23 N3 G B 12 -3.392 22.444 -25.130 1.00 26.58 N
ATOM 24 C4 G B 12 -4.670 22.869 -24.991 1.00 27.81 C
ATOM 25 P C B 13 -3.339 27.588 -21.296 1.00 30.58 P
ATOM 26 OP1 C B 13 -2.737 28.315 -20.158 1.00 34.27 O
ATOM 27 OP2 C B 13 -4.549 28.108 -21.972 1.00 29.17 O
ATOM 28 O5' C B 13 -2.214 27.357 -22.408 1.00 30.92 O
TER
Atoms:
C4: (3.782,21.228,-26.520)
N3: (2.409,21.325,-26.375)
OP1: (6.759,26.441,-20.813)
OP2: (7.593,24.903,-22.688)
C2: (1.731,21.998,-25.390)
C1': (1.859,23.375,-23.370)
C3': (2.924,23.046,-21.286)
O5': (5.200,24.858,-21.974)
O4': (2.604,24.528,-23.036)
C5': (4.061,25.364,-21.291)
P: (6.527,25.744,-22.099)
C4': (2.832,24.530,-21.607)
C2': (1.752,22.525,-22.104)
O2': (0.510,22.758,-21.474)
N1: (2.528,22.635,-24.470)
O4: (4.249,20.587,-27.456)
O2: (0.514,22.032,-25.335)
C6: (3.905,22.580,-24.544)
C5: (4.547,21.918,-25.514)
O3': (2.712,22.801,-19.910)
N3: (2.409,21.325,-26.375)
OP1: (6.759,26.441,-20.813)
OP2: (7.593,24.903,-22.688)
C2: (1.731,21.998,-25.390)
C1': (1.859,23.375,-23.370)
C3': (2.924,23.046,-21.286)
O5': (5.200,24.858,-21.974)
O4': (2.604,24.528,-23.036)
C5': (4.061,25.364,-21.291)
P: (6.527,25.744,-22.099)
C4': (2.832,24.530,-21.607)
C2': (1.752,22.525,-22.104)
O2': (0.510,22.758,-21.474)
N1: (2.528,22.635,-24.470)
O4: (4.249,20.587,-27.456)
O2: (0.514,22.032,-25.335)
C6: (3.905,22.580,-24.544)
C5: (4.547,21.918,-25.514)
O3': (2.712,22.801,-19.910)
OP1: (-10.285,25.513,-20.251)
OP2: (-9.261,26.499,-22.403)
C3': (-4.333,25.282,-21.751)
C1': (-4.752,23.083,-22.451)
C5': (-6.748,25.654,-21.472)
O6: (-5.957,23.021,-28.333)
O4': (-5.783,23.418,-21.540)
C8: (-6.578,23.558,-24.145)
C2: (-3.074,22.236,-26.403)
C6: (-5.251,22.874,-27.327)
C5: (-5.604,23.097,-25.976)
C4: (-4.670,22.869,-24.991)
P: (-9.258,25.495,-21.317)
C4': (-5.587,24.777,-21.073)
C2': (-3.585,24.017,-22.150)
O2': (-2.801,23.488,-21.100)
N1: (-3.936,22.436,-27.455)
N2: (-1.844,21.808,-26.720)
N3: (-3.392,22.444,-25.130)
N7: (-6.804,23.529,-25.428)
N9: (-5.303,23.171,-23.804)
O5': (-7.834,25.506,-20.611)
O3': (-3.645,26.097,-20.827)
OP2: (-9.261,26.499,-22.403)
C3': (-4.333,25.282,-21.751)
C1': (-4.752,23.083,-22.451)
C5': (-6.748,25.654,-21.472)
O6: (-5.957,23.021,-28.333)
O4': (-5.783,23.418,-21.540)
C8: (-6.578,23.558,-24.145)
C2: (-3.074,22.236,-26.403)
C6: (-5.251,22.874,-27.327)
C5: (-5.604,23.097,-25.976)
C4: (-4.670,22.869,-24.991)
P: (-9.258,25.495,-21.317)
C4': (-5.587,24.777,-21.073)
C2': (-3.585,24.017,-22.150)
O2': (-2.801,23.488,-21.100)
N1: (-3.936,22.436,-27.455)
N2: (-1.844,21.808,-26.720)
N3: (-3.392,22.444,-25.130)
N7: (-6.804,23.529,-25.428)
N9: (-5.303,23.171,-23.804)
O5': (-7.834,25.506,-20.611)
O3': (-3.645,26.097,-20.827)
Image (generated by PyMOL):