Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2V:B58:B12
Extra
PDB:
ATOM 1 O3' A A 57 4.352 29.783 -0.871 1.00 34.34 O
ATOM 2 P U A 58 4.810 30.950 -1.869 1.00 36.52 P
ATOM 3 OP1 U A 58 5.320 30.292 -3.090 1.00 30.07 O
ATOM 4 OP2 U A 58 5.664 31.900 -1.122 1.00 36.79 O
ATOM 5 O5' U A 58 3.436 31.687 -2.224 1.00 32.09 O
ATOM 6 C5' U A 58 2.452 31.031 -3.017 1.00 33.94 C
ATOM 7 C4' U A 58 1.110 31.731 -2.901 1.00 29.12 C
ATOM 8 O4' U A 58 0.643 31.662 -1.531 1.00 28.75 O
ATOM 9 C3' U A 58 1.110 33.226 -3.178 1.00 28.03 C
ATOM 10 O3' U A 58 1.126 33.504 -4.570 1.00 30.02 O
ATOM 11 C2' U A 58 -0.234 33.600 -2.566 1.00 30.94 C
ATOM 12 O2' U A 58 -1.320 33.226 -3.388 1.00 30.35 O
ATOM 13 C1' U A 58 -0.232 32.750 -1.297 1.00 30.02 C
ATOM 14 N1 U A 58 0.207 33.524 -0.103 1.00 30.32 N
ATOM 15 C2 U A 58 -0.763 34.098 0.682 1.00 29.10 C
ATOM 16 O2 U A 58 -1.951 33.989 0.440 1.00 30.80 O
ATOM 17 N3 U A 58 -0.296 34.799 1.764 1.00 32.54 N
ATOM 18 C4 U A 58 1.023 34.981 2.129 1.00 31.49 C
ATOM 19 O4 U A 58 1.287 35.641 3.130 1.00 35.38 O
ATOM 20 C5 U A 58 1.981 34.353 1.257 1.00 31.44 C
ATOM 21 C6 U A 58 1.547 33.663 0.194 1.00 31.55 C
ATOM 22 P G A 59 2.050 34.687 -5.129 1.00 32.22 P
ATOM 23 OP1 G A 59 1.973 34.650 -6.604 1.00 35.10 O
ATOM 24 OP2 G A 59 3.371 34.612 -4.463 1.00 29.02 O
ATOM 25 O5' G A 59 1.337 36.011 -4.596 1.00 27.21 O
TER
ATOM 1 O3' U B 11 -10.837 31.413 -4.009 1.00 33.49 O
ATOM 2 P G B 12 -10.588 29.906 -4.478 1.00 39.33 P
ATOM 3 OP1 G B 12 -11.033 29.784 -5.884 1.00 30.38 O
ATOM 4 OP2 G B 12 -11.125 28.994 -3.443 1.00 36.76 O
ATOM 5 O5' G B 12 -8.990 29.825 -4.451 1.00 31.83 O
ATOM 6 C5' G B 12 -8.248 30.435 -5.496 1.00 29.29 C
ATOM 7 C4' G B 12 -7.070 31.206 -4.931 1.00 26.91 C
ATOM 8 O4' G B 12 -7.549 32.337 -4.162 1.00 28.75 O
ATOM 9 C3' G B 12 -6.211 30.436 -3.939 1.00 29.66 C
ATOM 10 O3' G B 12 -5.294 29.596 -4.622 1.00 26.83 O
ATOM 11 C2' G B 12 -5.501 31.595 -3.255 1.00 29.79 C
ATOM 12 O2' G B 12 -4.513 32.171 -4.084 1.00 25.30 O
ATOM 13 C1' G B 12 -6.655 32.575 -3.089 1.00 30.18 C
ATOM 14 N9 G B 12 -7.380 32.427 -1.829 1.00 32.94 N
ATOM 15 C8 G B 12 -8.672 31.989 -1.665 1.00 29.29 C
ATOM 16 N7 G B 12 -9.055 31.968 -0.420 1.00 32.24 N
ATOM 17 C5 G B 12 -7.949 32.423 0.287 1.00 31.41 C
ATOM 18 C6 G B 12 -7.770 32.610 1.676 1.00 32.08 C
ATOM 19 O6 G B 12 -8.588 32.406 2.584 1.00 33.69 O
ATOM 20 N1 G B 12 -6.495 33.084 1.976 1.00 32.69 N
ATOM 21 C2 G B 12 -5.515 33.346 1.048 1.00 34.20 C
ATOM 22 N2 G B 12 -4.345 33.805 1.524 1.00 27.82 N
ATOM 23 N3 G B 12 -5.672 33.172 -0.258 1.00 32.02 N
ATOM 24 C4 G B 12 -6.908 32.710 -0.565 1.00 32.21 C
ATOM 25 P C B 13 -4.901 28.181 -3.993 1.00 30.69 P
ATOM 26 OP1 C B 13 -4.080 27.456 -4.988 1.00 28.72 O
ATOM 27 OP2 C B 13 -6.134 27.568 -3.451 1.00 30.74 O
ATOM 28 O5' C B 13 -3.949 28.577 -2.771 1.00 29.55 O
TER
ATOM 2 P U A 58 4.810 30.950 -1.869 1.00 36.52 P
ATOM 3 OP1 U A 58 5.320 30.292 -3.090 1.00 30.07 O
ATOM 4 OP2 U A 58 5.664 31.900 -1.122 1.00 36.79 O
ATOM 5 O5' U A 58 3.436 31.687 -2.224 1.00 32.09 O
ATOM 6 C5' U A 58 2.452 31.031 -3.017 1.00 33.94 C
ATOM 7 C4' U A 58 1.110 31.731 -2.901 1.00 29.12 C
ATOM 8 O4' U A 58 0.643 31.662 -1.531 1.00 28.75 O
ATOM 9 C3' U A 58 1.110 33.226 -3.178 1.00 28.03 C
ATOM 10 O3' U A 58 1.126 33.504 -4.570 1.00 30.02 O
ATOM 11 C2' U A 58 -0.234 33.600 -2.566 1.00 30.94 C
ATOM 12 O2' U A 58 -1.320 33.226 -3.388 1.00 30.35 O
ATOM 13 C1' U A 58 -0.232 32.750 -1.297 1.00 30.02 C
ATOM 14 N1 U A 58 0.207 33.524 -0.103 1.00 30.32 N
ATOM 15 C2 U A 58 -0.763 34.098 0.682 1.00 29.10 C
ATOM 16 O2 U A 58 -1.951 33.989 0.440 1.00 30.80 O
ATOM 17 N3 U A 58 -0.296 34.799 1.764 1.00 32.54 N
ATOM 18 C4 U A 58 1.023 34.981 2.129 1.00 31.49 C
ATOM 19 O4 U A 58 1.287 35.641 3.130 1.00 35.38 O
ATOM 20 C5 U A 58 1.981 34.353 1.257 1.00 31.44 C
ATOM 21 C6 U A 58 1.547 33.663 0.194 1.00 31.55 C
ATOM 22 P G A 59 2.050 34.687 -5.129 1.00 32.22 P
ATOM 23 OP1 G A 59 1.973 34.650 -6.604 1.00 35.10 O
ATOM 24 OP2 G A 59 3.371 34.612 -4.463 1.00 29.02 O
ATOM 25 O5' G A 59 1.337 36.011 -4.596 1.00 27.21 O
TER
ATOM 1 O3' U B 11 -10.837 31.413 -4.009 1.00 33.49 O
ATOM 2 P G B 12 -10.588 29.906 -4.478 1.00 39.33 P
ATOM 3 OP1 G B 12 -11.033 29.784 -5.884 1.00 30.38 O
ATOM 4 OP2 G B 12 -11.125 28.994 -3.443 1.00 36.76 O
ATOM 5 O5' G B 12 -8.990 29.825 -4.451 1.00 31.83 O
ATOM 6 C5' G B 12 -8.248 30.435 -5.496 1.00 29.29 C
ATOM 7 C4' G B 12 -7.070 31.206 -4.931 1.00 26.91 C
ATOM 8 O4' G B 12 -7.549 32.337 -4.162 1.00 28.75 O
ATOM 9 C3' G B 12 -6.211 30.436 -3.939 1.00 29.66 C
ATOM 10 O3' G B 12 -5.294 29.596 -4.622 1.00 26.83 O
ATOM 11 C2' G B 12 -5.501 31.595 -3.255 1.00 29.79 C
ATOM 12 O2' G B 12 -4.513 32.171 -4.084 1.00 25.30 O
ATOM 13 C1' G B 12 -6.655 32.575 -3.089 1.00 30.18 C
ATOM 14 N9 G B 12 -7.380 32.427 -1.829 1.00 32.94 N
ATOM 15 C8 G B 12 -8.672 31.989 -1.665 1.00 29.29 C
ATOM 16 N7 G B 12 -9.055 31.968 -0.420 1.00 32.24 N
ATOM 17 C5 G B 12 -7.949 32.423 0.287 1.00 31.41 C
ATOM 18 C6 G B 12 -7.770 32.610 1.676 1.00 32.08 C
ATOM 19 O6 G B 12 -8.588 32.406 2.584 1.00 33.69 O
ATOM 20 N1 G B 12 -6.495 33.084 1.976 1.00 32.69 N
ATOM 21 C2 G B 12 -5.515 33.346 1.048 1.00 34.20 C
ATOM 22 N2 G B 12 -4.345 33.805 1.524 1.00 27.82 N
ATOM 23 N3 G B 12 -5.672 33.172 -0.258 1.00 32.02 N
ATOM 24 C4 G B 12 -6.908 32.710 -0.565 1.00 32.21 C
ATOM 25 P C B 13 -4.901 28.181 -3.993 1.00 30.69 P
ATOM 26 OP1 C B 13 -4.080 27.456 -4.988 1.00 28.72 O
ATOM 27 OP2 C B 13 -6.134 27.568 -3.451 1.00 30.74 O
ATOM 28 O5' C B 13 -3.949 28.577 -2.771 1.00 29.55 O
TER
Atoms:
C4: (1.023,34.981,2.129)
N3: (-0.296,34.799,1.764)
OP1: (5.320,30.292,-3.090)
OP2: (5.664,31.900,-1.122)
C2: (-0.763,34.098,0.682)
C1': (-0.232,32.750,-1.297)
C3': (1.110,33.226,-3.178)
O5': (3.436,31.687,-2.224)
O4': (0.643,31.662,-1.531)
C5': (2.452,31.031,-3.017)
P: (4.810,30.950,-1.869)
C4': (1.110,31.731,-2.901)
C2': (-0.234,33.600,-2.566)
O2': (-1.320,33.226,-3.388)
N1: (0.207,33.524,-0.103)
O4: (1.287,35.641,3.130)
O2: (-1.951,33.989,0.440)
C6: (1.547,33.663,0.194)
C5: (1.981,34.353,1.257)
O3': (1.126,33.504,-4.570)
N3: (-0.296,34.799,1.764)
OP1: (5.320,30.292,-3.090)
OP2: (5.664,31.900,-1.122)
C2: (-0.763,34.098,0.682)
C1': (-0.232,32.750,-1.297)
C3': (1.110,33.226,-3.178)
O5': (3.436,31.687,-2.224)
O4': (0.643,31.662,-1.531)
C5': (2.452,31.031,-3.017)
P: (4.810,30.950,-1.869)
C4': (1.110,31.731,-2.901)
C2': (-0.234,33.600,-2.566)
O2': (-1.320,33.226,-3.388)
N1: (0.207,33.524,-0.103)
O4: (1.287,35.641,3.130)
O2: (-1.951,33.989,0.440)
C6: (1.547,33.663,0.194)
C5: (1.981,34.353,1.257)
O3': (1.126,33.504,-4.570)
OP1: (-11.033,29.784,-5.884)
OP2: (-11.125,28.994,-3.443)
C3': (-6.211,30.436,-3.939)
C1': (-6.655,32.575,-3.089)
C5': (-8.248,30.435,-5.496)
O6: (-8.588,32.406,2.584)
O4': (-7.549,32.337,-4.162)
C8: (-8.672,31.989,-1.665)
C2: (-5.515,33.346,1.048)
C6: (-7.770,32.610,1.676)
C5: (-7.949,32.423,0.287)
C4: (-6.908,32.710,-0.565)
P: (-10.588,29.906,-4.478)
C4': (-7.070,31.206,-4.931)
C2': (-5.501,31.595,-3.255)
O2': (-4.513,32.171,-4.084)
N1: (-6.495,33.084,1.976)
N2: (-4.345,33.805,1.524)
N3: (-5.672,33.172,-0.258)
N7: (-9.055,31.968,-0.420)
N9: (-7.380,32.427,-1.829)
O5': (-8.990,29.825,-4.451)
O3': (-5.294,29.596,-4.622)
OP2: (-11.125,28.994,-3.443)
C3': (-6.211,30.436,-3.939)
C1': (-6.655,32.575,-3.089)
C5': (-8.248,30.435,-5.496)
O6: (-8.588,32.406,2.584)
O4': (-7.549,32.337,-4.162)
C8: (-8.672,31.989,-1.665)
C2: (-5.515,33.346,1.048)
C6: (-7.770,32.610,1.676)
C5: (-7.949,32.423,0.287)
C4: (-6.908,32.710,-0.565)
P: (-10.588,29.906,-4.478)
C4': (-7.070,31.206,-4.931)
C2': (-5.501,31.595,-3.255)
O2': (-4.513,32.171,-4.084)
N1: (-6.495,33.084,1.976)
N2: (-4.345,33.805,1.524)
N3: (-5.672,33.172,-0.258)
N7: (-9.055,31.968,-0.420)
N9: (-7.380,32.427,-1.829)
O5': (-8.990,29.825,-4.451)
O3': (-5.294,29.596,-4.622)
Image (generated by PyMOL):