Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2X:A58:A12
Extra
PDB:
ATOM 1 O3' A A 57 6.088 -28.576 4.333 1.00 25.52 O
ATOM 2 P U A 58 6.550 -29.681 5.400 1.00 26.34 P
ATOM 3 OP1 U A 58 6.882 -28.960 6.657 1.00 25.72 O
ATOM 4 OP2 U A 58 7.580 -30.551 4.763 1.00 26.58 O
ATOM 5 O5' U A 58 5.242 -30.574 5.612 1.00 26.16 O
ATOM 6 C5' U A 58 4.141 -30.089 6.405 1.00 24.93 C
ATOM 7 C4' U A 58 2.875 -30.867 6.110 1.00 24.67 C
ATOM 8 O4' U A 58 2.586 -30.826 4.689 1.00 23.67 O
ATOM 9 C3' U A 58 2.838 -32.356 6.424 1.00 24.72 C
ATOM 10 O3' U A 58 2.575 -32.626 7.786 1.00 25.23 O
ATOM 11 C2' U A 58 1.668 -32.834 5.578 1.00 25.16 C
ATOM 12 O2' U A 58 0.420 -32.641 6.216 1.00 26.24 O
ATOM 13 C1' U A 58 1.775 -31.934 4.347 1.00 24.31 C
ATOM 14 N1 U A 58 2.382 -32.670 3.231 1.00 23.79 N
ATOM 15 C2 U A 58 1.525 -33.343 2.375 1.00 24.11 C
ATOM 16 O2 U A 58 0.309 -33.300 2.479 1.00 24.45 O
ATOM 17 N3 U A 58 2.142 -34.078 1.395 1.00 24.73 N
ATOM 18 C4 U A 58 3.492 -34.211 1.186 1.00 23.57 C
ATOM 19 O4 U A 58 3.891 -35.006 0.339 1.00 23.85 O
ATOM 20 C5 U A 58 4.309 -33.462 2.086 1.00 24.08 C
ATOM 21 C6 U A 58 3.741 -32.729 3.051 1.00 24.44 C
ATOM 22 P G A 59 3.528 -33.632 8.598 1.00 26.86 P
ATOM 23 OP1 G A 59 3.268 -33.381 10.037 1.00 26.96 O
ATOM 24 OP2 G A 59 4.918 -33.555 8.080 1.00 25.88 O
ATOM 25 O5' G A 59 2.998 -35.086 8.241 1.00 27.88 O
TER
ATOM 1 O3' U B 11 -9.471 -31.361 5.678 1.00 23.94 O
ATOM 2 P G B 12 -9.221 -29.998 6.470 1.00 23.55 P
ATOM 3 OP1 G B 12 -10.364 -29.699 7.368 1.00 24.05 O
ATOM 4 OP2 G B 12 -8.812 -29.007 5.450 1.00 23.24 O
ATOM 5 O5' G B 12 -7.965 -30.354 7.366 1.00 22.71 O
ATOM 6 C5' G B 12 -6.729 -29.725 7.107 1.00 22.42 C
ATOM 7 C4' G B 12 -5.630 -30.738 6.959 1.00 21.97 C
ATOM 8 O4' G B 12 -6.047 -31.918 6.233 1.00 21.98 O
ATOM 9 C3' G B 12 -4.529 -30.152 6.121 1.00 21.66 C
ATOM 10 O3' G B 12 -3.750 -29.328 6.936 1.00 21.25 O
ATOM 11 C2' G B 12 -3.838 -31.372 5.548 1.00 20.80 C
ATOM 12 O2' G B 12 -2.972 -31.940 6.502 1.00 20.71 O
ATOM 13 C1' G B 12 -5.025 -32.307 5.324 1.00 21.52 C
ATOM 14 N9 G B 12 -5.579 -32.248 3.973 1.00 22.07 N
ATOM 15 C8 G B 12 -6.864 -31.893 3.636 1.00 23.64 C
ATOM 16 N7 G B 12 -7.091 -31.928 2.352 1.00 24.25 N
ATOM 17 C5 G B 12 -5.883 -32.328 1.802 1.00 24.00 C
ATOM 18 C6 G B 12 -5.525 -32.538 0.450 1.00 24.51 C
ATOM 19 O6 G B 12 -6.230 -32.404 -0.563 1.00 25.49 O
ATOM 20 N1 G B 12 -4.202 -32.944 0.330 1.00 22.87 N
ATOM 21 C2 G B 12 -3.337 -33.121 1.374 1.00 23.52 C
ATOM 22 N2 G B 12 -2.103 -33.524 1.050 1.00 23.07 N
ATOM 23 N3 G B 12 -3.655 -32.923 2.644 1.00 24.10 N
ATOM 24 C4 G B 12 -4.938 -32.532 2.785 1.00 23.29 C
ATOM 25 P C B 13 -3.502 -27.827 6.479 1.00 22.40 P
ATOM 26 OP1 C B 13 -2.942 -27.080 7.634 1.00 22.41 O
ATOM 27 OP2 C B 13 -4.751 -27.345 5.824 1.00 20.68 O
ATOM 28 O5' C B 13 -2.374 -28.005 5.366 1.00 22.62 O
TER
ATOM 2 P U A 58 6.550 -29.681 5.400 1.00 26.34 P
ATOM 3 OP1 U A 58 6.882 -28.960 6.657 1.00 25.72 O
ATOM 4 OP2 U A 58 7.580 -30.551 4.763 1.00 26.58 O
ATOM 5 O5' U A 58 5.242 -30.574 5.612 1.00 26.16 O
ATOM 6 C5' U A 58 4.141 -30.089 6.405 1.00 24.93 C
ATOM 7 C4' U A 58 2.875 -30.867 6.110 1.00 24.67 C
ATOM 8 O4' U A 58 2.586 -30.826 4.689 1.00 23.67 O
ATOM 9 C3' U A 58 2.838 -32.356 6.424 1.00 24.72 C
ATOM 10 O3' U A 58 2.575 -32.626 7.786 1.00 25.23 O
ATOM 11 C2' U A 58 1.668 -32.834 5.578 1.00 25.16 C
ATOM 12 O2' U A 58 0.420 -32.641 6.216 1.00 26.24 O
ATOM 13 C1' U A 58 1.775 -31.934 4.347 1.00 24.31 C
ATOM 14 N1 U A 58 2.382 -32.670 3.231 1.00 23.79 N
ATOM 15 C2 U A 58 1.525 -33.343 2.375 1.00 24.11 C
ATOM 16 O2 U A 58 0.309 -33.300 2.479 1.00 24.45 O
ATOM 17 N3 U A 58 2.142 -34.078 1.395 1.00 24.73 N
ATOM 18 C4 U A 58 3.492 -34.211 1.186 1.00 23.57 C
ATOM 19 O4 U A 58 3.891 -35.006 0.339 1.00 23.85 O
ATOM 20 C5 U A 58 4.309 -33.462 2.086 1.00 24.08 C
ATOM 21 C6 U A 58 3.741 -32.729 3.051 1.00 24.44 C
ATOM 22 P G A 59 3.528 -33.632 8.598 1.00 26.86 P
ATOM 23 OP1 G A 59 3.268 -33.381 10.037 1.00 26.96 O
ATOM 24 OP2 G A 59 4.918 -33.555 8.080 1.00 25.88 O
ATOM 25 O5' G A 59 2.998 -35.086 8.241 1.00 27.88 O
TER
ATOM 1 O3' U B 11 -9.471 -31.361 5.678 1.00 23.94 O
ATOM 2 P G B 12 -9.221 -29.998 6.470 1.00 23.55 P
ATOM 3 OP1 G B 12 -10.364 -29.699 7.368 1.00 24.05 O
ATOM 4 OP2 G B 12 -8.812 -29.007 5.450 1.00 23.24 O
ATOM 5 O5' G B 12 -7.965 -30.354 7.366 1.00 22.71 O
ATOM 6 C5' G B 12 -6.729 -29.725 7.107 1.00 22.42 C
ATOM 7 C4' G B 12 -5.630 -30.738 6.959 1.00 21.97 C
ATOM 8 O4' G B 12 -6.047 -31.918 6.233 1.00 21.98 O
ATOM 9 C3' G B 12 -4.529 -30.152 6.121 1.00 21.66 C
ATOM 10 O3' G B 12 -3.750 -29.328 6.936 1.00 21.25 O
ATOM 11 C2' G B 12 -3.838 -31.372 5.548 1.00 20.80 C
ATOM 12 O2' G B 12 -2.972 -31.940 6.502 1.00 20.71 O
ATOM 13 C1' G B 12 -5.025 -32.307 5.324 1.00 21.52 C
ATOM 14 N9 G B 12 -5.579 -32.248 3.973 1.00 22.07 N
ATOM 15 C8 G B 12 -6.864 -31.893 3.636 1.00 23.64 C
ATOM 16 N7 G B 12 -7.091 -31.928 2.352 1.00 24.25 N
ATOM 17 C5 G B 12 -5.883 -32.328 1.802 1.00 24.00 C
ATOM 18 C6 G B 12 -5.525 -32.538 0.450 1.00 24.51 C
ATOM 19 O6 G B 12 -6.230 -32.404 -0.563 1.00 25.49 O
ATOM 20 N1 G B 12 -4.202 -32.944 0.330 1.00 22.87 N
ATOM 21 C2 G B 12 -3.337 -33.121 1.374 1.00 23.52 C
ATOM 22 N2 G B 12 -2.103 -33.524 1.050 1.00 23.07 N
ATOM 23 N3 G B 12 -3.655 -32.923 2.644 1.00 24.10 N
ATOM 24 C4 G B 12 -4.938 -32.532 2.785 1.00 23.29 C
ATOM 25 P C B 13 -3.502 -27.827 6.479 1.00 22.40 P
ATOM 26 OP1 C B 13 -2.942 -27.080 7.634 1.00 22.41 O
ATOM 27 OP2 C B 13 -4.751 -27.345 5.824 1.00 20.68 O
ATOM 28 O5' C B 13 -2.374 -28.005 5.366 1.00 22.62 O
TER
Atoms:
C4: (3.492,-34.211,1.186)
N3: (2.142,-34.078,1.395)
OP1: (6.882,-28.960,6.657)
OP2: (7.580,-30.551,4.763)
C2: (1.525,-33.343,2.375)
C1': (1.775,-31.934,4.347)
C3': (2.838,-32.356,6.424)
O5': (5.242,-30.574,5.612)
O4': (2.586,-30.826,4.689)
C5': (4.141,-30.089,6.405)
P: (6.550,-29.681,5.400)
C4': (2.875,-30.867,6.110)
C2': (1.668,-32.834,5.578)
O2': (0.420,-32.641,6.216)
N1: (2.382,-32.670,3.231)
O4: (3.891,-35.006,0.339)
O2: (0.309,-33.300,2.479)
C6: (3.741,-32.729,3.051)
C5: (4.309,-33.462,2.086)
O3': (2.575,-32.626,7.786)
N3: (2.142,-34.078,1.395)
OP1: (6.882,-28.960,6.657)
OP2: (7.580,-30.551,4.763)
C2: (1.525,-33.343,2.375)
C1': (1.775,-31.934,4.347)
C3': (2.838,-32.356,6.424)
O5': (5.242,-30.574,5.612)
O4': (2.586,-30.826,4.689)
C5': (4.141,-30.089,6.405)
P: (6.550,-29.681,5.400)
C4': (2.875,-30.867,6.110)
C2': (1.668,-32.834,5.578)
O2': (0.420,-32.641,6.216)
N1: (2.382,-32.670,3.231)
O4: (3.891,-35.006,0.339)
O2: (0.309,-33.300,2.479)
C6: (3.741,-32.729,3.051)
C5: (4.309,-33.462,2.086)
O3': (2.575,-32.626,7.786)
OP1: (-10.364,-29.699,7.368)
OP2: (-8.812,-29.007,5.450)
C3': (-4.529,-30.152,6.121)
C1': (-5.025,-32.307,5.324)
C5': (-6.729,-29.725,7.107)
O6: (-6.230,-32.404,-0.563)
O4': (-6.047,-31.918,6.233)
C8: (-6.864,-31.893,3.636)
C2: (-3.337,-33.121,1.374)
C6: (-5.525,-32.538,0.450)
C5: (-5.883,-32.328,1.802)
C4: (-4.938,-32.532,2.785)
P: (-9.221,-29.998,6.470)
C4': (-5.630,-30.738,6.959)
C2': (-3.838,-31.372,5.548)
O2': (-2.972,-31.940,6.502)
N1: (-4.202,-32.944,0.330)
N2: (-2.103,-33.524,1.050)
N3: (-3.655,-32.923,2.644)
N7: (-7.091,-31.928,2.352)
N9: (-5.579,-32.248,3.973)
O5': (-7.965,-30.354,7.366)
O3': (-3.750,-29.328,6.936)
OP2: (-8.812,-29.007,5.450)
C3': (-4.529,-30.152,6.121)
C1': (-5.025,-32.307,5.324)
C5': (-6.729,-29.725,7.107)
O6: (-6.230,-32.404,-0.563)
O4': (-6.047,-31.918,6.233)
C8: (-6.864,-31.893,3.636)
C2: (-3.337,-33.121,1.374)
C6: (-5.525,-32.538,0.450)
C5: (-5.883,-32.328,1.802)
C4: (-4.938,-32.532,2.785)
P: (-9.221,-29.998,6.470)
C4': (-5.630,-30.738,6.959)
C2': (-3.838,-31.372,5.548)
O2': (-2.972,-31.940,6.502)
N1: (-4.202,-32.944,0.330)
N2: (-2.103,-33.524,1.050)
N3: (-3.655,-32.923,2.644)
N7: (-7.091,-31.928,2.352)
N9: (-5.579,-32.248,3.973)
O5': (-7.965,-30.354,7.366)
O3': (-3.750,-29.328,6.936)
Image (generated by PyMOL):