Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:130:147
Extra
PDB:
ATOM 1 O3' U A 29 36.855 -23.860 111.272 1.00 41.59 O
ATOM 2 P G A 30 36.319 -24.407 109.844 1.00 36.36 P
ATOM 3 OP1 G A 30 34.928 -23.966 109.683 1.00 36.27 O
ATOM 4 OP2 G A 30 36.625 -25.860 109.775 1.00 36.47 O
ATOM 5 O5' G A 30 37.237 -23.635 108.815 1.00 36.03 O
ATOM 6 C5' G A 30 36.782 -22.491 108.148 1.00 35.77 C
ATOM 7 C4' G A 30 37.816 -22.005 107.180 1.00 35.49 C
ATOM 8 O4' G A 30 39.122 -21.911 107.813 1.00 35.67 O
ATOM 9 C3' G A 30 38.059 -22.879 105.981 1.00 35.26 C
ATOM 10 O3' G A 30 37.012 -22.734 105.026 1.00 35.00 O
ATOM 11 C2' G A 30 39.413 -22.351 105.510 1.00 35.13 C
ATOM 12 O2' G A 30 39.274 -21.070 104.930 1.00 34.90 O
ATOM 13 C1' G A 30 40.125 -22.171 106.845 1.00 35.46 C
ATOM 14 N9 G A 30 40.855 -23.400 107.213 1.00 35.67 N
ATOM 15 C8 G A 30 40.496 -24.470 107.963 1.00 35.94 C
ATOM 16 N7 G A 30 41.396 -25.399 108.001 1.00 36.06 N
ATOM 17 C5 G A 30 42.423 -24.905 107.257 1.00 35.85 C
ATOM 18 C6 G A 30 43.679 -25.451 106.926 1.00 35.86 C
ATOM 19 O6 G A 30 44.140 -26.537 107.292 1.00 36.08 O
ATOM 20 N1 G A 30 44.412 -24.611 106.109 1.00 35.61 N
ATOM 21 C2 G A 30 43.951 -23.400 105.694 1.00 35.39 C
ATOM 22 N2 G A 30 44.704 -22.666 104.900 1.00 35.17 N
ATOM 23 N3 G A 30 42.795 -22.885 105.985 1.00 35.38 N
ATOM 24 C4 G A 30 42.081 -23.701 106.746 1.00 35.61 C
ATOM 25 P A A 31 36.838 -23.718 103.781 1.00 36.37 P
ATOM 26 OP1 A A 31 35.743 -23.169 102.976 1.00 36.14 O
ATOM 27 OP2 A A 31 36.731 -25.088 104.321 1.00 36.61 O
ATOM 28 O5' A A 31 38.214 -23.554 103.004 1.00 36.19 O
TER
ATOM 1 O3' A B 46 47.195 -27.607 104.419 1.00 36.94 O
ATOM 2 P U B 47 47.880 -26.637 105.452 1.00 36.02 P
ATOM 3 OP1 U B 47 48.994 -27.391 106.082 1.00 36.33 O
ATOM 4 OP2 U B 47 46.820 -26.096 106.303 1.00 36.12 O
ATOM 5 O5' U B 47 48.439 -25.493 104.518 1.00 35.71 O
ATOM 6 C5' U B 47 49.660 -25.634 103.808 1.00 35.63 C
ATOM 7 C4' U B 47 49.761 -24.591 102.725 1.00 35.28 C
ATOM 8 O4' U B 47 48.877 -24.960 101.630 1.00 35.01 O
ATOM 9 C3' U B 47 49.283 -23.202 103.128 1.00 35.23 C
ATOM 10 O3' U B 47 50.277 -22.421 103.706 1.00 35.37 O
ATOM 11 C2' U B 47 48.738 -22.614 101.854 1.00 34.85 C
ATOM 12 O2' U B 47 49.799 -22.135 101.048 1.00 34.70 O
ATOM 13 C1' U B 47 48.134 -23.844 101.199 1.00 34.77 C
ATOM 14 N1 U B 47 46.751 -24.042 101.612 1.00 34.80 N
ATOM 15 C2 U B 47 45.852 -23.166 101.051 1.00 34.56 C
ATOM 16 O2 U B 47 46.257 -22.348 100.272 1.00 34.34 O
ATOM 17 N3 U B 47 44.495 -23.248 101.352 1.00 34.58 N
ATOM 18 C4 U B 47 44.005 -24.159 102.195 1.00 34.82 C
ATOM 19 O4 U B 47 42.834 -24.077 102.365 1.00 34.81 O
ATOM 20 C5 U B 47 44.958 -25.063 102.759 1.00 35.07 C
ATOM 21 C6 U B 47 46.282 -24.988 102.478 1.00 35.06 C
ATOM 22 P A B 48 49.855 -21.318 104.753 1.00 38.76 P
ATOM 23 OP1 A B 48 51.073 -20.873 105.456 1.00 38.99 O
ATOM 24 OP2 A B 48 48.762 -21.891 105.572 1.00 38.94 O
ATOM 25 O5' A B 48 49.266 -20.172 103.811 1.00 38.42 O
TER
ATOM 2 P G A 30 36.319 -24.407 109.844 1.00 36.36 P
ATOM 3 OP1 G A 30 34.928 -23.966 109.683 1.00 36.27 O
ATOM 4 OP2 G A 30 36.625 -25.860 109.775 1.00 36.47 O
ATOM 5 O5' G A 30 37.237 -23.635 108.815 1.00 36.03 O
ATOM 6 C5' G A 30 36.782 -22.491 108.148 1.00 35.77 C
ATOM 7 C4' G A 30 37.816 -22.005 107.180 1.00 35.49 C
ATOM 8 O4' G A 30 39.122 -21.911 107.813 1.00 35.67 O
ATOM 9 C3' G A 30 38.059 -22.879 105.981 1.00 35.26 C
ATOM 10 O3' G A 30 37.012 -22.734 105.026 1.00 35.00 O
ATOM 11 C2' G A 30 39.413 -22.351 105.510 1.00 35.13 C
ATOM 12 O2' G A 30 39.274 -21.070 104.930 1.00 34.90 O
ATOM 13 C1' G A 30 40.125 -22.171 106.845 1.00 35.46 C
ATOM 14 N9 G A 30 40.855 -23.400 107.213 1.00 35.67 N
ATOM 15 C8 G A 30 40.496 -24.470 107.963 1.00 35.94 C
ATOM 16 N7 G A 30 41.396 -25.399 108.001 1.00 36.06 N
ATOM 17 C5 G A 30 42.423 -24.905 107.257 1.00 35.85 C
ATOM 18 C6 G A 30 43.679 -25.451 106.926 1.00 35.86 C
ATOM 19 O6 G A 30 44.140 -26.537 107.292 1.00 36.08 O
ATOM 20 N1 G A 30 44.412 -24.611 106.109 1.00 35.61 N
ATOM 21 C2 G A 30 43.951 -23.400 105.694 1.00 35.39 C
ATOM 22 N2 G A 30 44.704 -22.666 104.900 1.00 35.17 N
ATOM 23 N3 G A 30 42.795 -22.885 105.985 1.00 35.38 N
ATOM 24 C4 G A 30 42.081 -23.701 106.746 1.00 35.61 C
ATOM 25 P A A 31 36.838 -23.718 103.781 1.00 36.37 P
ATOM 26 OP1 A A 31 35.743 -23.169 102.976 1.00 36.14 O
ATOM 27 OP2 A A 31 36.731 -25.088 104.321 1.00 36.61 O
ATOM 28 O5' A A 31 38.214 -23.554 103.004 1.00 36.19 O
TER
ATOM 1 O3' A B 46 47.195 -27.607 104.419 1.00 36.94 O
ATOM 2 P U B 47 47.880 -26.637 105.452 1.00 36.02 P
ATOM 3 OP1 U B 47 48.994 -27.391 106.082 1.00 36.33 O
ATOM 4 OP2 U B 47 46.820 -26.096 106.303 1.00 36.12 O
ATOM 5 O5' U B 47 48.439 -25.493 104.518 1.00 35.71 O
ATOM 6 C5' U B 47 49.660 -25.634 103.808 1.00 35.63 C
ATOM 7 C4' U B 47 49.761 -24.591 102.725 1.00 35.28 C
ATOM 8 O4' U B 47 48.877 -24.960 101.630 1.00 35.01 O
ATOM 9 C3' U B 47 49.283 -23.202 103.128 1.00 35.23 C
ATOM 10 O3' U B 47 50.277 -22.421 103.706 1.00 35.37 O
ATOM 11 C2' U B 47 48.738 -22.614 101.854 1.00 34.85 C
ATOM 12 O2' U B 47 49.799 -22.135 101.048 1.00 34.70 O
ATOM 13 C1' U B 47 48.134 -23.844 101.199 1.00 34.77 C
ATOM 14 N1 U B 47 46.751 -24.042 101.612 1.00 34.80 N
ATOM 15 C2 U B 47 45.852 -23.166 101.051 1.00 34.56 C
ATOM 16 O2 U B 47 46.257 -22.348 100.272 1.00 34.34 O
ATOM 17 N3 U B 47 44.495 -23.248 101.352 1.00 34.58 N
ATOM 18 C4 U B 47 44.005 -24.159 102.195 1.00 34.82 C
ATOM 19 O4 U B 47 42.834 -24.077 102.365 1.00 34.81 O
ATOM 20 C5 U B 47 44.958 -25.063 102.759 1.00 35.07 C
ATOM 21 C6 U B 47 46.282 -24.988 102.478 1.00 35.06 C
ATOM 22 P A B 48 49.855 -21.318 104.753 1.00 38.76 P
ATOM 23 OP1 A B 48 51.073 -20.873 105.456 1.00 38.99 O
ATOM 24 OP2 A B 48 48.762 -21.891 105.572 1.00 38.94 O
ATOM 25 O5' A B 48 49.266 -20.172 103.811 1.00 38.42 O
TER
Atoms:
OP1: (34.928,-23.966,109.683)
OP2: (36.625,-25.860,109.775)
C3': (38.059,-22.879,105.981)
C1': (40.125,-22.171,106.845)
C5': (36.782,-22.491,108.148)
O6: (44.140,-26.537,107.292)
O4': (39.122,-21.911,107.813)
C8: (40.496,-24.470,107.963)
C2: (43.951,-23.400,105.694)
C6: (43.679,-25.451,106.926)
C5: (42.423,-24.905,107.257)
C4: (42.081,-23.701,106.746)
P: (36.319,-24.407,109.844)
C4': (37.816,-22.005,107.180)
C2': (39.413,-22.351,105.510)
O2': (39.274,-21.070,104.930)
N1: (44.412,-24.611,106.109)
N2: (44.704,-22.666,104.900)
N3: (42.795,-22.885,105.985)
N7: (41.396,-25.399,108.001)
N9: (40.855,-23.400,107.213)
O5': (37.237,-23.635,108.815)
O3': (37.012,-22.734,105.026)
OP2: (36.625,-25.860,109.775)
C3': (38.059,-22.879,105.981)
C1': (40.125,-22.171,106.845)
C5': (36.782,-22.491,108.148)
O6: (44.140,-26.537,107.292)
O4': (39.122,-21.911,107.813)
C8: (40.496,-24.470,107.963)
C2: (43.951,-23.400,105.694)
C6: (43.679,-25.451,106.926)
C5: (42.423,-24.905,107.257)
C4: (42.081,-23.701,106.746)
P: (36.319,-24.407,109.844)
C4': (37.816,-22.005,107.180)
C2': (39.413,-22.351,105.510)
O2': (39.274,-21.070,104.930)
N1: (44.412,-24.611,106.109)
N2: (44.704,-22.666,104.900)
N3: (42.795,-22.885,105.985)
N7: (41.396,-25.399,108.001)
N9: (40.855,-23.400,107.213)
O5': (37.237,-23.635,108.815)
O3': (37.012,-22.734,105.026)
C4: (44.005,-24.159,102.195)
N3: (44.495,-23.248,101.352)
OP1: (48.994,-27.391,106.082)
OP2: (46.820,-26.096,106.303)
C2: (45.852,-23.166,101.051)
C1': (48.134,-23.844,101.199)
C3': (49.283,-23.202,103.128)
O5': (48.439,-25.493,104.518)
O4': (48.877,-24.960,101.630)
C5': (49.660,-25.634,103.808)
P: (47.880,-26.637,105.452)
C4': (49.761,-24.591,102.725)
C2': (48.738,-22.614,101.854)
O2': (49.799,-22.135,101.048)
N1: (46.751,-24.042,101.612)
O4: (42.834,-24.077,102.365)
O2: (46.257,-22.348,100.272)
C6: (46.282,-24.988,102.478)
C5: (44.958,-25.063,102.759)
O3': (50.277,-22.421,103.706)
N3: (44.495,-23.248,101.352)
OP1: (48.994,-27.391,106.082)
OP2: (46.820,-26.096,106.303)
C2: (45.852,-23.166,101.051)
C1': (48.134,-23.844,101.199)
C3': (49.283,-23.202,103.128)
O5': (48.439,-25.493,104.518)
O4': (48.877,-24.960,101.630)
C5': (49.660,-25.634,103.808)
P: (47.880,-26.637,105.452)
C4': (49.761,-24.591,102.725)
C2': (48.738,-22.614,101.854)
O2': (49.799,-22.135,101.048)
N1: (46.751,-24.042,101.612)
O4: (42.834,-24.077,102.365)
O2: (46.257,-22.348,100.272)
C6: (46.282,-24.988,102.478)
C5: (44.958,-25.063,102.759)
O3': (50.277,-22.421,103.706)
Image (generated by PyMOL):