Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQM:0556:0577
Extra
PDB:
ATOM 1 O3' U A 555 4.265 91.985 107.838 1.00 48.91 O
ATOM 2 P G A 556 3.734 91.417 109.252 1.00 48.63 P
ATOM 3 OP1 G A 556 4.728 91.816 110.282 1.00 50.02 O
ATOM 4 OP2 G A 556 3.394 89.987 109.085 1.00 46.03 O
ATOM 5 O5' G A 556 2.405 92.249 109.522 1.00 46.34 O
ATOM 6 C5' G A 556 2.458 93.575 110.069 1.00 48.46 C
ATOM 7 C4' G A 556 1.058 94.092 110.291 1.00 52.55 C
ATOM 8 O4' G A 556 0.376 94.213 109.007 1.00 52.74 O
ATOM 9 C3' G A 556 0.148 93.166 111.085 1.00 53.73 C
ATOM 10 O3' G A 556 0.359 93.236 112.490 1.00 56.19 O
ATOM 11 C2' G A 556 -1.233 93.634 110.654 1.00 52.36 C
ATOM 12 O2' G A 556 -1.597 94.848 111.283 1.00 49.38 O
ATOM 13 C1' G A 556 -1.000 93.875 109.160 1.00 51.28 C
ATOM 14 N9 G A 556 -1.271 92.690 108.350 1.00 48.06 N
ATOM 15 C8 G A 556 -0.370 91.725 107.973 1.00 48.49 C
ATOM 16 N7 G A 556 -0.905 90.775 107.253 1.00 48.66 N
ATOM 17 C5 G A 556 -2.241 91.133 107.150 1.00 47.15 C
ATOM 18 C6 G A 556 -3.311 90.487 106.487 1.00 47.30 C
ATOM 19 O6 G A 556 -3.288 89.431 105.848 1.00 46.79 O
ATOM 20 N1 G A 556 -4.502 91.193 106.622 1.00 44.45 N
ATOM 21 C2 G A 556 -4.644 92.369 107.311 1.00 47.62 C
ATOM 22 N2 G A 556 -5.875 92.899 107.333 1.00 47.78 N
ATOM 23 N3 G A 556 -3.651 92.984 107.937 1.00 49.67 N
ATOM 24 C4 G A 556 -2.485 92.314 107.816 1.00 48.48 C
ATOM 25 P A A 557 -0.108 92.008 113.420 1.00 59.53 P
ATOM 26 OP1 A A 557 0.486 92.236 114.765 1.00 59.61 O
ATOM 27 OP2 A A 557 0.135 90.716 112.721 1.00 54.56 O
ATOM 28 O5' A A 557 -1.681 92.223 113.513 1.00 59.99 O
TER
ATOM 1 O3' G B 576 -7.807 88.463 106.576 1.00 70.30 O
ATOM 2 P U B 577 -8.101 89.509 105.384 1.00 70.33 P
ATOM 3 OP1 U B 577 -8.686 88.773 104.231 1.00 70.85 O
ATOM 4 OP2 U B 577 -6.894 90.344 105.179 1.00 71.69 O
ATOM 5 O5' U B 577 -9.211 90.469 106.009 1.00 70.25 O
ATOM 6 C5' U B 577 -10.527 89.972 106.357 1.00 69.94 C
ATOM 7 C4' U B 577 -11.059 90.689 107.582 1.00 68.98 C
ATOM 8 O4' U B 577 -10.387 90.226 108.784 1.00 68.48 O
ATOM 9 C3' U B 577 -10.846 92.189 107.584 1.00 68.79 C
ATOM 10 O3' U B 577 -11.840 92.842 106.806 1.00 70.86 O
ATOM 11 C2' U B 577 -10.905 92.539 109.068 1.00 68.44 C
ATOM 12 O2' U B 577 -12.213 92.680 109.571 1.00 68.17 O
ATOM 13 C1' U B 577 -10.259 91.304 109.707 1.00 67.98 C
ATOM 14 N1 U B 577 -8.840 91.448 110.094 1.00 67.27 N
ATOM 15 C2 U B 577 -8.498 92.467 110.982 1.00 67.32 C
ATOM 16 O2 U B 577 -9.308 93.257 111.448 1.00 67.10 O
ATOM 17 N3 U B 577 -7.165 92.527 111.306 1.00 67.67 N
ATOM 18 C4 U B 577 -6.155 91.704 110.849 1.00 67.98 C
ATOM 19 O4 U B 577 -4.998 91.896 111.234 1.00 68.44 O
ATOM 20 C5 U B 577 -6.580 90.681 109.942 1.00 66.27 C
ATOM 21 C6 U B 577 -7.870 90.590 109.602 1.00 67.11 C
ATOM 22 P A B 578 -11.468 94.183 106.003 1.00 72.62 P
ATOM 23 OP1 A B 578 -12.669 94.637 105.256 1.00 73.49 O
ATOM 24 OP2 A B 578 -10.194 93.953 105.271 1.00 73.52 O
ATOM 25 O5' A B 578 -11.189 95.239 107.157 1.00 69.42 O
TER
ATOM 2 P G A 556 3.734 91.417 109.252 1.00 48.63 P
ATOM 3 OP1 G A 556 4.728 91.816 110.282 1.00 50.02 O
ATOM 4 OP2 G A 556 3.394 89.987 109.085 1.00 46.03 O
ATOM 5 O5' G A 556 2.405 92.249 109.522 1.00 46.34 O
ATOM 6 C5' G A 556 2.458 93.575 110.069 1.00 48.46 C
ATOM 7 C4' G A 556 1.058 94.092 110.291 1.00 52.55 C
ATOM 8 O4' G A 556 0.376 94.213 109.007 1.00 52.74 O
ATOM 9 C3' G A 556 0.148 93.166 111.085 1.00 53.73 C
ATOM 10 O3' G A 556 0.359 93.236 112.490 1.00 56.19 O
ATOM 11 C2' G A 556 -1.233 93.634 110.654 1.00 52.36 C
ATOM 12 O2' G A 556 -1.597 94.848 111.283 1.00 49.38 O
ATOM 13 C1' G A 556 -1.000 93.875 109.160 1.00 51.28 C
ATOM 14 N9 G A 556 -1.271 92.690 108.350 1.00 48.06 N
ATOM 15 C8 G A 556 -0.370 91.725 107.973 1.00 48.49 C
ATOM 16 N7 G A 556 -0.905 90.775 107.253 1.00 48.66 N
ATOM 17 C5 G A 556 -2.241 91.133 107.150 1.00 47.15 C
ATOM 18 C6 G A 556 -3.311 90.487 106.487 1.00 47.30 C
ATOM 19 O6 G A 556 -3.288 89.431 105.848 1.00 46.79 O
ATOM 20 N1 G A 556 -4.502 91.193 106.622 1.00 44.45 N
ATOM 21 C2 G A 556 -4.644 92.369 107.311 1.00 47.62 C
ATOM 22 N2 G A 556 -5.875 92.899 107.333 1.00 47.78 N
ATOM 23 N3 G A 556 -3.651 92.984 107.937 1.00 49.67 N
ATOM 24 C4 G A 556 -2.485 92.314 107.816 1.00 48.48 C
ATOM 25 P A A 557 -0.108 92.008 113.420 1.00 59.53 P
ATOM 26 OP1 A A 557 0.486 92.236 114.765 1.00 59.61 O
ATOM 27 OP2 A A 557 0.135 90.716 112.721 1.00 54.56 O
ATOM 28 O5' A A 557 -1.681 92.223 113.513 1.00 59.99 O
TER
ATOM 1 O3' G B 576 -7.807 88.463 106.576 1.00 70.30 O
ATOM 2 P U B 577 -8.101 89.509 105.384 1.00 70.33 P
ATOM 3 OP1 U B 577 -8.686 88.773 104.231 1.00 70.85 O
ATOM 4 OP2 U B 577 -6.894 90.344 105.179 1.00 71.69 O
ATOM 5 O5' U B 577 -9.211 90.469 106.009 1.00 70.25 O
ATOM 6 C5' U B 577 -10.527 89.972 106.357 1.00 69.94 C
ATOM 7 C4' U B 577 -11.059 90.689 107.582 1.00 68.98 C
ATOM 8 O4' U B 577 -10.387 90.226 108.784 1.00 68.48 O
ATOM 9 C3' U B 577 -10.846 92.189 107.584 1.00 68.79 C
ATOM 10 O3' U B 577 -11.840 92.842 106.806 1.00 70.86 O
ATOM 11 C2' U B 577 -10.905 92.539 109.068 1.00 68.44 C
ATOM 12 O2' U B 577 -12.213 92.680 109.571 1.00 68.17 O
ATOM 13 C1' U B 577 -10.259 91.304 109.707 1.00 67.98 C
ATOM 14 N1 U B 577 -8.840 91.448 110.094 1.00 67.27 N
ATOM 15 C2 U B 577 -8.498 92.467 110.982 1.00 67.32 C
ATOM 16 O2 U B 577 -9.308 93.257 111.448 1.00 67.10 O
ATOM 17 N3 U B 577 -7.165 92.527 111.306 1.00 67.67 N
ATOM 18 C4 U B 577 -6.155 91.704 110.849 1.00 67.98 C
ATOM 19 O4 U B 577 -4.998 91.896 111.234 1.00 68.44 O
ATOM 20 C5 U B 577 -6.580 90.681 109.942 1.00 66.27 C
ATOM 21 C6 U B 577 -7.870 90.590 109.602 1.00 67.11 C
ATOM 22 P A B 578 -11.468 94.183 106.003 1.00 72.62 P
ATOM 23 OP1 A B 578 -12.669 94.637 105.256 1.00 73.49 O
ATOM 24 OP2 A B 578 -10.194 93.953 105.271 1.00 73.52 O
ATOM 25 O5' A B 578 -11.189 95.239 107.157 1.00 69.42 O
TER
Atoms:
OP1: (4.728,91.816,110.282)
OP2: (3.394,89.987,109.085)
C3': (0.148,93.166,111.085)
C1': (-1.000,93.875,109.160)
C5': (2.458,93.575,110.069)
O6: (-3.288,89.431,105.848)
O4': (0.376,94.213,109.007)
C8: (-0.370,91.725,107.973)
C2: (-4.644,92.369,107.311)
C6: (-3.311,90.487,106.487)
C5: (-2.241,91.133,107.150)
C4: (-2.485,92.314,107.816)
P: (3.734,91.417,109.252)
C4': (1.058,94.092,110.291)
C2': (-1.233,93.634,110.654)
O2': (-1.597,94.848,111.283)
N1: (-4.502,91.193,106.622)
N2: (-5.875,92.899,107.333)
N3: (-3.651,92.984,107.937)
N7: (-0.905,90.775,107.253)
N9: (-1.271,92.690,108.350)
O5': (2.405,92.249,109.522)
O3': (0.359,93.236,112.490)
OP2: (3.394,89.987,109.085)
C3': (0.148,93.166,111.085)
C1': (-1.000,93.875,109.160)
C5': (2.458,93.575,110.069)
O6: (-3.288,89.431,105.848)
O4': (0.376,94.213,109.007)
C8: (-0.370,91.725,107.973)
C2: (-4.644,92.369,107.311)
C6: (-3.311,90.487,106.487)
C5: (-2.241,91.133,107.150)
C4: (-2.485,92.314,107.816)
P: (3.734,91.417,109.252)
C4': (1.058,94.092,110.291)
C2': (-1.233,93.634,110.654)
O2': (-1.597,94.848,111.283)
N1: (-4.502,91.193,106.622)
N2: (-5.875,92.899,107.333)
N3: (-3.651,92.984,107.937)
N7: (-0.905,90.775,107.253)
N9: (-1.271,92.690,108.350)
O5': (2.405,92.249,109.522)
O3': (0.359,93.236,112.490)
C4: (-6.155,91.704,110.849)
N3: (-7.165,92.527,111.306)
OP1: (-8.686,88.773,104.231)
OP2: (-6.894,90.344,105.179)
C2: (-8.498,92.467,110.982)
C1': (-10.259,91.304,109.707)
C3': (-10.846,92.189,107.584)
O5': (-9.211,90.469,106.009)
O4': (-10.387,90.226,108.784)
C5': (-10.527,89.972,106.357)
P: (-8.101,89.509,105.384)
C4': (-11.059,90.689,107.582)
C2': (-10.905,92.539,109.068)
O2': (-12.213,92.680,109.571)
N1: (-8.840,91.448,110.094)
O4: (-4.998,91.896,111.234)
O2: (-9.308,93.257,111.448)
C6: (-7.870,90.590,109.602)
C5: (-6.580,90.681,109.942)
O3': (-11.840,92.842,106.806)
N3: (-7.165,92.527,111.306)
OP1: (-8.686,88.773,104.231)
OP2: (-6.894,90.344,105.179)
C2: (-8.498,92.467,110.982)
C1': (-10.259,91.304,109.707)
C3': (-10.846,92.189,107.584)
O5': (-9.211,90.469,106.009)
O4': (-10.387,90.226,108.784)
C5': (-10.527,89.972,106.357)
P: (-8.101,89.509,105.384)
C4': (-11.059,90.689,107.582)
C2': (-10.905,92.539,109.068)
O2': (-12.213,92.680,109.571)
N1: (-8.840,91.448,110.094)
O4: (-4.998,91.896,111.234)
O2: (-9.308,93.257,111.448)
C6: (-7.870,90.590,109.602)
C5: (-6.580,90.681,109.942)
O3': (-11.840,92.842,106.806)
Image (generated by PyMOL):