Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3CD6:0556:0577
Extra
PDB:
ATOM 1 O3' U A 555 4.285 93.250 108.291 1.00 44.64 O
ATOM 2 P G A 556 3.726 92.596 109.643 1.00 44.65 P
ATOM 3 OP1 G A 556 4.722 92.856 110.716 1.00 44.19 O
ATOM 4 OP2 G A 556 3.349 91.191 109.316 1.00 41.58 O
ATOM 5 O5' G A 556 2.413 93.447 109.947 1.00 41.22 O
ATOM 6 C5' G A 556 2.504 94.788 110.463 1.00 44.78 C
ATOM 7 C4' G A 556 1.120 95.354 110.703 1.00 47.92 C
ATOM 8 O4' G A 556 0.445 95.552 109.431 1.00 48.86 O
ATOM 9 C3' G A 556 0.166 94.461 111.480 1.00 49.16 C
ATOM 10 O3' G A 556 0.366 94.516 112.882 1.00 51.31 O
ATOM 11 C2' G A 556 -1.190 94.994 111.054 1.00 48.55 C
ATOM 12 O2' G A 556 -1.544 96.205 111.695 1.00 48.73 O
ATOM 13 C1' G A 556 -0.936 95.256 109.572 1.00 47.84 C
ATOM 14 N9 G A 556 -1.240 94.076 108.769 1.00 46.61 N
ATOM 15 C8 G A 556 -0.373 93.088 108.359 1.00 46.46 C
ATOM 16 N7 G A 556 -0.954 92.160 107.648 1.00 45.44 N
ATOM 17 C5 G A 556 -2.283 92.559 107.589 1.00 46.00 C
ATOM 18 C6 G A 556 -3.397 91.956 106.955 1.00 45.07 C
ATOM 19 O6 G A 556 -3.438 90.912 106.300 1.00 45.91 O
ATOM 20 N1 G A 556 -4.554 92.698 107.144 1.00 44.67 N
ATOM 21 C2 G A 556 -4.635 93.870 107.854 1.00 46.05 C
ATOM 22 N2 G A 556 -5.843 94.447 107.923 1.00 46.08 N
ATOM 23 N3 G A 556 -3.609 94.438 108.453 1.00 46.26 N
ATOM 24 C4 G A 556 -2.472 93.737 108.277 1.00 46.16 C
ATOM 25 P A A 557 -0.142 93.300 113.796 1.00 51.37 P
ATOM 26 OP1 A A 557 0.538 93.426 115.102 1.00 51.83 O
ATOM 27 OP2 A A 557 -0.046 92.024 113.033 1.00 50.51 O
ATOM 28 O5' A A 557 -1.681 93.627 114.005 1.00 53.47 O
TER
ATOM 1 O3' G B 576 -8.015 89.807 107.159 1.00 60.38 O
ATOM 2 P U B 577 -8.147 90.905 105.988 1.00 60.50 P
ATOM 3 OP1 U B 577 -8.574 90.215 104.742 1.00 60.03 O
ATOM 4 OP2 U B 577 -6.931 91.750 105.981 1.00 59.79 O
ATOM 5 O5' U B 577 -9.324 91.846 106.507 1.00 59.85 O
ATOM 6 C5' U B 577 -10.617 91.308 106.880 1.00 57.52 C
ATOM 7 C4' U B 577 -11.138 92.011 108.114 1.00 55.80 C
ATOM 8 O4' U B 577 -10.464 91.507 109.291 1.00 54.60 O
ATOM 9 C3' U B 577 -10.886 93.508 108.142 1.00 56.70 C
ATOM 10 O3' U B 577 -11.861 94.227 107.396 1.00 57.77 O
ATOM 11 C2' U B 577 -10.895 93.831 109.631 1.00 56.23 C
ATOM 12 O2' U B 577 -12.184 94.034 110.172 1.00 57.40 O
ATOM 13 C1' U B 577 -10.266 92.564 110.221 1.00 55.62 C
ATOM 14 N1 U B 577 -8.825 92.669 110.524 1.00 54.92 N
ATOM 15 C2 U B 577 -8.423 93.610 111.466 1.00 53.97 C
ATOM 16 O2 U B 577 -9.198 94.353 112.042 1.00 51.96 O
ATOM 17 N3 U B 577 -7.072 93.648 111.705 1.00 53.92 N
ATOM 18 C4 U B 577 -6.098 92.870 111.120 1.00 54.40 C
ATOM 19 O4 U B 577 -4.921 93.055 111.421 1.00 55.03 O
ATOM 20 C5 U B 577 -6.583 91.922 110.163 1.00 53.83 C
ATOM 21 C6 U B 577 -7.894 91.856 109.901 1.00 54.60 C
ATOM 22 P A B 578 -11.402 95.457 106.472 1.00 59.60 P
ATOM 23 OP1 A B 578 -12.537 95.875 105.612 1.00 61.85 O
ATOM 24 OP2 A B 578 -10.115 95.061 105.840 1.00 60.68 O
ATOM 25 O5' A B 578 -11.136 96.632 107.512 1.00 55.29 O
TER
ATOM 2 P G A 556 3.726 92.596 109.643 1.00 44.65 P
ATOM 3 OP1 G A 556 4.722 92.856 110.716 1.00 44.19 O
ATOM 4 OP2 G A 556 3.349 91.191 109.316 1.00 41.58 O
ATOM 5 O5' G A 556 2.413 93.447 109.947 1.00 41.22 O
ATOM 6 C5' G A 556 2.504 94.788 110.463 1.00 44.78 C
ATOM 7 C4' G A 556 1.120 95.354 110.703 1.00 47.92 C
ATOM 8 O4' G A 556 0.445 95.552 109.431 1.00 48.86 O
ATOM 9 C3' G A 556 0.166 94.461 111.480 1.00 49.16 C
ATOM 10 O3' G A 556 0.366 94.516 112.882 1.00 51.31 O
ATOM 11 C2' G A 556 -1.190 94.994 111.054 1.00 48.55 C
ATOM 12 O2' G A 556 -1.544 96.205 111.695 1.00 48.73 O
ATOM 13 C1' G A 556 -0.936 95.256 109.572 1.00 47.84 C
ATOM 14 N9 G A 556 -1.240 94.076 108.769 1.00 46.61 N
ATOM 15 C8 G A 556 -0.373 93.088 108.359 1.00 46.46 C
ATOM 16 N7 G A 556 -0.954 92.160 107.648 1.00 45.44 N
ATOM 17 C5 G A 556 -2.283 92.559 107.589 1.00 46.00 C
ATOM 18 C6 G A 556 -3.397 91.956 106.955 1.00 45.07 C
ATOM 19 O6 G A 556 -3.438 90.912 106.300 1.00 45.91 O
ATOM 20 N1 G A 556 -4.554 92.698 107.144 1.00 44.67 N
ATOM 21 C2 G A 556 -4.635 93.870 107.854 1.00 46.05 C
ATOM 22 N2 G A 556 -5.843 94.447 107.923 1.00 46.08 N
ATOM 23 N3 G A 556 -3.609 94.438 108.453 1.00 46.26 N
ATOM 24 C4 G A 556 -2.472 93.737 108.277 1.00 46.16 C
ATOM 25 P A A 557 -0.142 93.300 113.796 1.00 51.37 P
ATOM 26 OP1 A A 557 0.538 93.426 115.102 1.00 51.83 O
ATOM 27 OP2 A A 557 -0.046 92.024 113.033 1.00 50.51 O
ATOM 28 O5' A A 557 -1.681 93.627 114.005 1.00 53.47 O
TER
ATOM 1 O3' G B 576 -8.015 89.807 107.159 1.00 60.38 O
ATOM 2 P U B 577 -8.147 90.905 105.988 1.00 60.50 P
ATOM 3 OP1 U B 577 -8.574 90.215 104.742 1.00 60.03 O
ATOM 4 OP2 U B 577 -6.931 91.750 105.981 1.00 59.79 O
ATOM 5 O5' U B 577 -9.324 91.846 106.507 1.00 59.85 O
ATOM 6 C5' U B 577 -10.617 91.308 106.880 1.00 57.52 C
ATOM 7 C4' U B 577 -11.138 92.011 108.114 1.00 55.80 C
ATOM 8 O4' U B 577 -10.464 91.507 109.291 1.00 54.60 O
ATOM 9 C3' U B 577 -10.886 93.508 108.142 1.00 56.70 C
ATOM 10 O3' U B 577 -11.861 94.227 107.396 1.00 57.77 O
ATOM 11 C2' U B 577 -10.895 93.831 109.631 1.00 56.23 C
ATOM 12 O2' U B 577 -12.184 94.034 110.172 1.00 57.40 O
ATOM 13 C1' U B 577 -10.266 92.564 110.221 1.00 55.62 C
ATOM 14 N1 U B 577 -8.825 92.669 110.524 1.00 54.92 N
ATOM 15 C2 U B 577 -8.423 93.610 111.466 1.00 53.97 C
ATOM 16 O2 U B 577 -9.198 94.353 112.042 1.00 51.96 O
ATOM 17 N3 U B 577 -7.072 93.648 111.705 1.00 53.92 N
ATOM 18 C4 U B 577 -6.098 92.870 111.120 1.00 54.40 C
ATOM 19 O4 U B 577 -4.921 93.055 111.421 1.00 55.03 O
ATOM 20 C5 U B 577 -6.583 91.922 110.163 1.00 53.83 C
ATOM 21 C6 U B 577 -7.894 91.856 109.901 1.00 54.60 C
ATOM 22 P A B 578 -11.402 95.457 106.472 1.00 59.60 P
ATOM 23 OP1 A B 578 -12.537 95.875 105.612 1.00 61.85 O
ATOM 24 OP2 A B 578 -10.115 95.061 105.840 1.00 60.68 O
ATOM 25 O5' A B 578 -11.136 96.632 107.512 1.00 55.29 O
TER
Atoms:
OP1: (4.722,92.856,110.716)
OP2: (3.349,91.191,109.316)
C3': (0.166,94.461,111.480)
C1': (-0.936,95.256,109.572)
C5': (2.504,94.788,110.463)
O6: (-3.438,90.912,106.300)
O4': (0.445,95.552,109.431)
C8: (-0.373,93.088,108.359)
C2: (-4.635,93.870,107.854)
C6: (-3.397,91.956,106.955)
C5: (-2.283,92.559,107.589)
C4: (-2.472,93.737,108.277)
P: (3.726,92.596,109.643)
C4': (1.120,95.354,110.703)
C2': (-1.190,94.994,111.054)
O2': (-1.544,96.205,111.695)
N1: (-4.554,92.698,107.144)
N2: (-5.843,94.447,107.923)
N3: (-3.609,94.438,108.453)
N7: (-0.954,92.160,107.648)
N9: (-1.240,94.076,108.769)
O5': (2.413,93.447,109.947)
O3': (0.366,94.516,112.882)
OP2: (3.349,91.191,109.316)
C3': (0.166,94.461,111.480)
C1': (-0.936,95.256,109.572)
C5': (2.504,94.788,110.463)
O6: (-3.438,90.912,106.300)
O4': (0.445,95.552,109.431)
C8: (-0.373,93.088,108.359)
C2: (-4.635,93.870,107.854)
C6: (-3.397,91.956,106.955)
C5: (-2.283,92.559,107.589)
C4: (-2.472,93.737,108.277)
P: (3.726,92.596,109.643)
C4': (1.120,95.354,110.703)
C2': (-1.190,94.994,111.054)
O2': (-1.544,96.205,111.695)
N1: (-4.554,92.698,107.144)
N2: (-5.843,94.447,107.923)
N3: (-3.609,94.438,108.453)
N7: (-0.954,92.160,107.648)
N9: (-1.240,94.076,108.769)
O5': (2.413,93.447,109.947)
O3': (0.366,94.516,112.882)
C4: (-6.098,92.870,111.120)
N3: (-7.072,93.648,111.705)
OP1: (-8.574,90.215,104.742)
OP2: (-6.931,91.750,105.981)
C2: (-8.423,93.610,111.466)
C1': (-10.266,92.564,110.221)
C3': (-10.886,93.508,108.142)
O5': (-9.324,91.846,106.507)
O4': (-10.464,91.507,109.291)
C5': (-10.617,91.308,106.880)
P: (-8.147,90.905,105.988)
C4': (-11.138,92.011,108.114)
C2': (-10.895,93.831,109.631)
O2': (-12.184,94.034,110.172)
N1: (-8.825,92.669,110.524)
O4: (-4.921,93.055,111.421)
O2: (-9.198,94.353,112.042)
C6: (-7.894,91.856,109.901)
C5: (-6.583,91.922,110.163)
O3': (-11.861,94.227,107.396)
N3: (-7.072,93.648,111.705)
OP1: (-8.574,90.215,104.742)
OP2: (-6.931,91.750,105.981)
C2: (-8.423,93.610,111.466)
C1': (-10.266,92.564,110.221)
C3': (-10.886,93.508,108.142)
O5': (-9.324,91.846,106.507)
O4': (-10.464,91.507,109.291)
C5': (-10.617,91.308,106.880)
P: (-8.147,90.905,105.988)
C4': (-11.138,92.011,108.114)
C2': (-10.895,93.831,109.631)
O2': (-12.184,94.034,110.172)
N1: (-8.825,92.669,110.524)
O4: (-4.921,93.055,111.421)
O2: (-9.198,94.353,112.042)
C6: (-7.894,91.856,109.901)
C5: (-6.583,91.922,110.163)
O3': (-11.861,94.227,107.396)
Image (generated by PyMOL):