Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12118:12081
Extra
PDB:
ATOM 1 O3' U A2117 -8.436 -3.739 78.426 1.00 51.92 O
ATOM 2 P G A2118 -8.366 -4.947 79.427 1.00 46.92 P
ATOM 3 OP1 G A2118 -7.156 -4.742 80.252 1.00 46.71 O
ATOM 4 OP2 G A2118 -8.517 -6.202 78.633 1.00 46.86 O
ATOM 5 O5' G A2118 -9.659 -4.716 80.317 1.00 47.27 O
ATOM 6 C5' G A2118 -9.855 -3.490 80.986 1.00 47.42 C
ATOM 7 C4' G A2118 -11.124 -3.491 81.740 1.00 47.76 C
ATOM 8 O4' G A2118 -12.213 -3.220 80.843 1.00 47.98 O
ATOM 9 C3' G A2118 -11.505 -4.796 82.392 1.00 47.83 C
ATOM 10 O3' G A2118 -10.836 -4.993 83.596 1.00 47.75 O
ATOM 11 C2' G A2118 -12.985 -4.602 82.569 1.00 48.20 C
ATOM 12 O2' G A2118 -13.220 -3.648 83.593 1.00 48.38 O
ATOM 13 C1' G A2118 -13.329 -3.966 81.226 1.00 48.23 C
ATOM 14 N9 G A2118 -13.529 -4.984 80.203 1.00 48.17 N
ATOM 15 C8 G A2118 -12.565 -5.544 79.399 1.00 47.87 C
ATOM 16 N7 G A2118 -12.996 -6.467 78.606 1.00 47.90 N
ATOM 17 C5 G A2118 -14.360 -6.498 78.923 1.00 48.25 C
ATOM 18 C6 G A2118 -15.417 -7.292 78.376 1.00 48.47 C
ATOM 19 O6 G A2118 -15.258 -8.133 77.474 1.00 48.37 O
ATOM 20 N1 G A2118 -16.682 -7.035 78.965 1.00 48.83 N
ATOM 21 C2 G A2118 -16.882 -6.097 79.971 1.00 48.96 C
ATOM 22 N2 G A2118 -18.123 -5.959 80.456 1.00 49.32 N
ATOM 23 N3 G A2118 -15.914 -5.327 80.492 1.00 48.77 N
ATOM 24 C4 G A2118 -14.699 -5.584 79.916 1.00 48.42 C
ATOM 25 P A A2119 -10.556 -6.445 84.148 1.00 49.56 P
ATOM 26 OP1 A A2119 -9.557 -6.300 85.186 1.00 49.42 O
ATOM 27 OP2 A A2119 -10.258 -7.301 83.018 1.00 49.37 O
ATOM 28 O5' A A2119 -11.936 -6.846 84.790 1.00 49.92 O
TER
ATOM 1 O3' G B2080 -19.129 -10.301 79.250 1.00 58.63 O
ATOM 2 P U B2081 -19.832 -9.292 78.220 1.00 59.25 P
ATOM 3 OP1 U B2081 -20.404 -10.111 77.120 1.00 59.36 O
ATOM 4 OP2 U B2081 -18.823 -8.240 77.890 1.00 58.99 O
ATOM 5 O5' U B2081 -21.018 -8.676 79.091 1.00 59.63 O
ATOM 6 C5' U B2081 -22.151 -9.459 79.402 1.00 59.94 C
ATOM 7 C4' U B2081 -22.579 -9.262 80.824 1.00 60.13 C
ATOM 8 O4' U B2081 -21.585 -9.812 81.715 1.00 59.88 O
ATOM 9 C3' U B2081 -22.707 -7.831 81.262 1.00 60.23 C
ATOM 10 O3' U B2081 -23.920 -7.238 80.859 1.00 60.59 O
ATOM 11 C2' U B2081 -22.515 -7.901 82.776 1.00 60.26 C
ATOM 12 O2' U B2081 -23.724 -8.228 83.423 1.00 60.64 O
ATOM 13 C1' U B2081 -21.558 -9.081 82.920 1.00 59.97 C
ATOM 14 N1 U B2081 -20.170 -8.657 83.181 1.00 59.61 N
ATOM 15 C2 U B2081 -19.813 -7.914 84.299 1.00 59.61 C
ATOM 16 O2 U B2081 -20.539 -7.495 85.172 1.00 59.89 O
ATOM 17 N3 U B2081 -18.504 -7.629 84.392 1.00 59.28 N
ATOM 18 C4 U B2081 -17.517 -8.006 83.544 1.00 58.94 C
ATOM 19 O4 U B2081 -16.385 -7.656 83.819 1.00 58.68 O
ATOM 20 C5 U B2081 -17.909 -8.785 82.425 1.00 58.95 C
ATOM 21 C6 U B2081 -19.204 -9.077 82.300 1.00 59.28 C
ATOM 22 P A B2082 -23.884 -5.779 80.195 1.00 63.84 P
ATOM 23 OP1 A B2082 -25.255 -5.469 79.659 1.00 64.24 O
ATOM 24 OP2 A B2082 -22.702 -5.767 79.247 1.00 63.46 O
ATOM 25 O5' A B2082 -23.603 -4.852 81.447 1.00 63.87 O
TER
ATOM 2 P G A2118 -8.366 -4.947 79.427 1.00 46.92 P
ATOM 3 OP1 G A2118 -7.156 -4.742 80.252 1.00 46.71 O
ATOM 4 OP2 G A2118 -8.517 -6.202 78.633 1.00 46.86 O
ATOM 5 O5' G A2118 -9.659 -4.716 80.317 1.00 47.27 O
ATOM 6 C5' G A2118 -9.855 -3.490 80.986 1.00 47.42 C
ATOM 7 C4' G A2118 -11.124 -3.491 81.740 1.00 47.76 C
ATOM 8 O4' G A2118 -12.213 -3.220 80.843 1.00 47.98 O
ATOM 9 C3' G A2118 -11.505 -4.796 82.392 1.00 47.83 C
ATOM 10 O3' G A2118 -10.836 -4.993 83.596 1.00 47.75 O
ATOM 11 C2' G A2118 -12.985 -4.602 82.569 1.00 48.20 C
ATOM 12 O2' G A2118 -13.220 -3.648 83.593 1.00 48.38 O
ATOM 13 C1' G A2118 -13.329 -3.966 81.226 1.00 48.23 C
ATOM 14 N9 G A2118 -13.529 -4.984 80.203 1.00 48.17 N
ATOM 15 C8 G A2118 -12.565 -5.544 79.399 1.00 47.87 C
ATOM 16 N7 G A2118 -12.996 -6.467 78.606 1.00 47.90 N
ATOM 17 C5 G A2118 -14.360 -6.498 78.923 1.00 48.25 C
ATOM 18 C6 G A2118 -15.417 -7.292 78.376 1.00 48.47 C
ATOM 19 O6 G A2118 -15.258 -8.133 77.474 1.00 48.37 O
ATOM 20 N1 G A2118 -16.682 -7.035 78.965 1.00 48.83 N
ATOM 21 C2 G A2118 -16.882 -6.097 79.971 1.00 48.96 C
ATOM 22 N2 G A2118 -18.123 -5.959 80.456 1.00 49.32 N
ATOM 23 N3 G A2118 -15.914 -5.327 80.492 1.00 48.77 N
ATOM 24 C4 G A2118 -14.699 -5.584 79.916 1.00 48.42 C
ATOM 25 P A A2119 -10.556 -6.445 84.148 1.00 49.56 P
ATOM 26 OP1 A A2119 -9.557 -6.300 85.186 1.00 49.42 O
ATOM 27 OP2 A A2119 -10.258 -7.301 83.018 1.00 49.37 O
ATOM 28 O5' A A2119 -11.936 -6.846 84.790 1.00 49.92 O
TER
ATOM 1 O3' G B2080 -19.129 -10.301 79.250 1.00 58.63 O
ATOM 2 P U B2081 -19.832 -9.292 78.220 1.00 59.25 P
ATOM 3 OP1 U B2081 -20.404 -10.111 77.120 1.00 59.36 O
ATOM 4 OP2 U B2081 -18.823 -8.240 77.890 1.00 58.99 O
ATOM 5 O5' U B2081 -21.018 -8.676 79.091 1.00 59.63 O
ATOM 6 C5' U B2081 -22.151 -9.459 79.402 1.00 59.94 C
ATOM 7 C4' U B2081 -22.579 -9.262 80.824 1.00 60.13 C
ATOM 8 O4' U B2081 -21.585 -9.812 81.715 1.00 59.88 O
ATOM 9 C3' U B2081 -22.707 -7.831 81.262 1.00 60.23 C
ATOM 10 O3' U B2081 -23.920 -7.238 80.859 1.00 60.59 O
ATOM 11 C2' U B2081 -22.515 -7.901 82.776 1.00 60.26 C
ATOM 12 O2' U B2081 -23.724 -8.228 83.423 1.00 60.64 O
ATOM 13 C1' U B2081 -21.558 -9.081 82.920 1.00 59.97 C
ATOM 14 N1 U B2081 -20.170 -8.657 83.181 1.00 59.61 N
ATOM 15 C2 U B2081 -19.813 -7.914 84.299 1.00 59.61 C
ATOM 16 O2 U B2081 -20.539 -7.495 85.172 1.00 59.89 O
ATOM 17 N3 U B2081 -18.504 -7.629 84.392 1.00 59.28 N
ATOM 18 C4 U B2081 -17.517 -8.006 83.544 1.00 58.94 C
ATOM 19 O4 U B2081 -16.385 -7.656 83.819 1.00 58.68 O
ATOM 20 C5 U B2081 -17.909 -8.785 82.425 1.00 58.95 C
ATOM 21 C6 U B2081 -19.204 -9.077 82.300 1.00 59.28 C
ATOM 22 P A B2082 -23.884 -5.779 80.195 1.00 63.84 P
ATOM 23 OP1 A B2082 -25.255 -5.469 79.659 1.00 64.24 O
ATOM 24 OP2 A B2082 -22.702 -5.767 79.247 1.00 63.46 O
ATOM 25 O5' A B2082 -23.603 -4.852 81.447 1.00 63.87 O
TER
Atoms:
OP1: (-7.156,-4.742,80.252)
OP2: (-8.517,-6.202,78.633)
C3': (-11.505,-4.796,82.392)
C1': (-13.329,-3.966,81.226)
C5': (-9.855,-3.490,80.986)
O6: (-15.258,-8.133,77.474)
O4': (-12.213,-3.220,80.843)
C8: (-12.565,-5.544,79.399)
C2: (-16.882,-6.097,79.971)
C6: (-15.417,-7.292,78.376)
C5: (-14.360,-6.498,78.923)
C4: (-14.699,-5.584,79.916)
P: (-8.366,-4.947,79.427)
C4': (-11.124,-3.491,81.740)
C2': (-12.985,-4.602,82.569)
O2': (-13.220,-3.648,83.593)
N1: (-16.682,-7.035,78.965)
N2: (-18.123,-5.959,80.456)
N3: (-15.914,-5.327,80.492)
N7: (-12.996,-6.467,78.606)
N9: (-13.529,-4.984,80.203)
O5': (-9.659,-4.716,80.317)
O3': (-10.836,-4.993,83.596)
OP2: (-8.517,-6.202,78.633)
C3': (-11.505,-4.796,82.392)
C1': (-13.329,-3.966,81.226)
C5': (-9.855,-3.490,80.986)
O6: (-15.258,-8.133,77.474)
O4': (-12.213,-3.220,80.843)
C8: (-12.565,-5.544,79.399)
C2: (-16.882,-6.097,79.971)
C6: (-15.417,-7.292,78.376)
C5: (-14.360,-6.498,78.923)
C4: (-14.699,-5.584,79.916)
P: (-8.366,-4.947,79.427)
C4': (-11.124,-3.491,81.740)
C2': (-12.985,-4.602,82.569)
O2': (-13.220,-3.648,83.593)
N1: (-16.682,-7.035,78.965)
N2: (-18.123,-5.959,80.456)
N3: (-15.914,-5.327,80.492)
N7: (-12.996,-6.467,78.606)
N9: (-13.529,-4.984,80.203)
O5': (-9.659,-4.716,80.317)
O3': (-10.836,-4.993,83.596)
C4: (-17.517,-8.006,83.544)
N3: (-18.504,-7.629,84.392)
OP1: (-20.404,-10.111,77.120)
OP2: (-18.823,-8.240,77.890)
C2: (-19.813,-7.914,84.299)
C1': (-21.558,-9.081,82.920)
C3': (-22.707,-7.831,81.262)
O5': (-21.018,-8.676,79.091)
O4': (-21.585,-9.812,81.715)
C5': (-22.151,-9.459,79.402)
P: (-19.832,-9.292,78.220)
C4': (-22.579,-9.262,80.824)
C2': (-22.515,-7.901,82.776)
O2': (-23.724,-8.228,83.423)
N1: (-20.170,-8.657,83.181)
O4: (-16.385,-7.656,83.819)
O2: (-20.539,-7.495,85.172)
C6: (-19.204,-9.077,82.300)
C5: (-17.909,-8.785,82.425)
O3': (-23.920,-7.238,80.859)
N3: (-18.504,-7.629,84.392)
OP1: (-20.404,-10.111,77.120)
OP2: (-18.823,-8.240,77.890)
C2: (-19.813,-7.914,84.299)
C1': (-21.558,-9.081,82.920)
C3': (-22.707,-7.831,81.262)
O5': (-21.018,-8.676,79.091)
O4': (-21.585,-9.812,81.715)
C5': (-22.151,-9.459,79.402)
P: (-19.832,-9.292,78.220)
C4': (-22.579,-9.262,80.824)
C2': (-22.515,-7.901,82.776)
O2': (-23.724,-8.228,83.423)
N1: (-20.170,-8.657,83.181)
O4: (-16.385,-7.656,83.819)
O2: (-20.539,-7.495,85.172)
C6: (-19.204,-9.077,82.300)
C5: (-17.909,-8.785,82.425)
O3': (-23.920,-7.238,80.859)
Image (generated by PyMOL):