Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1JBR:F1:C11
Extra
PDB:
ATOM 1 P G A 1 19.863 3.006 6.873 1.00 52.41 P
ATOM 2 OP1 G A 1 20.635 3.626 7.983 1.00 53.46 O
ATOM 3 OP2 G A 1 18.938 3.835 6.058 1.00 53.36 O
ATOM 4 O5' G A 1 20.857 2.285 5.866 1.00 50.55 O
ATOM 5 C5' G A 1 21.822 1.354 6.334 1.00 46.29 C
ATOM 6 C4' G A 1 22.466 0.657 5.171 1.00 44.04 C
ATOM 7 O4' G A 1 21.561 -0.366 4.673 1.00 41.76 O
ATOM 8 C3' G A 1 22.728 1.532 3.959 1.00 44.69 C
ATOM 9 O3' G A 1 23.919 2.299 4.087 1.00 44.96 O
ATOM 10 C2' G A 1 22.794 0.496 2.849 1.00 43.39 C
ATOM 11 O2' G A 1 24.014 -0.220 2.864 1.00 46.06 O
ATOM 12 C1' G A 1 21.636 -0.419 3.255 1.00 44.03 C
ATOM 13 N9 G A 1 20.344 0.005 2.726 1.00 43.28 N
ATOM 14 C8 G A 1 19.435 0.815 3.361 1.00 44.32 C
ATOM 15 N7 G A 1 18.367 1.038 2.650 1.00 44.91 N
ATOM 16 C5 G A 1 18.577 0.333 1.476 1.00 43.68 C
ATOM 17 C6 G A 1 17.751 0.202 0.324 1.00 45.86 C
ATOM 18 O6 G A 1 16.634 0.697 0.114 1.00 49.67 O
ATOM 19 N1 G A 1 18.339 -0.603 -0.639 1.00 43.09 N
ATOM 20 C2 G A 1 19.560 -1.214 -0.517 1.00 42.63 C
ATOM 21 N2 G A 1 19.937 -1.960 -1.570 1.00 44.18 N
ATOM 22 N3 G A 1 20.346 -1.103 0.554 1.00 42.60 N
ATOM 23 C4 G A 1 19.792 -0.316 1.505 1.00 43.20 C
ATOM 24 P A A 2 24.115 3.617 3.185 1.00 46.69 P
ATOM 25 OP1 A A 2 25.178 4.456 3.802 1.00 49.70 O
ATOM 26 OP2 A A 2 22.774 4.203 2.933 1.00 47.82 O
ATOM 27 O5' A A 2 24.665 3.053 1.803 1.00 45.38 O
TER
ATOM 1 O3' G B 10 17.636 0.528 -4.442 1.00 65.07 O
ATOM 2 P U B 11 16.939 -0.914 -4.395 1.00 65.11 P
ATOM 3 OP1 U B 11 15.789 -0.832 -5.332 1.00 65.78 O
ATOM 4 OP2 U B 11 16.705 -1.272 -2.976 1.00 64.03 O
ATOM 5 O5' U B 11 18.010 -1.928 -4.987 1.00 61.54 O
ATOM 6 C5' U B 11 18.213 -2.022 -6.383 1.00 63.71 C
ATOM 7 C4' U B 11 19.684 -2.130 -6.683 1.00 65.82 C
ATOM 8 O4' U B 11 20.369 -0.912 -6.293 1.00 65.34 O
ATOM 9 C3' U B 11 20.416 -3.219 -5.926 1.00 65.29 C
ATOM 10 O3' U B 11 20.225 -4.452 -6.597 1.00 68.38 O
ATOM 11 C2' U B 11 21.864 -2.744 -5.994 1.00 65.27 C
ATOM 12 O2' U B 11 22.526 -3.094 -7.195 1.00 66.79 O
ATOM 13 C1' U B 11 21.697 -1.224 -5.902 1.00 63.20 C
ATOM 14 N1 U B 11 21.956 -0.645 -4.571 1.00 59.16 N
ATOM 15 C2 U B 11 23.232 -0.764 -4.053 1.00 55.74 C
ATOM 16 O2 U B 11 24.133 -1.348 -4.633 1.00 53.48 O
ATOM 17 N3 U B 11 23.419 -0.169 -2.833 1.00 53.58 N
ATOM 18 C4 U B 11 22.490 0.517 -2.090 1.00 54.10 C
ATOM 19 O4 U B 11 22.822 1.009 -1.013 1.00 54.11 O
ATOM 20 C5 U B 11 21.190 0.589 -2.679 1.00 55.94 C
ATOM 21 C6 U B 11 20.970 0.017 -3.864 1.00 58.37 C
ATOM 22 P A B 12 19.507 -5.673 -5.836 1.00 70.30 P
ATOM 23 OP1 A B 12 18.558 -6.296 -6.801 1.00 71.64 O
ATOM 24 OP2 A B 12 19.004 -5.214 -4.513 1.00 71.63 O
ATOM 25 O5' A B 12 20.703 -6.688 -5.574 1.00 66.40 O
TER
ATOM 2 OP1 G A 1 20.635 3.626 7.983 1.00 53.46 O
ATOM 3 OP2 G A 1 18.938 3.835 6.058 1.00 53.36 O
ATOM 4 O5' G A 1 20.857 2.285 5.866 1.00 50.55 O
ATOM 5 C5' G A 1 21.822 1.354 6.334 1.00 46.29 C
ATOM 6 C4' G A 1 22.466 0.657 5.171 1.00 44.04 C
ATOM 7 O4' G A 1 21.561 -0.366 4.673 1.00 41.76 O
ATOM 8 C3' G A 1 22.728 1.532 3.959 1.00 44.69 C
ATOM 9 O3' G A 1 23.919 2.299 4.087 1.00 44.96 O
ATOM 10 C2' G A 1 22.794 0.496 2.849 1.00 43.39 C
ATOM 11 O2' G A 1 24.014 -0.220 2.864 1.00 46.06 O
ATOM 12 C1' G A 1 21.636 -0.419 3.255 1.00 44.03 C
ATOM 13 N9 G A 1 20.344 0.005 2.726 1.00 43.28 N
ATOM 14 C8 G A 1 19.435 0.815 3.361 1.00 44.32 C
ATOM 15 N7 G A 1 18.367 1.038 2.650 1.00 44.91 N
ATOM 16 C5 G A 1 18.577 0.333 1.476 1.00 43.68 C
ATOM 17 C6 G A 1 17.751 0.202 0.324 1.00 45.86 C
ATOM 18 O6 G A 1 16.634 0.697 0.114 1.00 49.67 O
ATOM 19 N1 G A 1 18.339 -0.603 -0.639 1.00 43.09 N
ATOM 20 C2 G A 1 19.560 -1.214 -0.517 1.00 42.63 C
ATOM 21 N2 G A 1 19.937 -1.960 -1.570 1.00 44.18 N
ATOM 22 N3 G A 1 20.346 -1.103 0.554 1.00 42.60 N
ATOM 23 C4 G A 1 19.792 -0.316 1.505 1.00 43.20 C
ATOM 24 P A A 2 24.115 3.617 3.185 1.00 46.69 P
ATOM 25 OP1 A A 2 25.178 4.456 3.802 1.00 49.70 O
ATOM 26 OP2 A A 2 22.774 4.203 2.933 1.00 47.82 O
ATOM 27 O5' A A 2 24.665 3.053 1.803 1.00 45.38 O
TER
ATOM 1 O3' G B 10 17.636 0.528 -4.442 1.00 65.07 O
ATOM 2 P U B 11 16.939 -0.914 -4.395 1.00 65.11 P
ATOM 3 OP1 U B 11 15.789 -0.832 -5.332 1.00 65.78 O
ATOM 4 OP2 U B 11 16.705 -1.272 -2.976 1.00 64.03 O
ATOM 5 O5' U B 11 18.010 -1.928 -4.987 1.00 61.54 O
ATOM 6 C5' U B 11 18.213 -2.022 -6.383 1.00 63.71 C
ATOM 7 C4' U B 11 19.684 -2.130 -6.683 1.00 65.82 C
ATOM 8 O4' U B 11 20.369 -0.912 -6.293 1.00 65.34 O
ATOM 9 C3' U B 11 20.416 -3.219 -5.926 1.00 65.29 C
ATOM 10 O3' U B 11 20.225 -4.452 -6.597 1.00 68.38 O
ATOM 11 C2' U B 11 21.864 -2.744 -5.994 1.00 65.27 C
ATOM 12 O2' U B 11 22.526 -3.094 -7.195 1.00 66.79 O
ATOM 13 C1' U B 11 21.697 -1.224 -5.902 1.00 63.20 C
ATOM 14 N1 U B 11 21.956 -0.645 -4.571 1.00 59.16 N
ATOM 15 C2 U B 11 23.232 -0.764 -4.053 1.00 55.74 C
ATOM 16 O2 U B 11 24.133 -1.348 -4.633 1.00 53.48 O
ATOM 17 N3 U B 11 23.419 -0.169 -2.833 1.00 53.58 N
ATOM 18 C4 U B 11 22.490 0.517 -2.090 1.00 54.10 C
ATOM 19 O4 U B 11 22.822 1.009 -1.013 1.00 54.11 O
ATOM 20 C5 U B 11 21.190 0.589 -2.679 1.00 55.94 C
ATOM 21 C6 U B 11 20.970 0.017 -3.864 1.00 58.37 C
ATOM 22 P A B 12 19.507 -5.673 -5.836 1.00 70.30 P
ATOM 23 OP1 A B 12 18.558 -6.296 -6.801 1.00 71.64 O
ATOM 24 OP2 A B 12 19.004 -5.214 -4.513 1.00 71.63 O
ATOM 25 O5' A B 12 20.703 -6.688 -5.574 1.00 66.40 O
TER
Atoms:
OP1: (20.635,3.626,7.983)
OP2: (18.938,3.835,6.058)
C3': (22.728,1.532,3.959)
C1': (21.636,-0.419,3.255)
C5': (21.822,1.354,6.334)
O6: (16.634,0.697,0.114)
O4': (21.561,-0.366,4.673)
C8: (19.435,0.815,3.361)
C2: (19.560,-1.214,-0.517)
C6: (17.751,0.202,0.324)
C5: (18.577,0.333,1.476)
C4: (19.792,-0.316,1.505)
P: (19.863,3.006,6.873)
C4': (22.466,0.657,5.171)
C2': (22.794,0.496,2.849)
O2': (24.014,-0.220,2.864)
N1: (18.339,-0.603,-0.639)
N2: (19.937,-1.960,-1.570)
N3: (20.346,-1.103,0.554)
N7: (18.367,1.038,2.650)
N9: (20.344,0.005,2.726)
O5': (20.857,2.285,5.866)
O3': (23.919,2.299,4.087)
OP2: (18.938,3.835,6.058)
C3': (22.728,1.532,3.959)
C1': (21.636,-0.419,3.255)
C5': (21.822,1.354,6.334)
O6: (16.634,0.697,0.114)
O4': (21.561,-0.366,4.673)
C8: (19.435,0.815,3.361)
C2: (19.560,-1.214,-0.517)
C6: (17.751,0.202,0.324)
C5: (18.577,0.333,1.476)
C4: (19.792,-0.316,1.505)
P: (19.863,3.006,6.873)
C4': (22.466,0.657,5.171)
C2': (22.794,0.496,2.849)
O2': (24.014,-0.220,2.864)
N1: (18.339,-0.603,-0.639)
N2: (19.937,-1.960,-1.570)
N3: (20.346,-1.103,0.554)
N7: (18.367,1.038,2.650)
N9: (20.344,0.005,2.726)
O5': (20.857,2.285,5.866)
O3': (23.919,2.299,4.087)
C4: (22.490,0.517,-2.090)
N3: (23.419,-0.169,-2.833)
OP1: (15.789,-0.832,-5.332)
OP2: (16.705,-1.272,-2.976)
C2: (23.232,-0.764,-4.053)
C1': (21.697,-1.224,-5.902)
C3': (20.416,-3.219,-5.926)
O5': (18.010,-1.928,-4.987)
O4': (20.369,-0.912,-6.293)
C5': (18.213,-2.022,-6.383)
P: (16.939,-0.914,-4.395)
C4': (19.684,-2.130,-6.683)
C2': (21.864,-2.744,-5.994)
O2': (22.526,-3.094,-7.195)
N1: (21.956,-0.645,-4.571)
O4: (22.822,1.009,-1.013)
O2: (24.133,-1.348,-4.633)
C6: (20.970,0.017,-3.864)
C5: (21.190,0.589,-2.679)
O3': (20.225,-4.452,-6.597)
N3: (23.419,-0.169,-2.833)
OP1: (15.789,-0.832,-5.332)
OP2: (16.705,-1.272,-2.976)
C2: (23.232,-0.764,-4.053)
C1': (21.697,-1.224,-5.902)
C3': (20.416,-3.219,-5.926)
O5': (18.010,-1.928,-4.987)
O4': (20.369,-0.912,-6.293)
C5': (18.213,-2.022,-6.383)
P: (16.939,-0.914,-4.395)
C4': (19.684,-2.130,-6.683)
C2': (21.864,-2.744,-5.994)
O2': (22.526,-3.094,-7.195)
N1: (21.956,-0.645,-4.571)
O4: (22.822,1.009,-1.013)
O2: (24.133,-1.348,-4.633)
C6: (20.970,0.017,-3.864)
C5: (21.190,0.589,-2.679)
O3': (20.225,-4.452,-6.597)
Image (generated by PyMOL):