Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0280:0347
Extra
PDB:
ATOM 1 O3' C A 279 55.395 128.816 -1.847 1.00 67.06 O
ATOM 2 P G A 280 54.721 129.578 -0.609 1.00 68.01 P
ATOM 3 OP1 G A 280 53.687 130.504 -1.148 1.00 67.86 O
ATOM 4 OP2 G A 280 55.811 130.116 0.247 1.00 67.82 O
ATOM 5 O5' G A 280 53.972 128.411 0.174 1.00 67.63 O
ATOM 6 C5' G A 280 52.827 127.746 -0.403 1.00 66.94 C
ATOM 7 C4' G A 280 52.418 126.575 0.457 1.00 66.34 C
ATOM 8 O4' G A 280 53.471 125.572 0.438 1.00 66.26 O
ATOM 9 C3' G A 280 52.241 126.900 1.930 1.00 65.55 C
ATOM 10 O3' G A 280 50.968 127.460 2.218 1.00 65.80 O
ATOM 11 C2' G A 280 52.483 125.554 2.593 1.00 64.97 C
ATOM 12 O2' G A 280 51.369 124.688 2.503 1.00 64.51 O
ATOM 13 C1' G A 280 53.627 125.014 1.733 1.00 64.25 C
ATOM 14 N9 G A 280 54.944 125.405 2.228 1.00 63.17 N
ATOM 15 C8 G A 280 55.631 126.560 1.930 1.00 62.25 C
ATOM 16 N7 G A 280 56.797 126.628 2.512 1.00 62.50 N
ATOM 17 C5 G A 280 56.888 125.450 3.241 1.00 63.09 C
ATOM 18 C6 G A 280 57.932 124.959 4.071 1.00 63.03 C
ATOM 19 O6 G A 280 59.026 125.479 4.323 1.00 63.10 O
ATOM 20 N1 G A 280 57.604 123.726 4.630 1.00 62.54 N
ATOM 21 C2 G A 280 56.429 123.046 4.411 1.00 62.17 C
ATOM 22 N2 G A 280 56.297 121.872 5.043 1.00 61.49 N
ATOM 23 N3 G A 280 55.455 123.485 3.630 1.00 62.71 N
ATOM 24 C4 G A 280 55.749 124.686 3.082 1.00 63.32 C
ATOM 25 P A A 281 50.757 128.280 3.583 1.00 66.83 P
ATOM 26 OP1 A A 281 49.459 128.992 3.481 1.00 67.30 O
ATOM 27 OP2 A A 281 51.995 129.055 3.863 1.00 66.25 O
ATOM 28 O5' A A 281 50.633 127.129 4.680 1.00 66.86 O
TER
ATOM 1 O3' G B 346 58.735 123.353 8.466 1.00 64.25 O
ATOM 2 P U B 347 59.658 122.268 7.716 1.00 65.98 P
ATOM 3 OP1 U B 347 60.974 122.176 8.403 1.00 66.08 O
ATOM 4 OP2 U B 347 59.609 122.576 6.262 1.00 66.29 O
ATOM 5 O5' U B 347 58.868 120.899 7.920 1.00 64.70 O
ATOM 6 C5' U B 347 58.970 120.146 9.145 1.00 62.15 C
ATOM 7 C4' U B 347 57.632 119.537 9.498 1.00 62.07 C
ATOM 8 O4' U B 347 56.695 120.596 9.812 1.00 61.28 O
ATOM 9 C3' U B 347 56.934 118.750 8.401 1.00 63.04 C
ATOM 10 O3' U B 347 57.438 117.418 8.321 1.00 67.69 O
ATOM 11 C2' U B 347 55.477 118.785 8.851 1.00 61.73 C
ATOM 12 O2' U B 347 55.178 117.827 9.845 1.00 61.37 O
ATOM 13 C1' U B 347 55.384 120.177 9.482 1.00 60.22 C
ATOM 14 N1 U B 347 54.733 121.219 8.671 1.00 58.35 N
ATOM 15 C2 U B 347 53.366 121.111 8.460 1.00 58.26 C
ATOM 16 O2 U B 347 52.696 120.184 8.887 1.00 58.70 O
ATOM 17 N3 U B 347 52.809 122.133 7.731 1.00 57.50 N
ATOM 18 C4 U B 347 53.457 123.228 7.202 1.00 57.25 C
ATOM 19 O4 U B 347 52.800 124.099 6.629 1.00 55.56 O
ATOM 20 C5 U B 347 54.869 123.261 7.446 1.00 58.09 C
ATOM 21 C6 U B 347 55.445 122.279 8.150 1.00 57.98 C
ATOM 22 P A B 348 57.594 116.699 6.887 1.00 70.88 P
ATOM 23 OP1 A B 348 58.319 115.417 7.110 1.00 70.98 O
ATOM 24 OP2 A B 348 58.134 117.682 5.911 1.00 70.46 O
ATOM 25 O5' A B 348 56.097 116.359 6.463 1.00 70.78 O
TER
ATOM 2 P G A 280 54.721 129.578 -0.609 1.00 68.01 P
ATOM 3 OP1 G A 280 53.687 130.504 -1.148 1.00 67.86 O
ATOM 4 OP2 G A 280 55.811 130.116 0.247 1.00 67.82 O
ATOM 5 O5' G A 280 53.972 128.411 0.174 1.00 67.63 O
ATOM 6 C5' G A 280 52.827 127.746 -0.403 1.00 66.94 C
ATOM 7 C4' G A 280 52.418 126.575 0.457 1.00 66.34 C
ATOM 8 O4' G A 280 53.471 125.572 0.438 1.00 66.26 O
ATOM 9 C3' G A 280 52.241 126.900 1.930 1.00 65.55 C
ATOM 10 O3' G A 280 50.968 127.460 2.218 1.00 65.80 O
ATOM 11 C2' G A 280 52.483 125.554 2.593 1.00 64.97 C
ATOM 12 O2' G A 280 51.369 124.688 2.503 1.00 64.51 O
ATOM 13 C1' G A 280 53.627 125.014 1.733 1.00 64.25 C
ATOM 14 N9 G A 280 54.944 125.405 2.228 1.00 63.17 N
ATOM 15 C8 G A 280 55.631 126.560 1.930 1.00 62.25 C
ATOM 16 N7 G A 280 56.797 126.628 2.512 1.00 62.50 N
ATOM 17 C5 G A 280 56.888 125.450 3.241 1.00 63.09 C
ATOM 18 C6 G A 280 57.932 124.959 4.071 1.00 63.03 C
ATOM 19 O6 G A 280 59.026 125.479 4.323 1.00 63.10 O
ATOM 20 N1 G A 280 57.604 123.726 4.630 1.00 62.54 N
ATOM 21 C2 G A 280 56.429 123.046 4.411 1.00 62.17 C
ATOM 22 N2 G A 280 56.297 121.872 5.043 1.00 61.49 N
ATOM 23 N3 G A 280 55.455 123.485 3.630 1.00 62.71 N
ATOM 24 C4 G A 280 55.749 124.686 3.082 1.00 63.32 C
ATOM 25 P A A 281 50.757 128.280 3.583 1.00 66.83 P
ATOM 26 OP1 A A 281 49.459 128.992 3.481 1.00 67.30 O
ATOM 27 OP2 A A 281 51.995 129.055 3.863 1.00 66.25 O
ATOM 28 O5' A A 281 50.633 127.129 4.680 1.00 66.86 O
TER
ATOM 1 O3' G B 346 58.735 123.353 8.466 1.00 64.25 O
ATOM 2 P U B 347 59.658 122.268 7.716 1.00 65.98 P
ATOM 3 OP1 U B 347 60.974 122.176 8.403 1.00 66.08 O
ATOM 4 OP2 U B 347 59.609 122.576 6.262 1.00 66.29 O
ATOM 5 O5' U B 347 58.868 120.899 7.920 1.00 64.70 O
ATOM 6 C5' U B 347 58.970 120.146 9.145 1.00 62.15 C
ATOM 7 C4' U B 347 57.632 119.537 9.498 1.00 62.07 C
ATOM 8 O4' U B 347 56.695 120.596 9.812 1.00 61.28 O
ATOM 9 C3' U B 347 56.934 118.750 8.401 1.00 63.04 C
ATOM 10 O3' U B 347 57.438 117.418 8.321 1.00 67.69 O
ATOM 11 C2' U B 347 55.477 118.785 8.851 1.00 61.73 C
ATOM 12 O2' U B 347 55.178 117.827 9.845 1.00 61.37 O
ATOM 13 C1' U B 347 55.384 120.177 9.482 1.00 60.22 C
ATOM 14 N1 U B 347 54.733 121.219 8.671 1.00 58.35 N
ATOM 15 C2 U B 347 53.366 121.111 8.460 1.00 58.26 C
ATOM 16 O2 U B 347 52.696 120.184 8.887 1.00 58.70 O
ATOM 17 N3 U B 347 52.809 122.133 7.731 1.00 57.50 N
ATOM 18 C4 U B 347 53.457 123.228 7.202 1.00 57.25 C
ATOM 19 O4 U B 347 52.800 124.099 6.629 1.00 55.56 O
ATOM 20 C5 U B 347 54.869 123.261 7.446 1.00 58.09 C
ATOM 21 C6 U B 347 55.445 122.279 8.150 1.00 57.98 C
ATOM 22 P A B 348 57.594 116.699 6.887 1.00 70.88 P
ATOM 23 OP1 A B 348 58.319 115.417 7.110 1.00 70.98 O
ATOM 24 OP2 A B 348 58.134 117.682 5.911 1.00 70.46 O
ATOM 25 O5' A B 348 56.097 116.359 6.463 1.00 70.78 O
TER
Atoms:
OP1: (53.687,130.504,-1.148)
OP2: (55.811,130.116,0.247)
C3': (52.241,126.900,1.930)
C1': (53.627,125.014,1.733)
C5': (52.827,127.746,-0.403)
O6: (59.026,125.479,4.323)
O4': (53.471,125.572,0.438)
C8: (55.631,126.560,1.930)
C2: (56.429,123.046,4.411)
C6: (57.932,124.959,4.071)
C5: (56.888,125.450,3.241)
C4: (55.749,124.686,3.082)
P: (54.721,129.578,-0.609)
C4': (52.418,126.575,0.457)
C2': (52.483,125.554,2.593)
O2': (51.369,124.688,2.503)
N1: (57.604,123.726,4.630)
N2: (56.297,121.872,5.043)
N3: (55.455,123.485,3.630)
N7: (56.797,126.628,2.512)
N9: (54.944,125.405,2.228)
O5': (53.972,128.411,0.174)
O3': (50.968,127.460,2.218)
OP2: (55.811,130.116,0.247)
C3': (52.241,126.900,1.930)
C1': (53.627,125.014,1.733)
C5': (52.827,127.746,-0.403)
O6: (59.026,125.479,4.323)
O4': (53.471,125.572,0.438)
C8: (55.631,126.560,1.930)
C2: (56.429,123.046,4.411)
C6: (57.932,124.959,4.071)
C5: (56.888,125.450,3.241)
C4: (55.749,124.686,3.082)
P: (54.721,129.578,-0.609)
C4': (52.418,126.575,0.457)
C2': (52.483,125.554,2.593)
O2': (51.369,124.688,2.503)
N1: (57.604,123.726,4.630)
N2: (56.297,121.872,5.043)
N3: (55.455,123.485,3.630)
N7: (56.797,126.628,2.512)
N9: (54.944,125.405,2.228)
O5': (53.972,128.411,0.174)
O3': (50.968,127.460,2.218)
C4: (53.457,123.228,7.202)
N3: (52.809,122.133,7.731)
OP1: (60.974,122.176,8.403)
OP2: (59.609,122.576,6.262)
C2: (53.366,121.111,8.460)
C1': (55.384,120.177,9.482)
C3': (56.934,118.750,8.401)
O5': (58.868,120.899,7.920)
O4': (56.695,120.596,9.812)
C5': (58.970,120.146,9.145)
P: (59.658,122.268,7.716)
C4': (57.632,119.537,9.498)
C2': (55.477,118.785,8.851)
O2': (55.178,117.827,9.845)
N1: (54.733,121.219,8.671)
O4: (52.800,124.099,6.629)
O2: (52.696,120.184,8.887)
C6: (55.445,122.279,8.150)
C5: (54.869,123.261,7.446)
O3': (57.438,117.418,8.321)
N3: (52.809,122.133,7.731)
OP1: (60.974,122.176,8.403)
OP2: (59.609,122.576,6.262)
C2: (53.366,121.111,8.460)
C1': (55.384,120.177,9.482)
C3': (56.934,118.750,8.401)
O5': (58.868,120.899,7.920)
O4': (56.695,120.596,9.812)
C5': (58.970,120.146,9.145)
P: (59.658,122.268,7.716)
C4': (57.632,119.537,9.498)
C2': (55.477,118.785,8.851)
O2': (55.178,117.827,9.845)
N1: (54.733,121.219,8.671)
O4: (52.800,124.099,6.629)
O2: (52.696,120.184,8.887)
C6: (55.445,122.279,8.150)
C5: (54.869,123.261,7.446)
O3': (57.438,117.418,8.321)
Image (generated by PyMOL):