Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0556:0577
Extra
PDB:
ATOM 1 O3' U A 555 4.103 93.061 107.770 1.00 44.27 O
ATOM 2 P G A 556 3.526 92.458 109.149 1.00 43.26 P
ATOM 3 OP1 G A 556 4.489 92.825 110.214 1.00 42.53 O
ATOM 4 OP2 G A 556 3.176 91.028 108.950 1.00 42.67 O
ATOM 5 O5' G A 556 2.184 93.280 109.386 1.00 42.06 O
ATOM 6 C5' G A 556 2.227 94.641 109.834 1.00 43.60 C
ATOM 7 C4' G A 556 0.830 95.155 110.055 1.00 45.72 C
ATOM 8 O4' G A 556 0.147 95.260 108.783 1.00 46.36 O
ATOM 9 C3' G A 556 -0.071 94.245 110.871 1.00 46.83 C
ATOM 10 O3' G A 556 0.148 94.376 112.265 1.00 48.81 O
ATOM 11 C2' G A 556 -1.453 94.707 110.448 1.00 46.81 C
ATOM 12 O2' G A 556 -1.843 95.914 111.068 1.00 45.08 O
ATOM 13 C1' G A 556 -1.224 94.945 108.957 1.00 46.66 C
ATOM 14 N9 G A 556 -1.526 93.762 108.160 1.00 47.95 N
ATOM 15 C8 G A 556 -0.660 92.765 107.772 1.00 48.06 C
ATOM 16 N7 G A 556 -1.233 91.851 107.033 1.00 47.89 N
ATOM 17 C5 G A 556 -2.553 92.268 106.937 1.00 47.62 C
ATOM 18 C6 G A 556 -3.649 91.689 106.258 1.00 47.68 C
ATOM 19 O6 G A 556 -3.676 90.662 105.577 1.00 48.26 O
ATOM 20 N1 G A 556 -4.806 92.439 106.427 1.00 48.27 N
ATOM 21 C2 G A 556 -4.898 93.599 107.156 1.00 48.42 C
ATOM 22 N2 G A 556 -6.103 94.183 107.203 1.00 49.62 N
ATOM 23 N3 G A 556 -3.885 94.148 107.791 1.00 47.28 N
ATOM 24 C4 G A 556 -2.751 93.438 107.637 1.00 47.91 C
ATOM 25 P A A 557 -0.248 93.170 113.246 1.00 49.06 P
ATOM 26 OP1 A A 557 0.488 93.416 114.511 1.00 49.35 O
ATOM 27 OP2 A A 557 -0.101 91.858 112.553 1.00 47.31 O
ATOM 28 O5' A A 557 -1.797 93.421 113.495 1.00 49.72 O
TER
ATOM 1 O3' G B 576 -8.141 89.795 106.648 1.00 62.82 O
ATOM 2 P U B 577 -8.396 90.789 105.410 1.00 64.55 P
ATOM 3 OP1 U B 577 -9.022 90.027 104.294 1.00 62.24 O
ATOM 4 OP2 U B 577 -7.155 91.567 105.162 1.00 63.91 O
ATOM 5 O5' U B 577 -9.465 91.807 106.003 1.00 62.90 O
ATOM 6 C5' U B 577 -10.764 91.349 106.422 1.00 62.33 C
ATOM 7 C4' U B 577 -11.173 92.033 107.701 1.00 60.96 C
ATOM 8 O4' U B 577 -10.389 91.526 108.805 1.00 60.27 O
ATOM 9 C3' U B 577 -10.932 93.529 107.731 1.00 62.12 C
ATOM 10 O3' U B 577 -11.984 94.212 107.053 1.00 64.55 O
ATOM 11 C2' U B 577 -10.869 93.824 109.228 1.00 60.92 C
ATOM 12 O2' U B 577 -12.142 93.967 109.827 1.00 60.77 O
ATOM 13 C1' U B 577 -10.197 92.553 109.765 1.00 58.99 C
ATOM 14 N1 U B 577 -8.759 92.640 110.078 1.00 57.10 N
ATOM 15 C2 U B 577 -8.337 93.600 110.991 1.00 56.35 C
ATOM 16 O2 U B 577 -9.096 94.376 111.545 1.00 55.59 O
ATOM 17 N3 U B 577 -6.985 93.614 111.230 1.00 56.08 N
ATOM 18 C4 U B 577 -6.028 92.789 110.671 1.00 56.26 C
ATOM 19 O4 U B 577 -4.845 92.943 110.977 1.00 56.61 O
ATOM 20 C5 U B 577 -6.537 91.825 109.746 1.00 55.34 C
ATOM 21 C6 U B 577 -7.847 91.784 109.485 1.00 56.49 C
ATOM 22 P A B 578 -11.646 95.475 106.118 1.00 65.96 P
ATOM 23 OP1 A B 578 -12.887 95.845 105.390 1.00 66.30 O
ATOM 24 OP2 A B 578 -10.406 95.184 105.348 1.00 65.68 O
ATOM 25 O5' A B 578 -11.337 96.626 107.172 1.00 63.77 O
TER
ATOM 2 P G A 556 3.526 92.458 109.149 1.00 43.26 P
ATOM 3 OP1 G A 556 4.489 92.825 110.214 1.00 42.53 O
ATOM 4 OP2 G A 556 3.176 91.028 108.950 1.00 42.67 O
ATOM 5 O5' G A 556 2.184 93.280 109.386 1.00 42.06 O
ATOM 6 C5' G A 556 2.227 94.641 109.834 1.00 43.60 C
ATOM 7 C4' G A 556 0.830 95.155 110.055 1.00 45.72 C
ATOM 8 O4' G A 556 0.147 95.260 108.783 1.00 46.36 O
ATOM 9 C3' G A 556 -0.071 94.245 110.871 1.00 46.83 C
ATOM 10 O3' G A 556 0.148 94.376 112.265 1.00 48.81 O
ATOM 11 C2' G A 556 -1.453 94.707 110.448 1.00 46.81 C
ATOM 12 O2' G A 556 -1.843 95.914 111.068 1.00 45.08 O
ATOM 13 C1' G A 556 -1.224 94.945 108.957 1.00 46.66 C
ATOM 14 N9 G A 556 -1.526 93.762 108.160 1.00 47.95 N
ATOM 15 C8 G A 556 -0.660 92.765 107.772 1.00 48.06 C
ATOM 16 N7 G A 556 -1.233 91.851 107.033 1.00 47.89 N
ATOM 17 C5 G A 556 -2.553 92.268 106.937 1.00 47.62 C
ATOM 18 C6 G A 556 -3.649 91.689 106.258 1.00 47.68 C
ATOM 19 O6 G A 556 -3.676 90.662 105.577 1.00 48.26 O
ATOM 20 N1 G A 556 -4.806 92.439 106.427 1.00 48.27 N
ATOM 21 C2 G A 556 -4.898 93.599 107.156 1.00 48.42 C
ATOM 22 N2 G A 556 -6.103 94.183 107.203 1.00 49.62 N
ATOM 23 N3 G A 556 -3.885 94.148 107.791 1.00 47.28 N
ATOM 24 C4 G A 556 -2.751 93.438 107.637 1.00 47.91 C
ATOM 25 P A A 557 -0.248 93.170 113.246 1.00 49.06 P
ATOM 26 OP1 A A 557 0.488 93.416 114.511 1.00 49.35 O
ATOM 27 OP2 A A 557 -0.101 91.858 112.553 1.00 47.31 O
ATOM 28 O5' A A 557 -1.797 93.421 113.495 1.00 49.72 O
TER
ATOM 1 O3' G B 576 -8.141 89.795 106.648 1.00 62.82 O
ATOM 2 P U B 577 -8.396 90.789 105.410 1.00 64.55 P
ATOM 3 OP1 U B 577 -9.022 90.027 104.294 1.00 62.24 O
ATOM 4 OP2 U B 577 -7.155 91.567 105.162 1.00 63.91 O
ATOM 5 O5' U B 577 -9.465 91.807 106.003 1.00 62.90 O
ATOM 6 C5' U B 577 -10.764 91.349 106.422 1.00 62.33 C
ATOM 7 C4' U B 577 -11.173 92.033 107.701 1.00 60.96 C
ATOM 8 O4' U B 577 -10.389 91.526 108.805 1.00 60.27 O
ATOM 9 C3' U B 577 -10.932 93.529 107.731 1.00 62.12 C
ATOM 10 O3' U B 577 -11.984 94.212 107.053 1.00 64.55 O
ATOM 11 C2' U B 577 -10.869 93.824 109.228 1.00 60.92 C
ATOM 12 O2' U B 577 -12.142 93.967 109.827 1.00 60.77 O
ATOM 13 C1' U B 577 -10.197 92.553 109.765 1.00 58.99 C
ATOM 14 N1 U B 577 -8.759 92.640 110.078 1.00 57.10 N
ATOM 15 C2 U B 577 -8.337 93.600 110.991 1.00 56.35 C
ATOM 16 O2 U B 577 -9.096 94.376 111.545 1.00 55.59 O
ATOM 17 N3 U B 577 -6.985 93.614 111.230 1.00 56.08 N
ATOM 18 C4 U B 577 -6.028 92.789 110.671 1.00 56.26 C
ATOM 19 O4 U B 577 -4.845 92.943 110.977 1.00 56.61 O
ATOM 20 C5 U B 577 -6.537 91.825 109.746 1.00 55.34 C
ATOM 21 C6 U B 577 -7.847 91.784 109.485 1.00 56.49 C
ATOM 22 P A B 578 -11.646 95.475 106.118 1.00 65.96 P
ATOM 23 OP1 A B 578 -12.887 95.845 105.390 1.00 66.30 O
ATOM 24 OP2 A B 578 -10.406 95.184 105.348 1.00 65.68 O
ATOM 25 O5' A B 578 -11.337 96.626 107.172 1.00 63.77 O
TER
Atoms:
OP1: (4.489,92.825,110.214)
OP2: (3.176,91.028,108.950)
C3': (-0.071,94.245,110.871)
C1': (-1.224,94.945,108.957)
C5': (2.227,94.641,109.834)
O6: (-3.676,90.662,105.577)
O4': (0.147,95.260,108.783)
C8: (-0.660,92.765,107.772)
C2: (-4.898,93.599,107.156)
C6: (-3.649,91.689,106.258)
C5: (-2.553,92.268,106.937)
C4: (-2.751,93.438,107.637)
P: (3.526,92.458,109.149)
C4': (0.830,95.155,110.055)
C2': (-1.453,94.707,110.448)
O2': (-1.843,95.914,111.068)
N1: (-4.806,92.439,106.427)
N2: (-6.103,94.183,107.203)
N3: (-3.885,94.148,107.791)
N7: (-1.233,91.851,107.033)
N9: (-1.526,93.762,108.160)
O5': (2.184,93.280,109.386)
O3': (0.148,94.376,112.265)
OP2: (3.176,91.028,108.950)
C3': (-0.071,94.245,110.871)
C1': (-1.224,94.945,108.957)
C5': (2.227,94.641,109.834)
O6: (-3.676,90.662,105.577)
O4': (0.147,95.260,108.783)
C8: (-0.660,92.765,107.772)
C2: (-4.898,93.599,107.156)
C6: (-3.649,91.689,106.258)
C5: (-2.553,92.268,106.937)
C4: (-2.751,93.438,107.637)
P: (3.526,92.458,109.149)
C4': (0.830,95.155,110.055)
C2': (-1.453,94.707,110.448)
O2': (-1.843,95.914,111.068)
N1: (-4.806,92.439,106.427)
N2: (-6.103,94.183,107.203)
N3: (-3.885,94.148,107.791)
N7: (-1.233,91.851,107.033)
N9: (-1.526,93.762,108.160)
O5': (2.184,93.280,109.386)
O3': (0.148,94.376,112.265)
C4: (-6.028,92.789,110.671)
N3: (-6.985,93.614,111.230)
OP1: (-9.022,90.027,104.294)
OP2: (-7.155,91.567,105.162)
C2: (-8.337,93.600,110.991)
C1': (-10.197,92.553,109.765)
C3': (-10.932,93.529,107.731)
O5': (-9.465,91.807,106.003)
O4': (-10.389,91.526,108.805)
C5': (-10.764,91.349,106.422)
P: (-8.396,90.789,105.410)
C4': (-11.173,92.033,107.701)
C2': (-10.869,93.824,109.228)
O2': (-12.142,93.967,109.827)
N1: (-8.759,92.640,110.078)
O4: (-4.845,92.943,110.977)
O2: (-9.096,94.376,111.545)
C6: (-7.847,91.784,109.485)
C5: (-6.537,91.825,109.746)
O3': (-11.984,94.212,107.053)
N3: (-6.985,93.614,111.230)
OP1: (-9.022,90.027,104.294)
OP2: (-7.155,91.567,105.162)
C2: (-8.337,93.600,110.991)
C1': (-10.197,92.553,109.765)
C3': (-10.932,93.529,107.731)
O5': (-9.465,91.807,106.003)
O4': (-10.389,91.526,108.805)
C5': (-10.764,91.349,106.422)
P: (-8.396,90.789,105.410)
C4': (-11.173,92.033,107.701)
C2': (-10.869,93.824,109.228)
O2': (-12.142,93.967,109.827)
N1: (-8.759,92.640,110.078)
O4: (-4.845,92.943,110.977)
O2: (-9.096,94.376,111.545)
C6: (-7.847,91.784,109.485)
C5: (-6.537,91.825,109.746)
O3': (-11.984,94.212,107.053)
Image (generated by PyMOL):