Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:E14:E9
Extra
PDB:
ATOM 1 O3' A A 13 -11.191 -15.608 17.268 1.00 17.67 O
ATOM 2 P U A 14 -11.746 -14.153 16.919 1.00 22.87 P
ATOM 3 OP1 U A 14 -10.836 -13.527 15.922 1.00 21.75 O
ATOM 4 OP2 U A 14 -12.001 -13.474 18.213 1.00 24.29 O
ATOM 5 O5' U A 14 -13.146 -14.457 16.211 1.00 22.30 O
ATOM 6 C5' U A 14 -13.199 -15.021 14.901 1.00 18.39 C
ATOM 7 C4' U A 14 -14.610 -14.974 14.351 1.00 18.47 C
ATOM 8 O4' U A 14 -15.450 -15.932 15.052 1.00 20.31 O
ATOM 9 C3' U A 14 -15.336 -13.639 14.474 1.00 17.35 C
ATOM 10 O3' U A 14 -16.222 -13.531 13.380 1.00 16.51 O
ATOM 11 C2' U A 14 -16.247 -13.875 15.670 1.00 18.01 C
ATOM 12 O2' U A 14 -17.364 -13.017 15.650 1.00 20.85 O
ATOM 13 C1' U A 14 -16.671 -15.309 15.381 1.00 17.97 C
ATOM 14 N1 U A 14 -17.324 -16.086 16.446 1.00 17.87 N
ATOM 15 C2 U A 14 -18.039 -17.200 16.055 1.00 19.73 C
ATOM 16 O2 U A 14 -18.186 -17.512 14.879 1.00 21.64 O
ATOM 17 N3 U A 14 -18.582 -17.932 17.080 1.00 19.82 N
ATOM 18 C4 U A 14 -18.497 -17.659 18.428 1.00 17.89 C
ATOM 19 O4 U A 14 -19.037 -18.415 19.235 1.00 18.08 O
ATOM 20 C5 U A 14 -17.770 -16.474 18.750 1.00 16.30 C
ATOM 21 C6 U A 14 -17.222 -15.744 17.771 1.00 16.22 C
ATOM 22 P A A 15 -15.743 -12.849 12.014 1.00 22.00 P
ATOM 23 OP1 A A 15 -14.289 -13.146 11.857 1.00 20.58 O
ATOM 24 OP2 A A 15 -16.216 -11.433 12.025 1.00 19.04 O
ATOM 25 O5' A A 15 -16.559 -13.649 10.893 1.00 20.14 O
TER
ATOM 1 O3' U B 8 -21.811 -7.572 18.701 1.00 21.75 O
ATOM 2 P G B 9 -20.523 -8.353 18.149 1.00 20.08 P
ATOM 3 OP1 G B 9 -19.406 -7.375 18.036 1.00 21.88 O
ATOM 4 OP2 G B 9 -20.926 -9.151 16.954 1.00 17.81 O
ATOM 5 O5' G B 9 -20.156 -9.345 19.340 1.00 17.03 O
ATOM 6 C5' G B 9 -21.010 -10.422 19.676 1.00 14.87 C
ATOM 7 C4' G B 9 -20.298 -11.384 20.586 1.00 15.10 C
ATOM 8 O4' G B 9 -21.051 -12.616 20.587 1.00 17.04 O
ATOM 9 C3' G B 9 -18.901 -11.772 20.131 1.00 15.37 C
ATOM 10 O3' G B 9 -17.952 -10.935 20.744 1.00 15.10 O
ATOM 11 C2' G B 9 -18.751 -13.185 20.657 1.00 16.76 C
ATOM 12 O2' G B 9 -18.352 -13.203 22.014 1.00 16.22 O
ATOM 13 C1' G B 9 -20.175 -13.721 20.486 1.00 18.25 C
ATOM 14 N9 G B 9 -20.439 -14.382 19.204 1.00 20.00 N
ATOM 15 C8 G B 9 -20.165 -13.905 17.944 1.00 19.18 C
ATOM 16 N7 G B 9 -20.508 -14.735 16.997 1.00 20.49 N
ATOM 17 C5 G B 9 -21.045 -15.822 17.670 1.00 18.63 C
ATOM 18 C6 G B 9 -21.579 -17.036 17.174 1.00 19.00 C
ATOM 19 O6 G B 9 -21.677 -17.417 15.994 1.00 17.33 O
ATOM 20 N1 G B 9 -22.020 -17.851 18.210 1.00 19.14 N
ATOM 21 C2 G B 9 -21.948 -17.539 19.548 1.00 18.35 C
ATOM 22 N2 G B 9 -22.435 -18.440 20.414 1.00 20.97 N
ATOM 23 N3 G B 9 -21.441 -16.426 20.012 1.00 16.67 N
ATOM 24 C4 G B 9 -21.015 -15.618 19.030 1.00 17.39 C
ATOM 25 P C B 10 -16.659 -10.480 19.931 1.00 18.60 P
ATOM 26 OP1 C B 10 -15.706 -9.870 20.899 1.00 22.53 O
ATOM 27 OP2 C B 10 -17.150 -9.688 18.767 1.00 16.53 O
ATOM 28 O5' C B 10 -15.990 -11.836 19.437 1.00 16.87 O
TER
ATOM 2 P U A 14 -11.746 -14.153 16.919 1.00 22.87 P
ATOM 3 OP1 U A 14 -10.836 -13.527 15.922 1.00 21.75 O
ATOM 4 OP2 U A 14 -12.001 -13.474 18.213 1.00 24.29 O
ATOM 5 O5' U A 14 -13.146 -14.457 16.211 1.00 22.30 O
ATOM 6 C5' U A 14 -13.199 -15.021 14.901 1.00 18.39 C
ATOM 7 C4' U A 14 -14.610 -14.974 14.351 1.00 18.47 C
ATOM 8 O4' U A 14 -15.450 -15.932 15.052 1.00 20.31 O
ATOM 9 C3' U A 14 -15.336 -13.639 14.474 1.00 17.35 C
ATOM 10 O3' U A 14 -16.222 -13.531 13.380 1.00 16.51 O
ATOM 11 C2' U A 14 -16.247 -13.875 15.670 1.00 18.01 C
ATOM 12 O2' U A 14 -17.364 -13.017 15.650 1.00 20.85 O
ATOM 13 C1' U A 14 -16.671 -15.309 15.381 1.00 17.97 C
ATOM 14 N1 U A 14 -17.324 -16.086 16.446 1.00 17.87 N
ATOM 15 C2 U A 14 -18.039 -17.200 16.055 1.00 19.73 C
ATOM 16 O2 U A 14 -18.186 -17.512 14.879 1.00 21.64 O
ATOM 17 N3 U A 14 -18.582 -17.932 17.080 1.00 19.82 N
ATOM 18 C4 U A 14 -18.497 -17.659 18.428 1.00 17.89 C
ATOM 19 O4 U A 14 -19.037 -18.415 19.235 1.00 18.08 O
ATOM 20 C5 U A 14 -17.770 -16.474 18.750 1.00 16.30 C
ATOM 21 C6 U A 14 -17.222 -15.744 17.771 1.00 16.22 C
ATOM 22 P A A 15 -15.743 -12.849 12.014 1.00 22.00 P
ATOM 23 OP1 A A 15 -14.289 -13.146 11.857 1.00 20.58 O
ATOM 24 OP2 A A 15 -16.216 -11.433 12.025 1.00 19.04 O
ATOM 25 O5' A A 15 -16.559 -13.649 10.893 1.00 20.14 O
TER
ATOM 1 O3' U B 8 -21.811 -7.572 18.701 1.00 21.75 O
ATOM 2 P G B 9 -20.523 -8.353 18.149 1.00 20.08 P
ATOM 3 OP1 G B 9 -19.406 -7.375 18.036 1.00 21.88 O
ATOM 4 OP2 G B 9 -20.926 -9.151 16.954 1.00 17.81 O
ATOM 5 O5' G B 9 -20.156 -9.345 19.340 1.00 17.03 O
ATOM 6 C5' G B 9 -21.010 -10.422 19.676 1.00 14.87 C
ATOM 7 C4' G B 9 -20.298 -11.384 20.586 1.00 15.10 C
ATOM 8 O4' G B 9 -21.051 -12.616 20.587 1.00 17.04 O
ATOM 9 C3' G B 9 -18.901 -11.772 20.131 1.00 15.37 C
ATOM 10 O3' G B 9 -17.952 -10.935 20.744 1.00 15.10 O
ATOM 11 C2' G B 9 -18.751 -13.185 20.657 1.00 16.76 C
ATOM 12 O2' G B 9 -18.352 -13.203 22.014 1.00 16.22 O
ATOM 13 C1' G B 9 -20.175 -13.721 20.486 1.00 18.25 C
ATOM 14 N9 G B 9 -20.439 -14.382 19.204 1.00 20.00 N
ATOM 15 C8 G B 9 -20.165 -13.905 17.944 1.00 19.18 C
ATOM 16 N7 G B 9 -20.508 -14.735 16.997 1.00 20.49 N
ATOM 17 C5 G B 9 -21.045 -15.822 17.670 1.00 18.63 C
ATOM 18 C6 G B 9 -21.579 -17.036 17.174 1.00 19.00 C
ATOM 19 O6 G B 9 -21.677 -17.417 15.994 1.00 17.33 O
ATOM 20 N1 G B 9 -22.020 -17.851 18.210 1.00 19.14 N
ATOM 21 C2 G B 9 -21.948 -17.539 19.548 1.00 18.35 C
ATOM 22 N2 G B 9 -22.435 -18.440 20.414 1.00 20.97 N
ATOM 23 N3 G B 9 -21.441 -16.426 20.012 1.00 16.67 N
ATOM 24 C4 G B 9 -21.015 -15.618 19.030 1.00 17.39 C
ATOM 25 P C B 10 -16.659 -10.480 19.931 1.00 18.60 P
ATOM 26 OP1 C B 10 -15.706 -9.870 20.899 1.00 22.53 O
ATOM 27 OP2 C B 10 -17.150 -9.688 18.767 1.00 16.53 O
ATOM 28 O5' C B 10 -15.990 -11.836 19.437 1.00 16.87 O
TER
Atoms:
C4: (-18.497,-17.659,18.428)
N3: (-18.582,-17.932,17.080)
OP1: (-10.836,-13.527,15.922)
OP2: (-12.001,-13.474,18.213)
C2: (-18.039,-17.200,16.055)
C1': (-16.671,-15.309,15.381)
C3': (-15.336,-13.639,14.474)
O5': (-13.146,-14.457,16.211)
O4': (-15.450,-15.932,15.052)
C5': (-13.199,-15.021,14.901)
P: (-11.746,-14.153,16.919)
C4': (-14.610,-14.974,14.351)
C2': (-16.247,-13.875,15.670)
O2': (-17.364,-13.017,15.650)
N1: (-17.324,-16.086,16.446)
O4: (-19.037,-18.415,19.235)
O2: (-18.186,-17.512,14.879)
C6: (-17.222,-15.744,17.771)
C5: (-17.770,-16.474,18.750)
O3': (-16.222,-13.531,13.380)
N3: (-18.582,-17.932,17.080)
OP1: (-10.836,-13.527,15.922)
OP2: (-12.001,-13.474,18.213)
C2: (-18.039,-17.200,16.055)
C1': (-16.671,-15.309,15.381)
C3': (-15.336,-13.639,14.474)
O5': (-13.146,-14.457,16.211)
O4': (-15.450,-15.932,15.052)
C5': (-13.199,-15.021,14.901)
P: (-11.746,-14.153,16.919)
C4': (-14.610,-14.974,14.351)
C2': (-16.247,-13.875,15.670)
O2': (-17.364,-13.017,15.650)
N1: (-17.324,-16.086,16.446)
O4: (-19.037,-18.415,19.235)
O2: (-18.186,-17.512,14.879)
C6: (-17.222,-15.744,17.771)
C5: (-17.770,-16.474,18.750)
O3': (-16.222,-13.531,13.380)
OP1: (-19.406,-7.375,18.036)
OP2: (-20.926,-9.151,16.954)
C3': (-18.901,-11.772,20.131)
C1': (-20.175,-13.721,20.486)
C5': (-21.010,-10.422,19.676)
O6: (-21.677,-17.417,15.994)
O4': (-21.051,-12.616,20.587)
C8: (-20.165,-13.905,17.944)
C2: (-21.948,-17.539,19.548)
C6: (-21.579,-17.036,17.174)
C5: (-21.045,-15.822,17.670)
C4: (-21.015,-15.618,19.030)
P: (-20.523,-8.353,18.149)
C4': (-20.298,-11.384,20.586)
C2': (-18.751,-13.185,20.657)
O2': (-18.352,-13.203,22.014)
N1: (-22.020,-17.851,18.210)
N2: (-22.435,-18.440,20.414)
N3: (-21.441,-16.426,20.012)
N7: (-20.508,-14.735,16.997)
N9: (-20.439,-14.382,19.204)
O5': (-20.156,-9.345,19.340)
O3': (-17.952,-10.935,20.744)
OP2: (-20.926,-9.151,16.954)
C3': (-18.901,-11.772,20.131)
C1': (-20.175,-13.721,20.486)
C5': (-21.010,-10.422,19.676)
O6: (-21.677,-17.417,15.994)
O4': (-21.051,-12.616,20.587)
C8: (-20.165,-13.905,17.944)
C2: (-21.948,-17.539,19.548)
C6: (-21.579,-17.036,17.174)
C5: (-21.045,-15.822,17.670)
C4: (-21.015,-15.618,19.030)
P: (-20.523,-8.353,18.149)
C4': (-20.298,-11.384,20.586)
C2': (-18.751,-13.185,20.657)
O2': (-18.352,-13.203,22.014)
N1: (-22.020,-17.851,18.210)
N2: (-22.435,-18.440,20.414)
N3: (-21.441,-16.426,20.012)
N7: (-20.508,-14.735,16.997)
N9: (-20.439,-14.382,19.204)
O5': (-20.156,-9.345,19.340)
O3': (-17.952,-10.935,20.744)
Image (generated by PyMOL):