Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:G14:G9
Extra
PDB:
ATOM 1 O3' A A 13 -4.672 -42.811 8.904 1.00 20.87 O
ATOM 2 P U A 14 -5.273 -44.213 8.414 1.00 20.94 P
ATOM 3 OP1 U A 14 -6.326 -44.625 9.381 1.00 22.77 O
ATOM 4 OP2 U A 14 -4.119 -45.118 8.151 1.00 20.15 O
ATOM 5 O5' U A 14 -6.014 -43.834 7.057 1.00 19.42 O
ATOM 6 C5' U A 14 -7.351 -43.342 7.076 1.00 17.40 C
ATOM 7 C4' U A 14 -7.900 -43.260 5.672 1.00 18.07 C
ATOM 8 O4' U A 14 -7.319 -42.117 4.978 1.00 18.22 O
ATOM 9 C3' U A 14 -7.597 -44.465 4.786 1.00 17.98 C
ATOM 10 O3' U A 14 -8.670 -44.626 3.870 1.00 17.04 O
ATOM 11 C2' U A 14 -6.400 -43.975 3.980 1.00 18.22 C
ATOM 12 O2' U A 14 -6.193 -44.691 2.779 1.00 17.76 O
ATOM 13 C1' U A 14 -6.864 -42.547 3.715 1.00 18.13 C
ATOM 14 N1 U A 14 -5.923 -41.562 3.155 1.00 17.19 N
ATOM 15 C2 U A 14 -6.478 -40.422 2.607 1.00 16.58 C
ATOM 16 O2 U A 14 -7.688 -40.220 2.585 1.00 18.52 O
ATOM 17 N3 U A 14 -5.574 -39.535 2.077 1.00 12.52 N
ATOM 18 C4 U A 14 -4.204 -39.671 2.029 1.00 10.78 C
ATOM 19 O4 U A 14 -3.537 -38.809 1.467 1.00 8.31 O
ATOM 20 C5 U A 14 -3.698 -40.874 2.613 1.00 11.57 C
ATOM 21 C6 U A 14 -4.552 -41.757 3.150 1.00 16.14 C
ATOM 22 P A A 15 -10.049 -45.278 4.356 1.00 20.50 P
ATOM 23 OP1 A A 15 -9.884 -45.678 5.777 1.00 20.19 O
ATOM 24 OP2 A A 15 -10.430 -46.297 3.342 1.00 20.68 O
ATOM 25 O5' A A 15 -11.103 -44.081 4.283 1.00 18.89 O
TER
ATOM 1 O3' U B 8 -3.486 -49.007 -2.799 1.00 19.43 O
ATOM 2 P G B 9 -3.948 -48.523 -1.335 1.00 20.12 P
ATOM 3 OP1 G B 9 -3.195 -49.319 -0.328 1.00 20.43 O
ATOM 4 OP2 G B 9 -5.442 -48.498 -1.292 1.00 13.81 O
ATOM 5 O5' G B 9 -3.391 -47.034 -1.266 1.00 21.35 O
ATOM 6 C5' G B 9 -2.040 -46.747 -1.622 1.00 20.06 C
ATOM 7 C4' G B 9 -1.546 -45.531 -0.873 1.00 19.77 C
ATOM 8 O4' G B 9 -2.065 -44.310 -1.447 1.00 19.98 O
ATOM 9 C3' G B 9 -1.973 -45.446 0.579 1.00 18.74 C
ATOM 10 O3' G B 9 -1.130 -46.273 1.352 1.00 20.44 O
ATOM 11 C2' G B 9 -1.744 -43.973 0.896 1.00 19.36 C
ATOM 12 O2' G B 9 -0.387 -43.720 1.187 1.00 23.50 O
ATOM 13 C1' G B 9 -2.063 -43.303 -0.447 1.00 18.15 C
ATOM 14 N9 G B 9 -3.324 -42.575 -0.522 1.00 13.74 N
ATOM 15 C8 G B 9 -4.566 -43.050 -0.194 1.00 12.68 C
ATOM 16 N7 G B 9 -5.520 -42.185 -0.413 1.00 13.95 N
ATOM 17 C5 G B 9 -4.865 -41.067 -0.908 1.00 10.53 C
ATOM 18 C6 G B 9 -5.382 -39.816 -1.337 1.00 8.93 C
ATOM 19 O6 G B 9 -6.563 -39.445 -1.386 1.00 7.02 O
ATOM 20 N1 G B 9 -4.365 -38.961 -1.750 1.00 6.39 N
ATOM 21 C2 G B 9 -3.031 -39.272 -1.759 1.00 6.23 C
ATOM 22 N2 G B 9 -2.212 -38.311 -2.190 1.00 7.53 N
ATOM 23 N3 G B 9 -2.537 -40.439 -1.374 1.00 7.02 N
ATOM 24 C4 G B 9 -3.505 -41.283 -0.964 1.00 10.31 C
ATOM 25 P C B 10 -1.713 -46.996 2.650 1.00 27.35 P
ATOM 26 OP1 C B 10 -0.554 -47.528 3.425 1.00 26.28 O
ATOM 27 OP2 C B 10 -2.813 -47.910 2.228 1.00 26.56 O
ATOM 28 O5' C B 10 -2.383 -45.802 3.459 1.00 28.21 O
TER
ATOM 2 P U A 14 -5.273 -44.213 8.414 1.00 20.94 P
ATOM 3 OP1 U A 14 -6.326 -44.625 9.381 1.00 22.77 O
ATOM 4 OP2 U A 14 -4.119 -45.118 8.151 1.00 20.15 O
ATOM 5 O5' U A 14 -6.014 -43.834 7.057 1.00 19.42 O
ATOM 6 C5' U A 14 -7.351 -43.342 7.076 1.00 17.40 C
ATOM 7 C4' U A 14 -7.900 -43.260 5.672 1.00 18.07 C
ATOM 8 O4' U A 14 -7.319 -42.117 4.978 1.00 18.22 O
ATOM 9 C3' U A 14 -7.597 -44.465 4.786 1.00 17.98 C
ATOM 10 O3' U A 14 -8.670 -44.626 3.870 1.00 17.04 O
ATOM 11 C2' U A 14 -6.400 -43.975 3.980 1.00 18.22 C
ATOM 12 O2' U A 14 -6.193 -44.691 2.779 1.00 17.76 O
ATOM 13 C1' U A 14 -6.864 -42.547 3.715 1.00 18.13 C
ATOM 14 N1 U A 14 -5.923 -41.562 3.155 1.00 17.19 N
ATOM 15 C2 U A 14 -6.478 -40.422 2.607 1.00 16.58 C
ATOM 16 O2 U A 14 -7.688 -40.220 2.585 1.00 18.52 O
ATOM 17 N3 U A 14 -5.574 -39.535 2.077 1.00 12.52 N
ATOM 18 C4 U A 14 -4.204 -39.671 2.029 1.00 10.78 C
ATOM 19 O4 U A 14 -3.537 -38.809 1.467 1.00 8.31 O
ATOM 20 C5 U A 14 -3.698 -40.874 2.613 1.00 11.57 C
ATOM 21 C6 U A 14 -4.552 -41.757 3.150 1.00 16.14 C
ATOM 22 P A A 15 -10.049 -45.278 4.356 1.00 20.50 P
ATOM 23 OP1 A A 15 -9.884 -45.678 5.777 1.00 20.19 O
ATOM 24 OP2 A A 15 -10.430 -46.297 3.342 1.00 20.68 O
ATOM 25 O5' A A 15 -11.103 -44.081 4.283 1.00 18.89 O
TER
ATOM 1 O3' U B 8 -3.486 -49.007 -2.799 1.00 19.43 O
ATOM 2 P G B 9 -3.948 -48.523 -1.335 1.00 20.12 P
ATOM 3 OP1 G B 9 -3.195 -49.319 -0.328 1.00 20.43 O
ATOM 4 OP2 G B 9 -5.442 -48.498 -1.292 1.00 13.81 O
ATOM 5 O5' G B 9 -3.391 -47.034 -1.266 1.00 21.35 O
ATOM 6 C5' G B 9 -2.040 -46.747 -1.622 1.00 20.06 C
ATOM 7 C4' G B 9 -1.546 -45.531 -0.873 1.00 19.77 C
ATOM 8 O4' G B 9 -2.065 -44.310 -1.447 1.00 19.98 O
ATOM 9 C3' G B 9 -1.973 -45.446 0.579 1.00 18.74 C
ATOM 10 O3' G B 9 -1.130 -46.273 1.352 1.00 20.44 O
ATOM 11 C2' G B 9 -1.744 -43.973 0.896 1.00 19.36 C
ATOM 12 O2' G B 9 -0.387 -43.720 1.187 1.00 23.50 O
ATOM 13 C1' G B 9 -2.063 -43.303 -0.447 1.00 18.15 C
ATOM 14 N9 G B 9 -3.324 -42.575 -0.522 1.00 13.74 N
ATOM 15 C8 G B 9 -4.566 -43.050 -0.194 1.00 12.68 C
ATOM 16 N7 G B 9 -5.520 -42.185 -0.413 1.00 13.95 N
ATOM 17 C5 G B 9 -4.865 -41.067 -0.908 1.00 10.53 C
ATOM 18 C6 G B 9 -5.382 -39.816 -1.337 1.00 8.93 C
ATOM 19 O6 G B 9 -6.563 -39.445 -1.386 1.00 7.02 O
ATOM 20 N1 G B 9 -4.365 -38.961 -1.750 1.00 6.39 N
ATOM 21 C2 G B 9 -3.031 -39.272 -1.759 1.00 6.23 C
ATOM 22 N2 G B 9 -2.212 -38.311 -2.190 1.00 7.53 N
ATOM 23 N3 G B 9 -2.537 -40.439 -1.374 1.00 7.02 N
ATOM 24 C4 G B 9 -3.505 -41.283 -0.964 1.00 10.31 C
ATOM 25 P C B 10 -1.713 -46.996 2.650 1.00 27.35 P
ATOM 26 OP1 C B 10 -0.554 -47.528 3.425 1.00 26.28 O
ATOM 27 OP2 C B 10 -2.813 -47.910 2.228 1.00 26.56 O
ATOM 28 O5' C B 10 -2.383 -45.802 3.459 1.00 28.21 O
TER
Atoms:
C4: (-4.204,-39.671,2.029)
N3: (-5.574,-39.535,2.077)
OP1: (-6.326,-44.625,9.381)
OP2: (-4.119,-45.118,8.151)
C2: (-6.478,-40.422,2.607)
C1': (-6.864,-42.547,3.715)
C3': (-7.597,-44.465,4.786)
O5': (-6.014,-43.834,7.057)
O4': (-7.319,-42.117,4.978)
C5': (-7.351,-43.342,7.076)
P: (-5.273,-44.213,8.414)
C4': (-7.900,-43.260,5.672)
C2': (-6.400,-43.975,3.980)
O2': (-6.193,-44.691,2.779)
N1: (-5.923,-41.562,3.155)
O4: (-3.537,-38.809,1.467)
O2: (-7.688,-40.220,2.585)
C6: (-4.552,-41.757,3.150)
C5: (-3.698,-40.874,2.613)
O3': (-8.670,-44.626,3.870)
N3: (-5.574,-39.535,2.077)
OP1: (-6.326,-44.625,9.381)
OP2: (-4.119,-45.118,8.151)
C2: (-6.478,-40.422,2.607)
C1': (-6.864,-42.547,3.715)
C3': (-7.597,-44.465,4.786)
O5': (-6.014,-43.834,7.057)
O4': (-7.319,-42.117,4.978)
C5': (-7.351,-43.342,7.076)
P: (-5.273,-44.213,8.414)
C4': (-7.900,-43.260,5.672)
C2': (-6.400,-43.975,3.980)
O2': (-6.193,-44.691,2.779)
N1: (-5.923,-41.562,3.155)
O4: (-3.537,-38.809,1.467)
O2: (-7.688,-40.220,2.585)
C6: (-4.552,-41.757,3.150)
C5: (-3.698,-40.874,2.613)
O3': (-8.670,-44.626,3.870)
OP1: (-3.195,-49.319,-0.328)
OP2: (-5.442,-48.498,-1.292)
C3': (-1.973,-45.446,0.579)
C1': (-2.063,-43.303,-0.447)
C5': (-2.040,-46.747,-1.622)
O6: (-6.563,-39.445,-1.386)
O4': (-2.065,-44.310,-1.447)
C8: (-4.566,-43.050,-0.194)
C2: (-3.031,-39.272,-1.759)
C6: (-5.382,-39.816,-1.337)
C5: (-4.865,-41.067,-0.908)
C4: (-3.505,-41.283,-0.964)
P: (-3.948,-48.523,-1.335)
C4': (-1.546,-45.531,-0.873)
C2': (-1.744,-43.973,0.896)
O2': (-0.387,-43.720,1.187)
N1: (-4.365,-38.961,-1.750)
N2: (-2.212,-38.311,-2.190)
N3: (-2.537,-40.439,-1.374)
N7: (-5.520,-42.185,-0.413)
N9: (-3.324,-42.575,-0.522)
O5': (-3.391,-47.034,-1.266)
O3': (-1.130,-46.273,1.352)
OP2: (-5.442,-48.498,-1.292)
C3': (-1.973,-45.446,0.579)
C1': (-2.063,-43.303,-0.447)
C5': (-2.040,-46.747,-1.622)
O6: (-6.563,-39.445,-1.386)
O4': (-2.065,-44.310,-1.447)
C8: (-4.566,-43.050,-0.194)
C2: (-3.031,-39.272,-1.759)
C6: (-5.382,-39.816,-1.337)
C5: (-4.865,-41.067,-0.908)
C4: (-3.505,-41.283,-0.964)
P: (-3.948,-48.523,-1.335)
C4': (-1.546,-45.531,-0.873)
C2': (-1.744,-43.973,0.896)
O2': (-0.387,-43.720,1.187)
N1: (-4.365,-38.961,-1.750)
N2: (-2.212,-38.311,-2.190)
N3: (-2.537,-40.439,-1.374)
N7: (-5.520,-42.185,-0.413)
N9: (-3.324,-42.575,-0.522)
O5': (-3.391,-47.034,-1.266)
O3': (-1.130,-46.273,1.352)
Image (generated by PyMOL):