Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2XD0:G11:G8
Extra
PDB:
ATOM 1 O3' U A 10 -3.425 -30.878 87.214 1.00 60.38 O
ATOM 2 P U A 11 -3.931 -30.368 88.623 1.00 66.23 P
ATOM 3 OP1 U A 11 -5.388 -30.141 88.714 1.00 58.28 O
ATOM 4 OP2 U A 11 -3.306 -31.395 89.474 1.00 68.51 O
ATOM 5 O5' U A 11 -3.117 -29.029 88.703 1.00 50.78 O
ATOM 6 C5' U A 11 -1.708 -29.128 88.607 1.00 45.46 C
ATOM 7 C4' U A 11 -1.030 -27.840 88.985 1.00 43.92 C
ATOM 8 O4' U A 11 -0.917 -26.979 87.825 1.00 37.48 O
ATOM 9 C3' U A 11 -1.753 -27.022 90.043 1.00 44.45 C
ATOM 10 O3' U A 11 -0.791 -26.501 90.949 1.00 48.57 O
ATOM 11 C2' U A 11 -2.444 -25.914 89.247 1.00 37.62 C
ATOM 12 O2' U A 11 -2.675 -24.696 89.928 1.00 42.60 O
ATOM 13 C1' U A 11 -1.479 -25.717 88.099 1.00 32.94 C
ATOM 14 N1 U A 11 -2.234 -25.267 86.923 1.00 26.84 N
ATOM 15 C2 U A 11 -1.994 -23.978 86.538 1.00 26.18 C
ATOM 16 O2 U A 11 -1.200 -23.298 87.187 1.00 25.76 O
ATOM 17 N3 U A 11 -2.684 -23.526 85.436 1.00 26.34 N
ATOM 18 C4 U A 11 -3.595 -24.251 84.689 1.00 27.04 C
ATOM 19 O4 U A 11 -4.164 -23.745 83.701 1.00 27.37 O
ATOM 20 C5 U A 11 -3.786 -25.594 85.165 1.00 27.62 C
ATOM 21 C6 U A 11 -3.124 -26.043 86.244 1.00 27.56 C
ATOM 22 P U A 12 -0.420 -27.530 92.119 1.00 61.01 P
ATOM 23 OP1 U A 12 0.208 -28.698 91.437 1.00 63.89 O
ATOM 24 OP2 U A 12 -1.651 -27.716 92.933 1.00 62.27 O
ATOM 25 O5' U A 12 0.680 -26.707 92.919 1.00 57.29 O
TER
ATOM 1 O3' U B 7 -13.382 -25.177 87.968 1.00 46.98 O
ATOM 2 P G B 8 -12.293 -26.235 87.500 1.00 51.59 P
ATOM 3 OP1 G B 8 -12.979 -27.122 86.547 1.00 53.72 O
ATOM 4 OP2 G B 8 -11.628 -26.798 88.704 1.00 44.72 O
ATOM 5 O5' G B 8 -11.237 -25.285 86.805 1.00 37.28 O
ATOM 6 C5' G B 8 -11.465 -24.463 85.669 1.00 37.44 C
ATOM 7 C4' G B 8 -10.256 -24.471 84.755 1.00 35.26 C
ATOM 8 O4' G B 8 -9.129 -23.790 85.383 1.00 33.28 O
ATOM 9 C3' G B 8 -9.741 -25.847 84.353 1.00 34.74 C
ATOM 10 O3' G B 8 -9.270 -25.773 83.004 1.00 33.90 O
ATOM 11 C2' G B 8 -8.587 -26.025 85.333 1.00 33.09 C
ATOM 12 O2' G B 8 -7.625 -26.995 85.008 1.00 32.15 O
ATOM 13 C1' G B 8 -8.000 -24.628 85.312 1.00 31.80 C
ATOM 14 N9 G B 8 -7.026 -24.328 86.374 1.00 30.50 N
ATOM 15 C8 G B 8 -6.671 -25.144 87.417 1.00 30.47 C
ATOM 16 N7 G B 8 -5.743 -24.615 88.179 1.00 29.35 N
ATOM 17 C5 G B 8 -5.435 -23.384 87.602 1.00 28.57 C
ATOM 18 C6 G B 8 -4.497 -22.358 87.979 1.00 27.51 C
ATOM 19 O6 G B 8 -3.695 -22.297 88.923 1.00 26.92 O
ATOM 20 N1 G B 8 -4.514 -21.277 87.111 1.00 27.44 N
ATOM 21 C2 G B 8 -5.330 -21.192 86.013 1.00 28.29 C
ATOM 22 N2 G B 8 -5.184 -20.062 85.294 1.00 28.41 N
ATOM 23 N3 G B 8 -6.208 -22.131 85.650 1.00 29.22 N
ATOM 24 C4 G B 8 -6.217 -23.202 86.478 1.00 29.30 C
ATOM 25 P A B 9 -10.057 -26.551 81.809 1.00 35.36 P
ATOM 26 OP1 A B 9 -11.505 -26.566 82.218 1.00 38.03 O
ATOM 27 OP2 A B 9 -9.658 -25.974 80.492 1.00 34.57 O
ATOM 28 O5' A B 9 -9.365 -27.992 81.913 1.00 34.70 O
TER
ATOM 2 P U A 11 -3.931 -30.368 88.623 1.00 66.23 P
ATOM 3 OP1 U A 11 -5.388 -30.141 88.714 1.00 58.28 O
ATOM 4 OP2 U A 11 -3.306 -31.395 89.474 1.00 68.51 O
ATOM 5 O5' U A 11 -3.117 -29.029 88.703 1.00 50.78 O
ATOM 6 C5' U A 11 -1.708 -29.128 88.607 1.00 45.46 C
ATOM 7 C4' U A 11 -1.030 -27.840 88.985 1.00 43.92 C
ATOM 8 O4' U A 11 -0.917 -26.979 87.825 1.00 37.48 O
ATOM 9 C3' U A 11 -1.753 -27.022 90.043 1.00 44.45 C
ATOM 10 O3' U A 11 -0.791 -26.501 90.949 1.00 48.57 O
ATOM 11 C2' U A 11 -2.444 -25.914 89.247 1.00 37.62 C
ATOM 12 O2' U A 11 -2.675 -24.696 89.928 1.00 42.60 O
ATOM 13 C1' U A 11 -1.479 -25.717 88.099 1.00 32.94 C
ATOM 14 N1 U A 11 -2.234 -25.267 86.923 1.00 26.84 N
ATOM 15 C2 U A 11 -1.994 -23.978 86.538 1.00 26.18 C
ATOM 16 O2 U A 11 -1.200 -23.298 87.187 1.00 25.76 O
ATOM 17 N3 U A 11 -2.684 -23.526 85.436 1.00 26.34 N
ATOM 18 C4 U A 11 -3.595 -24.251 84.689 1.00 27.04 C
ATOM 19 O4 U A 11 -4.164 -23.745 83.701 1.00 27.37 O
ATOM 20 C5 U A 11 -3.786 -25.594 85.165 1.00 27.62 C
ATOM 21 C6 U A 11 -3.124 -26.043 86.244 1.00 27.56 C
ATOM 22 P U A 12 -0.420 -27.530 92.119 1.00 61.01 P
ATOM 23 OP1 U A 12 0.208 -28.698 91.437 1.00 63.89 O
ATOM 24 OP2 U A 12 -1.651 -27.716 92.933 1.00 62.27 O
ATOM 25 O5' U A 12 0.680 -26.707 92.919 1.00 57.29 O
TER
ATOM 1 O3' U B 7 -13.382 -25.177 87.968 1.00 46.98 O
ATOM 2 P G B 8 -12.293 -26.235 87.500 1.00 51.59 P
ATOM 3 OP1 G B 8 -12.979 -27.122 86.547 1.00 53.72 O
ATOM 4 OP2 G B 8 -11.628 -26.798 88.704 1.00 44.72 O
ATOM 5 O5' G B 8 -11.237 -25.285 86.805 1.00 37.28 O
ATOM 6 C5' G B 8 -11.465 -24.463 85.669 1.00 37.44 C
ATOM 7 C4' G B 8 -10.256 -24.471 84.755 1.00 35.26 C
ATOM 8 O4' G B 8 -9.129 -23.790 85.383 1.00 33.28 O
ATOM 9 C3' G B 8 -9.741 -25.847 84.353 1.00 34.74 C
ATOM 10 O3' G B 8 -9.270 -25.773 83.004 1.00 33.90 O
ATOM 11 C2' G B 8 -8.587 -26.025 85.333 1.00 33.09 C
ATOM 12 O2' G B 8 -7.625 -26.995 85.008 1.00 32.15 O
ATOM 13 C1' G B 8 -8.000 -24.628 85.312 1.00 31.80 C
ATOM 14 N9 G B 8 -7.026 -24.328 86.374 1.00 30.50 N
ATOM 15 C8 G B 8 -6.671 -25.144 87.417 1.00 30.47 C
ATOM 16 N7 G B 8 -5.743 -24.615 88.179 1.00 29.35 N
ATOM 17 C5 G B 8 -5.435 -23.384 87.602 1.00 28.57 C
ATOM 18 C6 G B 8 -4.497 -22.358 87.979 1.00 27.51 C
ATOM 19 O6 G B 8 -3.695 -22.297 88.923 1.00 26.92 O
ATOM 20 N1 G B 8 -4.514 -21.277 87.111 1.00 27.44 N
ATOM 21 C2 G B 8 -5.330 -21.192 86.013 1.00 28.29 C
ATOM 22 N2 G B 8 -5.184 -20.062 85.294 1.00 28.41 N
ATOM 23 N3 G B 8 -6.208 -22.131 85.650 1.00 29.22 N
ATOM 24 C4 G B 8 -6.217 -23.202 86.478 1.00 29.30 C
ATOM 25 P A B 9 -10.057 -26.551 81.809 1.00 35.36 P
ATOM 26 OP1 A B 9 -11.505 -26.566 82.218 1.00 38.03 O
ATOM 27 OP2 A B 9 -9.658 -25.974 80.492 1.00 34.57 O
ATOM 28 O5' A B 9 -9.365 -27.992 81.913 1.00 34.70 O
TER
Atoms:
C4: (-3.595,-24.251,84.689)
N3: (-2.684,-23.526,85.436)
OP1: (-5.388,-30.141,88.714)
OP2: (-3.306,-31.395,89.474)
C2: (-1.994,-23.978,86.538)
C1': (-1.479,-25.717,88.099)
C3': (-1.753,-27.022,90.043)
O5': (-3.117,-29.029,88.703)
O4': (-0.917,-26.979,87.825)
C5': (-1.708,-29.128,88.607)
P: (-3.931,-30.368,88.623)
C4': (-1.030,-27.840,88.985)
C2': (-2.444,-25.914,89.247)
O2': (-2.675,-24.696,89.928)
N1: (-2.234,-25.267,86.923)
O4: (-4.164,-23.745,83.701)
O2: (-1.200,-23.298,87.187)
C6: (-3.124,-26.043,86.244)
C5: (-3.786,-25.594,85.165)
O3': (-0.791,-26.501,90.949)
N3: (-2.684,-23.526,85.436)
OP1: (-5.388,-30.141,88.714)
OP2: (-3.306,-31.395,89.474)
C2: (-1.994,-23.978,86.538)
C1': (-1.479,-25.717,88.099)
C3': (-1.753,-27.022,90.043)
O5': (-3.117,-29.029,88.703)
O4': (-0.917,-26.979,87.825)
C5': (-1.708,-29.128,88.607)
P: (-3.931,-30.368,88.623)
C4': (-1.030,-27.840,88.985)
C2': (-2.444,-25.914,89.247)
O2': (-2.675,-24.696,89.928)
N1: (-2.234,-25.267,86.923)
O4: (-4.164,-23.745,83.701)
O2: (-1.200,-23.298,87.187)
C6: (-3.124,-26.043,86.244)
C5: (-3.786,-25.594,85.165)
O3': (-0.791,-26.501,90.949)
OP1: (-12.979,-27.122,86.547)
OP2: (-11.628,-26.798,88.704)
C3': (-9.741,-25.847,84.353)
C1': (-8.000,-24.628,85.312)
C5': (-11.465,-24.463,85.669)
O6: (-3.695,-22.297,88.923)
O4': (-9.129,-23.790,85.383)
C8: (-6.671,-25.144,87.417)
C2: (-5.330,-21.192,86.013)
C6: (-4.497,-22.358,87.979)
C5: (-5.435,-23.384,87.602)
C4: (-6.217,-23.202,86.478)
P: (-12.293,-26.235,87.500)
C4': (-10.256,-24.471,84.755)
C2': (-8.587,-26.025,85.333)
O2': (-7.625,-26.995,85.008)
N1: (-4.514,-21.277,87.111)
N2: (-5.184,-20.062,85.294)
N3: (-6.208,-22.131,85.650)
N7: (-5.743,-24.615,88.179)
N9: (-7.026,-24.328,86.374)
O5': (-11.237,-25.285,86.805)
O3': (-9.270,-25.773,83.004)
OP2: (-11.628,-26.798,88.704)
C3': (-9.741,-25.847,84.353)
C1': (-8.000,-24.628,85.312)
C5': (-11.465,-24.463,85.669)
O6: (-3.695,-22.297,88.923)
O4': (-9.129,-23.790,85.383)
C8: (-6.671,-25.144,87.417)
C2: (-5.330,-21.192,86.013)
C6: (-4.497,-22.358,87.979)
C5: (-5.435,-23.384,87.602)
C4: (-6.217,-23.202,86.478)
P: (-12.293,-26.235,87.500)
C4': (-10.256,-24.471,84.755)
C2': (-8.587,-26.025,85.333)
O2': (-7.625,-26.995,85.008)
N1: (-4.514,-21.277,87.111)
N2: (-5.184,-20.062,85.294)
N3: (-6.208,-22.131,85.650)
N7: (-5.743,-24.615,88.179)
N9: (-7.026,-24.328,86.374)
O5': (-11.237,-25.285,86.805)
O3': (-9.270,-25.773,83.004)
Image (generated by PyMOL):