Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2XD0:H11:H8
Extra
PDB:
ATOM 1 O3' U A 10 -3.679 19.492 104.461 1.00 39.35 O
ATOM 2 P U A 11 -3.991 20.195 103.084 1.00 44.70 P
ATOM 3 OP1 U A 11 -5.280 19.766 102.504 1.00 35.51 O
ATOM 4 OP2 U A 11 -3.733 21.621 103.329 1.00 45.84 O
ATOM 5 O5' U A 11 -2.852 19.513 102.269 1.00 33.98 O
ATOM 6 C5' U A 11 -1.538 19.637 102.757 1.00 35.80 C
ATOM 7 C4' U A 11 -0.588 19.183 101.698 1.00 31.55 C
ATOM 8 O4' U A 11 -0.673 17.745 101.592 1.00 28.34 O
ATOM 9 C3' U A 11 -0.882 19.723 100.304 1.00 32.19 C
ATOM 10 O3' U A 11 0.341 20.059 99.663 1.00 38.67 O
ATOM 11 C2' U A 11 -1.525 18.546 99.579 1.00 28.20 C
ATOM 12 O2' U A 11 -1.294 18.516 98.183 1.00 29.96 O
ATOM 13 C1' U A 11 -0.855 17.365 100.253 1.00 27.87 C
ATOM 14 N1 U A 11 -1.702 16.163 100.202 1.00 27.10 N
ATOM 15 C2 U A 11 -1.102 15.094 99.582 1.00 26.88 C
ATOM 16 O2 U A 11 0.034 15.198 99.146 1.00 27.33 O
ATOM 17 N3 U A 11 -1.859 13.943 99.506 1.00 26.40 N
ATOM 18 C4 U A 11 -3.152 13.785 99.985 1.00 26.15 C
ATOM 19 O4 U A 11 -3.726 12.682 99.846 1.00 25.95 O
ATOM 20 C5 U A 11 -3.704 14.964 100.610 1.00 26.45 C
ATOM 21 C6 U A 11 -2.983 16.087 100.697 1.00 26.91 C
ATOM 22 P U A 12 1.049 21.438 100.073 1.00 50.75 P
ATOM 23 OP1 U A 12 0.852 21.689 101.535 1.00 49.94 O
ATOM 24 OP2 U A 12 0.547 22.374 99.014 1.00 51.17 O
ATOM 25 O5' U A 12 2.575 21.068 99.892 1.00 48.02 O
TER
ATOM 1 O3' U B 7 -12.238 18.110 97.438 1.00 32.86 O
ATOM 2 P G B 8 -11.565 18.223 98.919 1.00 32.14 P
ATOM 3 OP1 G B 8 -12.746 18.070 99.812 1.00 33.37 O
ATOM 4 OP2 G B 8 -10.648 19.388 99.120 1.00 31.97 O
ATOM 5 O5' G B 8 -10.627 16.947 98.888 1.00 30.53 O
ATOM 6 C5' G B 8 -11.139 15.677 98.522 1.00 30.49 C
ATOM 7 C4' G B 8 -10.204 14.614 99.029 1.00 29.21 C
ATOM 8 O4' G B 8 -8.935 14.753 98.336 1.00 28.38 O
ATOM 9 C3' G B 8 -9.886 14.713 100.525 1.00 28.81 C
ATOM 10 O3' G B 8 -9.696 13.413 101.109 1.00 28.15 O
ATOM 11 C2' G B 8 -8.569 15.477 100.526 1.00 28.20 C
ATOM 12 O2' G B 8 -7.778 15.297 101.678 1.00 27.65 O
ATOM 13 C1' G B 8 -7.921 14.851 99.304 1.00 27.66 C
ATOM 14 N9 G B 8 -6.735 15.550 98.815 1.00 27.36 N
ATOM 15 C8 G B 8 -6.281 16.802 99.154 1.00 27.66 C
ATOM 16 N7 G B 8 -5.143 17.120 98.585 1.00 27.46 N
ATOM 17 C5 G B 8 -4.835 15.985 97.847 1.00 26.99 C
ATOM 18 C6 G B 8 -3.723 15.709 97.032 1.00 26.85 C
ATOM 19 O6 G B 8 -2.779 16.469 96.819 1.00 27.06 O
ATOM 20 N1 G B 8 -3.773 14.428 96.472 1.00 26.70 N
ATOM 21 C2 G B 8 -4.796 13.523 96.675 1.00 26.69 C
ATOM 22 N2 G B 8 -4.732 12.318 96.076 1.00 26.83 N
ATOM 23 N3 G B 8 -5.837 13.787 97.437 1.00 26.81 N
ATOM 24 C4 G B 8 -5.790 15.014 97.988 1.00 26.94 C
ATOM 25 P A B 9 -10.659 12.966 102.317 1.00 28.63 P
ATOM 26 OP1 A B 9 -12.036 13.410 101.929 1.00 30.12 O
ATOM 27 OP2 A B 9 -10.358 11.533 102.526 1.00 27.93 O
ATOM 28 O5' A B 9 -10.128 13.850 103.527 1.00 28.48 O
TER
ATOM 2 P U A 11 -3.991 20.195 103.084 1.00 44.70 P
ATOM 3 OP1 U A 11 -5.280 19.766 102.504 1.00 35.51 O
ATOM 4 OP2 U A 11 -3.733 21.621 103.329 1.00 45.84 O
ATOM 5 O5' U A 11 -2.852 19.513 102.269 1.00 33.98 O
ATOM 6 C5' U A 11 -1.538 19.637 102.757 1.00 35.80 C
ATOM 7 C4' U A 11 -0.588 19.183 101.698 1.00 31.55 C
ATOM 8 O4' U A 11 -0.673 17.745 101.592 1.00 28.34 O
ATOM 9 C3' U A 11 -0.882 19.723 100.304 1.00 32.19 C
ATOM 10 O3' U A 11 0.341 20.059 99.663 1.00 38.67 O
ATOM 11 C2' U A 11 -1.525 18.546 99.579 1.00 28.20 C
ATOM 12 O2' U A 11 -1.294 18.516 98.183 1.00 29.96 O
ATOM 13 C1' U A 11 -0.855 17.365 100.253 1.00 27.87 C
ATOM 14 N1 U A 11 -1.702 16.163 100.202 1.00 27.10 N
ATOM 15 C2 U A 11 -1.102 15.094 99.582 1.00 26.88 C
ATOM 16 O2 U A 11 0.034 15.198 99.146 1.00 27.33 O
ATOM 17 N3 U A 11 -1.859 13.943 99.506 1.00 26.40 N
ATOM 18 C4 U A 11 -3.152 13.785 99.985 1.00 26.15 C
ATOM 19 O4 U A 11 -3.726 12.682 99.846 1.00 25.95 O
ATOM 20 C5 U A 11 -3.704 14.964 100.610 1.00 26.45 C
ATOM 21 C6 U A 11 -2.983 16.087 100.697 1.00 26.91 C
ATOM 22 P U A 12 1.049 21.438 100.073 1.00 50.75 P
ATOM 23 OP1 U A 12 0.852 21.689 101.535 1.00 49.94 O
ATOM 24 OP2 U A 12 0.547 22.374 99.014 1.00 51.17 O
ATOM 25 O5' U A 12 2.575 21.068 99.892 1.00 48.02 O
TER
ATOM 1 O3' U B 7 -12.238 18.110 97.438 1.00 32.86 O
ATOM 2 P G B 8 -11.565 18.223 98.919 1.00 32.14 P
ATOM 3 OP1 G B 8 -12.746 18.070 99.812 1.00 33.37 O
ATOM 4 OP2 G B 8 -10.648 19.388 99.120 1.00 31.97 O
ATOM 5 O5' G B 8 -10.627 16.947 98.888 1.00 30.53 O
ATOM 6 C5' G B 8 -11.139 15.677 98.522 1.00 30.49 C
ATOM 7 C4' G B 8 -10.204 14.614 99.029 1.00 29.21 C
ATOM 8 O4' G B 8 -8.935 14.753 98.336 1.00 28.38 O
ATOM 9 C3' G B 8 -9.886 14.713 100.525 1.00 28.81 C
ATOM 10 O3' G B 8 -9.696 13.413 101.109 1.00 28.15 O
ATOM 11 C2' G B 8 -8.569 15.477 100.526 1.00 28.20 C
ATOM 12 O2' G B 8 -7.778 15.297 101.678 1.00 27.65 O
ATOM 13 C1' G B 8 -7.921 14.851 99.304 1.00 27.66 C
ATOM 14 N9 G B 8 -6.735 15.550 98.815 1.00 27.36 N
ATOM 15 C8 G B 8 -6.281 16.802 99.154 1.00 27.66 C
ATOM 16 N7 G B 8 -5.143 17.120 98.585 1.00 27.46 N
ATOM 17 C5 G B 8 -4.835 15.985 97.847 1.00 26.99 C
ATOM 18 C6 G B 8 -3.723 15.709 97.032 1.00 26.85 C
ATOM 19 O6 G B 8 -2.779 16.469 96.819 1.00 27.06 O
ATOM 20 N1 G B 8 -3.773 14.428 96.472 1.00 26.70 N
ATOM 21 C2 G B 8 -4.796 13.523 96.675 1.00 26.69 C
ATOM 22 N2 G B 8 -4.732 12.318 96.076 1.00 26.83 N
ATOM 23 N3 G B 8 -5.837 13.787 97.437 1.00 26.81 N
ATOM 24 C4 G B 8 -5.790 15.014 97.988 1.00 26.94 C
ATOM 25 P A B 9 -10.659 12.966 102.317 1.00 28.63 P
ATOM 26 OP1 A B 9 -12.036 13.410 101.929 1.00 30.12 O
ATOM 27 OP2 A B 9 -10.358 11.533 102.526 1.00 27.93 O
ATOM 28 O5' A B 9 -10.128 13.850 103.527 1.00 28.48 O
TER
Atoms:
C4: (-3.152,13.785,99.985)
N3: (-1.859,13.943,99.506)
OP1: (-5.280,19.766,102.504)
OP2: (-3.733,21.621,103.329)
C2: (-1.102,15.094,99.582)
C1': (-0.855,17.365,100.253)
C3': (-0.882,19.723,100.304)
O5': (-2.852,19.513,102.269)
O4': (-0.673,17.745,101.592)
C5': (-1.538,19.637,102.757)
P: (-3.991,20.195,103.084)
C4': (-0.588,19.183,101.698)
C2': (-1.525,18.546,99.579)
O2': (-1.294,18.516,98.183)
N1: (-1.702,16.163,100.202)
O4: (-3.726,12.682,99.846)
O2: (0.034,15.198,99.146)
C6: (-2.983,16.087,100.697)
C5: (-3.704,14.964,100.610)
O3': (0.341,20.059,99.663)
N3: (-1.859,13.943,99.506)
OP1: (-5.280,19.766,102.504)
OP2: (-3.733,21.621,103.329)
C2: (-1.102,15.094,99.582)
C1': (-0.855,17.365,100.253)
C3': (-0.882,19.723,100.304)
O5': (-2.852,19.513,102.269)
O4': (-0.673,17.745,101.592)
C5': (-1.538,19.637,102.757)
P: (-3.991,20.195,103.084)
C4': (-0.588,19.183,101.698)
C2': (-1.525,18.546,99.579)
O2': (-1.294,18.516,98.183)
N1: (-1.702,16.163,100.202)
O4: (-3.726,12.682,99.846)
O2: (0.034,15.198,99.146)
C6: (-2.983,16.087,100.697)
C5: (-3.704,14.964,100.610)
O3': (0.341,20.059,99.663)
OP1: (-12.746,18.070,99.812)
OP2: (-10.648,19.388,99.120)
C3': (-9.886,14.713,100.525)
C1': (-7.921,14.851,99.304)
C5': (-11.139,15.677,98.522)
O6: (-2.779,16.469,96.819)
O4': (-8.935,14.753,98.336)
C8: (-6.281,16.802,99.154)
C2: (-4.796,13.523,96.675)
C6: (-3.723,15.709,97.032)
C5: (-4.835,15.985,97.847)
C4: (-5.790,15.014,97.988)
P: (-11.565,18.223,98.919)
C4': (-10.204,14.614,99.029)
C2': (-8.569,15.477,100.526)
O2': (-7.778,15.297,101.678)
N1: (-3.773,14.428,96.472)
N2: (-4.732,12.318,96.076)
N3: (-5.837,13.787,97.437)
N7: (-5.143,17.120,98.585)
N9: (-6.735,15.550,98.815)
O5': (-10.627,16.947,98.888)
O3': (-9.696,13.413,101.109)
OP2: (-10.648,19.388,99.120)
C3': (-9.886,14.713,100.525)
C1': (-7.921,14.851,99.304)
C5': (-11.139,15.677,98.522)
O6: (-2.779,16.469,96.819)
O4': (-8.935,14.753,98.336)
C8: (-6.281,16.802,99.154)
C2: (-4.796,13.523,96.675)
C6: (-3.723,15.709,97.032)
C5: (-4.835,15.985,97.847)
C4: (-5.790,15.014,97.988)
P: (-11.565,18.223,98.919)
C4': (-10.204,14.614,99.029)
C2': (-8.569,15.477,100.526)
O2': (-7.778,15.297,101.678)
N1: (-3.773,14.428,96.472)
N2: (-4.732,12.318,96.076)
N3: (-5.837,13.787,97.437)
N7: (-5.143,17.120,98.585)
N9: (-6.735,15.550,98.815)
O5': (-10.627,16.947,98.888)
O3': (-9.696,13.413,101.109)
Image (generated by PyMOL):