Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11980:11981
Extra
PDB:
ATOM 1 O3' A A1979 12.950 -2.885 119.759 1.00 45.53 O
ATOM 2 P U A1980 11.712 -2.503 120.684 1.00 48.50 P
ATOM 3 OP1 U A1980 11.716 -1.043 120.848 1.00 48.66 O
ATOM 4 OP2 U A1980 11.771 -3.346 121.883 1.00 48.83 O
ATOM 5 O5' U A1980 10.496 -2.948 119.800 1.00 48.31 O
ATOM 6 C5' U A1980 10.194 -2.304 118.588 1.00 48.00 C
ATOM 7 C4' U A1980 8.955 -2.890 118.019 1.00 47.92 C
ATOM 8 O4' U A1980 9.204 -4.265 117.693 1.00 47.71 O
ATOM 9 C3' U A1980 7.777 -2.957 118.985 1.00 48.36 C
ATOM 10 O3' U A1980 7.082 -1.725 119.054 1.00 48.56 O
ATOM 11 C2' U A1980 6.946 -4.108 118.431 1.00 48.22 C
ATOM 12 O2' U A1980 6.168 -3.659 117.349 1.00 48.01 O
ATOM 13 C1' U A1980 8.025 -5.023 117.863 1.00 47.86 C
ATOM 14 N1 U A1980 8.316 -6.182 118.721 1.00 48.03 N
ATOM 15 C2 U A1980 7.583 -7.295 118.472 1.00 47.99 C
ATOM 16 O2 U A1980 6.754 -7.259 117.617 1.00 47.84 O
ATOM 17 N3 U A1980 7.840 -8.401 119.246 1.00 48.17 N
ATOM 18 C4 U A1980 8.791 -8.508 120.233 1.00 48.36 C
ATOM 19 O4 U A1980 8.941 -9.554 120.854 1.00 48.52 O
ATOM 20 C5 U A1980 9.520 -7.315 120.428 1.00 48.39 C
ATOM 21 C6 U A1980 9.286 -6.222 119.683 1.00 48.22 C
ATOM 22 P G A1981 6.311 -1.294 120.373 1.00 48.26 P
ATOM 23 OP1 G A1981 5.194 -2.248 120.548 1.00 48.39 O
ATOM 24 OP2 G A1981 5.999 0.142 120.234 1.00 48.37 O
ATOM 25 O5' G A1981 7.386 -1.509 121.512 1.00 48.48 O
TER
ATOM 1 O3' U B1980 7.082 -1.725 119.054 1.00 48.56 O
ATOM 2 P G B1981 6.311 -1.294 120.373 1.00 48.26 P
ATOM 3 OP1 G B1981 5.194 -2.248 120.548 1.00 48.39 O
ATOM 4 OP2 G B1981 5.999 0.142 120.234 1.00 48.37 O
ATOM 5 O5' G B1981 7.386 -1.509 121.512 1.00 48.48 O
ATOM 6 C5' G B1981 7.145 -1.020 122.827 1.00 48.99 C
ATOM 7 C4' G B1981 7.467 -2.047 123.884 1.00 49.23 C
ATOM 8 O4' G B1981 6.605 -3.213 123.726 1.00 49.20 O
ATOM 9 C3' G B1981 8.891 -2.573 123.878 1.00 49.03 C
ATOM 10 O3' G B1981 9.277 -2.806 125.220 1.00 49.44 O
ATOM 11 C2' G B1981 8.756 -3.909 123.149 1.00 48.70 C
ATOM 12 O2' G B1981 9.765 -4.839 123.436 1.00 48.63 O
ATOM 13 C1' G B1981 7.398 -4.388 123.646 1.00 49.00 C
ATOM 14 N9 G B1981 6.724 -5.353 122.746 1.00 48.72 N
ATOM 15 C8 G B1981 5.957 -5.058 121.630 1.00 48.46 C
ATOM 16 N7 G B1981 5.471 -6.077 120.971 1.00 48.26 N
ATOM 17 C5 G B1981 5.943 -7.130 121.687 1.00 48.38 C
ATOM 18 C6 G B1981 5.715 -8.492 121.448 1.00 48.28 C
ATOM 19 O6 G B1981 5.085 -9.010 120.538 1.00 48.05 O
ATOM 20 N1 G B1981 6.316 -9.268 122.411 1.00 48.50 N
ATOM 21 C2 G B1981 7.039 -8.757 123.434 1.00 48.77 C
ATOM 22 N2 G B1981 7.517 -9.684 124.217 1.00 48.96 N
ATOM 23 N3 G B1981 7.273 -7.492 123.694 1.00 48.88 N
ATOM 24 C4 G B1981 6.696 -6.723 122.777 1.00 48.67 C
ATOM 25 P U B1982 9.919 -1.631 126.113 1.00 48.05 P
ATOM 26 OP1 U B1982 10.525 -0.651 125.199 1.00 47.73 O
ATOM 27 OP2 U B1982 10.765 -2.304 127.098 1.00 48.27 O
ATOM 28 O5' U B1982 8.689 -0.970 126.847 1.00 48.50 O
TER
ATOM 2 P U A1980 11.712 -2.503 120.684 1.00 48.50 P
ATOM 3 OP1 U A1980 11.716 -1.043 120.848 1.00 48.66 O
ATOM 4 OP2 U A1980 11.771 -3.346 121.883 1.00 48.83 O
ATOM 5 O5' U A1980 10.496 -2.948 119.800 1.00 48.31 O
ATOM 6 C5' U A1980 10.194 -2.304 118.588 1.00 48.00 C
ATOM 7 C4' U A1980 8.955 -2.890 118.019 1.00 47.92 C
ATOM 8 O4' U A1980 9.204 -4.265 117.693 1.00 47.71 O
ATOM 9 C3' U A1980 7.777 -2.957 118.985 1.00 48.36 C
ATOM 10 O3' U A1980 7.082 -1.725 119.054 1.00 48.56 O
ATOM 11 C2' U A1980 6.946 -4.108 118.431 1.00 48.22 C
ATOM 12 O2' U A1980 6.168 -3.659 117.349 1.00 48.01 O
ATOM 13 C1' U A1980 8.025 -5.023 117.863 1.00 47.86 C
ATOM 14 N1 U A1980 8.316 -6.182 118.721 1.00 48.03 N
ATOM 15 C2 U A1980 7.583 -7.295 118.472 1.00 47.99 C
ATOM 16 O2 U A1980 6.754 -7.259 117.617 1.00 47.84 O
ATOM 17 N3 U A1980 7.840 -8.401 119.246 1.00 48.17 N
ATOM 18 C4 U A1980 8.791 -8.508 120.233 1.00 48.36 C
ATOM 19 O4 U A1980 8.941 -9.554 120.854 1.00 48.52 O
ATOM 20 C5 U A1980 9.520 -7.315 120.428 1.00 48.39 C
ATOM 21 C6 U A1980 9.286 -6.222 119.683 1.00 48.22 C
ATOM 22 P G A1981 6.311 -1.294 120.373 1.00 48.26 P
ATOM 23 OP1 G A1981 5.194 -2.248 120.548 1.00 48.39 O
ATOM 24 OP2 G A1981 5.999 0.142 120.234 1.00 48.37 O
ATOM 25 O5' G A1981 7.386 -1.509 121.512 1.00 48.48 O
TER
ATOM 1 O3' U B1980 7.082 -1.725 119.054 1.00 48.56 O
ATOM 2 P G B1981 6.311 -1.294 120.373 1.00 48.26 P
ATOM 3 OP1 G B1981 5.194 -2.248 120.548 1.00 48.39 O
ATOM 4 OP2 G B1981 5.999 0.142 120.234 1.00 48.37 O
ATOM 5 O5' G B1981 7.386 -1.509 121.512 1.00 48.48 O
ATOM 6 C5' G B1981 7.145 -1.020 122.827 1.00 48.99 C
ATOM 7 C4' G B1981 7.467 -2.047 123.884 1.00 49.23 C
ATOM 8 O4' G B1981 6.605 -3.213 123.726 1.00 49.20 O
ATOM 9 C3' G B1981 8.891 -2.573 123.878 1.00 49.03 C
ATOM 10 O3' G B1981 9.277 -2.806 125.220 1.00 49.44 O
ATOM 11 C2' G B1981 8.756 -3.909 123.149 1.00 48.70 C
ATOM 12 O2' G B1981 9.765 -4.839 123.436 1.00 48.63 O
ATOM 13 C1' G B1981 7.398 -4.388 123.646 1.00 49.00 C
ATOM 14 N9 G B1981 6.724 -5.353 122.746 1.00 48.72 N
ATOM 15 C8 G B1981 5.957 -5.058 121.630 1.00 48.46 C
ATOM 16 N7 G B1981 5.471 -6.077 120.971 1.00 48.26 N
ATOM 17 C5 G B1981 5.943 -7.130 121.687 1.00 48.38 C
ATOM 18 C6 G B1981 5.715 -8.492 121.448 1.00 48.28 C
ATOM 19 O6 G B1981 5.085 -9.010 120.538 1.00 48.05 O
ATOM 20 N1 G B1981 6.316 -9.268 122.411 1.00 48.50 N
ATOM 21 C2 G B1981 7.039 -8.757 123.434 1.00 48.77 C
ATOM 22 N2 G B1981 7.517 -9.684 124.217 1.00 48.96 N
ATOM 23 N3 G B1981 7.273 -7.492 123.694 1.00 48.88 N
ATOM 24 C4 G B1981 6.696 -6.723 122.777 1.00 48.67 C
ATOM 25 P U B1982 9.919 -1.631 126.113 1.00 48.05 P
ATOM 26 OP1 U B1982 10.525 -0.651 125.199 1.00 47.73 O
ATOM 27 OP2 U B1982 10.765 -2.304 127.098 1.00 48.27 O
ATOM 28 O5' U B1982 8.689 -0.970 126.847 1.00 48.50 O
TER
Atoms:
C4: (8.791,-8.508,120.233)
N3: (7.840,-8.401,119.246)
OP1: (11.716,-1.043,120.848)
OP2: (11.771,-3.346,121.883)
C2: (7.583,-7.295,118.472)
C1': (8.025,-5.023,117.863)
C3': (7.777,-2.957,118.985)
O5': (10.496,-2.948,119.800)
O4': (9.204,-4.265,117.693)
C5': (10.194,-2.304,118.588)
P: (11.712,-2.503,120.684)
C4': (8.955,-2.890,118.019)
C2': (6.946,-4.108,118.431)
O2': (6.168,-3.659,117.349)
N1: (8.316,-6.182,118.721)
O4: (8.941,-9.554,120.854)
O2: (6.754,-7.259,117.617)
C6: (9.286,-6.222,119.683)
C5: (9.520,-7.315,120.428)
O3': (7.082,-1.725,119.054)
N3: (7.840,-8.401,119.246)
OP1: (11.716,-1.043,120.848)
OP2: (11.771,-3.346,121.883)
C2: (7.583,-7.295,118.472)
C1': (8.025,-5.023,117.863)
C3': (7.777,-2.957,118.985)
O5': (10.496,-2.948,119.800)
O4': (9.204,-4.265,117.693)
C5': (10.194,-2.304,118.588)
P: (11.712,-2.503,120.684)
C4': (8.955,-2.890,118.019)
C2': (6.946,-4.108,118.431)
O2': (6.168,-3.659,117.349)
N1: (8.316,-6.182,118.721)
O4: (8.941,-9.554,120.854)
O2: (6.754,-7.259,117.617)
C6: (9.286,-6.222,119.683)
C5: (9.520,-7.315,120.428)
O3': (7.082,-1.725,119.054)
OP1: (5.194,-2.248,120.548)
OP2: (5.999,0.142,120.234)
C3': (8.891,-2.573,123.878)
C1': (7.398,-4.388,123.646)
C5': (7.145,-1.020,122.827)
O6: (5.085,-9.010,120.538)
O4': (6.605,-3.213,123.726)
C8: (5.957,-5.058,121.630)
C2: (7.039,-8.757,123.434)
C6: (5.715,-8.492,121.448)
C5: (5.943,-7.130,121.687)
C4: (6.696,-6.723,122.777)
P: (6.311,-1.294,120.373)
C4': (7.467,-2.047,123.884)
C2': (8.756,-3.909,123.149)
O2': (9.765,-4.839,123.436)
N1: (6.316,-9.268,122.411)
N2: (7.517,-9.684,124.217)
N3: (7.273,-7.492,123.694)
N7: (5.471,-6.077,120.971)
N9: (6.724,-5.353,122.746)
O5': (7.386,-1.509,121.512)
O3': (9.277,-2.806,125.220)
OP2: (5.999,0.142,120.234)
C3': (8.891,-2.573,123.878)
C1': (7.398,-4.388,123.646)
C5': (7.145,-1.020,122.827)
O6: (5.085,-9.010,120.538)
O4': (6.605,-3.213,123.726)
C8: (5.957,-5.058,121.630)
C2: (7.039,-8.757,123.434)
C6: (5.715,-8.492,121.448)
C5: (5.943,-7.130,121.687)
C4: (6.696,-6.723,122.777)
P: (6.311,-1.294,120.373)
C4': (7.467,-2.047,123.884)
C2': (8.756,-3.909,123.149)
O2': (9.765,-4.839,123.436)
N1: (6.316,-9.268,122.411)
N2: (7.517,-9.684,124.217)
N3: (7.273,-7.492,123.694)
N7: (5.471,-6.077,120.971)
N9: (6.724,-5.353,122.746)
O5': (7.386,-1.509,121.512)
O3': (9.277,-2.806,125.220)
Image (generated by PyMOL):