Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2XD0:V11:V8
Extra
PDB:
ATOM 1 O3' U A 10 -3.656 20.596 -8.955 1.00 79.21 O
ATOM 2 P U A 11 -3.586 21.331 -7.523 1.00 79.31 P
ATOM 3 OP1 U A 11 -2.281 21.180 -6.829 1.00 78.03 O
ATOM 4 OP2 U A 11 -4.074 22.679 -7.889 1.00 81.77 O
ATOM 5 O5' U A 11 -4.682 20.556 -6.690 1.00 78.38 O
ATOM 6 C5' U A 11 -5.982 20.470 -7.249 1.00 79.44 C
ATOM 7 C4' U A 11 -6.958 20.038 -6.200 1.00 78.95 C
ATOM 8 O4' U A 11 -6.897 18.592 -6.060 1.00 76.97 O
ATOM 9 C3' U A 11 -6.650 20.622 -4.832 1.00 78.74 C
ATOM 10 O3' U A 11 -7.871 20.966 -4.186 1.00 79.75 O
ATOM 11 C2' U A 11 -5.945 19.476 -4.109 1.00 76.42 C
ATOM 12 O2' U A 11 -6.046 19.500 -2.699 1.00 75.87 O
ATOM 13 C1' U A 11 -6.630 18.251 -4.711 1.00 75.67 C
ATOM 14 N1 U A 11 -5.763 17.045 -4.644 1.00 73.59 N
ATOM 15 C2 U A 11 -6.195 15.947 -3.902 1.00 72.33 C
ATOM 16 O2 U A 11 -7.264 15.911 -3.309 1.00 72.86 O
ATOM 17 N3 U A 11 -5.320 14.880 -3.884 1.00 70.55 N
ATOM 18 C4 U A 11 -4.089 14.799 -4.517 1.00 69.92 C
ATOM 19 O4 U A 11 -3.416 13.769 -4.415 1.00 68.38 O
ATOM 20 C5 U A 11 -3.716 15.968 -5.257 1.00 71.31 C
ATOM 21 C6 U A 11 -4.544 17.022 -5.294 1.00 73.06 C
ATOM 22 P U A 12 -8.017 22.523 -3.800 1.00 81.71 P
ATOM 23 OP1 U A 12 -7.287 23.160 -4.937 1.00 82.69 O
ATOM 24 OP2 U A 12 -7.564 22.737 -2.378 1.00 80.90 O
ATOM 25 O5' U A 12 -9.581 22.813 -3.917 1.00 83.45 O
TER
ATOM 1 O3' U B 7 5.001 19.717 -2.131 1.00 72.12 O
ATOM 2 P G B 8 4.208 19.307 -3.454 1.00 72.11 P
ATOM 3 OP1 G B 8 5.357 18.887 -4.281 1.00 71.82 O
ATOM 4 OP2 G B 8 3.344 20.427 -3.885 1.00 73.85 O
ATOM 5 O5' G B 8 3.296 18.063 -3.088 1.00 70.49 O
ATOM 6 C5' G B 8 3.766 16.719 -3.102 1.00 68.80 C
ATOM 7 C4' G B 8 2.719 15.763 -3.629 1.00 68.00 C
ATOM 8 O4' G B 8 1.488 15.872 -2.851 1.00 68.16 O
ATOM 9 C3' G B 8 2.313 15.941 -5.095 1.00 68.80 C
ATOM 10 O3' G B 8 2.118 14.666 -5.712 1.00 67.57 O
ATOM 11 C2' G B 8 0.954 16.617 -4.985 1.00 69.93 C
ATOM 12 O2' G B 8 0.103 16.399 -6.082 1.00 70.39 O
ATOM 13 C1' G B 8 0.399 15.926 -3.754 1.00 68.83 C
ATOM 14 N9 G B 8 -0.823 16.555 -3.214 1.00 69.81 N
ATOM 15 C8 G B 8 -1.277 17.820 -3.523 1.00 71.60 C
ATOM 16 N7 G B 8 -2.414 18.123 -2.949 1.00 72.24 N
ATOM 17 C5 G B 8 -2.760 16.980 -2.238 1.00 70.82 C
ATOM 18 C6 G B 8 -3.892 16.710 -1.429 1.00 70.84 C
ATOM 19 O6 G B 8 -4.845 17.452 -1.167 1.00 72.13 O
ATOM 20 N1 G B 8 -3.863 15.434 -0.887 1.00 69.30 N
ATOM 21 C2 G B 8 -2.869 14.519 -1.092 1.00 67.89 C
ATOM 22 N2 G B 8 -3.013 13.322 -0.482 1.00 66.64 N
ATOM 23 N3 G B 8 -1.808 14.767 -1.844 1.00 67.83 N
ATOM 24 C4 G B 8 -1.804 16.001 -2.394 1.00 69.32 C
ATOM 25 P A B 9 2.979 14.128 -6.962 1.00 67.22 P
ATOM 26 OP1 A B 9 4.416 14.316 -6.648 1.00 67.08 O
ATOM 27 OP2 A B 9 2.455 12.774 -7.266 1.00 65.89 O
ATOM 28 O5' A B 9 2.581 15.155 -8.101 1.00 69.03 O
TER
ATOM 2 P U A 11 -3.586 21.331 -7.523 1.00 79.31 P
ATOM 3 OP1 U A 11 -2.281 21.180 -6.829 1.00 78.03 O
ATOM 4 OP2 U A 11 -4.074 22.679 -7.889 1.00 81.77 O
ATOM 5 O5' U A 11 -4.682 20.556 -6.690 1.00 78.38 O
ATOM 6 C5' U A 11 -5.982 20.470 -7.249 1.00 79.44 C
ATOM 7 C4' U A 11 -6.958 20.038 -6.200 1.00 78.95 C
ATOM 8 O4' U A 11 -6.897 18.592 -6.060 1.00 76.97 O
ATOM 9 C3' U A 11 -6.650 20.622 -4.832 1.00 78.74 C
ATOM 10 O3' U A 11 -7.871 20.966 -4.186 1.00 79.75 O
ATOM 11 C2' U A 11 -5.945 19.476 -4.109 1.00 76.42 C
ATOM 12 O2' U A 11 -6.046 19.500 -2.699 1.00 75.87 O
ATOM 13 C1' U A 11 -6.630 18.251 -4.711 1.00 75.67 C
ATOM 14 N1 U A 11 -5.763 17.045 -4.644 1.00 73.59 N
ATOM 15 C2 U A 11 -6.195 15.947 -3.902 1.00 72.33 C
ATOM 16 O2 U A 11 -7.264 15.911 -3.309 1.00 72.86 O
ATOM 17 N3 U A 11 -5.320 14.880 -3.884 1.00 70.55 N
ATOM 18 C4 U A 11 -4.089 14.799 -4.517 1.00 69.92 C
ATOM 19 O4 U A 11 -3.416 13.769 -4.415 1.00 68.38 O
ATOM 20 C5 U A 11 -3.716 15.968 -5.257 1.00 71.31 C
ATOM 21 C6 U A 11 -4.544 17.022 -5.294 1.00 73.06 C
ATOM 22 P U A 12 -8.017 22.523 -3.800 1.00 81.71 P
ATOM 23 OP1 U A 12 -7.287 23.160 -4.937 1.00 82.69 O
ATOM 24 OP2 U A 12 -7.564 22.737 -2.378 1.00 80.90 O
ATOM 25 O5' U A 12 -9.581 22.813 -3.917 1.00 83.45 O
TER
ATOM 1 O3' U B 7 5.001 19.717 -2.131 1.00 72.12 O
ATOM 2 P G B 8 4.208 19.307 -3.454 1.00 72.11 P
ATOM 3 OP1 G B 8 5.357 18.887 -4.281 1.00 71.82 O
ATOM 4 OP2 G B 8 3.344 20.427 -3.885 1.00 73.85 O
ATOM 5 O5' G B 8 3.296 18.063 -3.088 1.00 70.49 O
ATOM 6 C5' G B 8 3.766 16.719 -3.102 1.00 68.80 C
ATOM 7 C4' G B 8 2.719 15.763 -3.629 1.00 68.00 C
ATOM 8 O4' G B 8 1.488 15.872 -2.851 1.00 68.16 O
ATOM 9 C3' G B 8 2.313 15.941 -5.095 1.00 68.80 C
ATOM 10 O3' G B 8 2.118 14.666 -5.712 1.00 67.57 O
ATOM 11 C2' G B 8 0.954 16.617 -4.985 1.00 69.93 C
ATOM 12 O2' G B 8 0.103 16.399 -6.082 1.00 70.39 O
ATOM 13 C1' G B 8 0.399 15.926 -3.754 1.00 68.83 C
ATOM 14 N9 G B 8 -0.823 16.555 -3.214 1.00 69.81 N
ATOM 15 C8 G B 8 -1.277 17.820 -3.523 1.00 71.60 C
ATOM 16 N7 G B 8 -2.414 18.123 -2.949 1.00 72.24 N
ATOM 17 C5 G B 8 -2.760 16.980 -2.238 1.00 70.82 C
ATOM 18 C6 G B 8 -3.892 16.710 -1.429 1.00 70.84 C
ATOM 19 O6 G B 8 -4.845 17.452 -1.167 1.00 72.13 O
ATOM 20 N1 G B 8 -3.863 15.434 -0.887 1.00 69.30 N
ATOM 21 C2 G B 8 -2.869 14.519 -1.092 1.00 67.89 C
ATOM 22 N2 G B 8 -3.013 13.322 -0.482 1.00 66.64 N
ATOM 23 N3 G B 8 -1.808 14.767 -1.844 1.00 67.83 N
ATOM 24 C4 G B 8 -1.804 16.001 -2.394 1.00 69.32 C
ATOM 25 P A B 9 2.979 14.128 -6.962 1.00 67.22 P
ATOM 26 OP1 A B 9 4.416 14.316 -6.648 1.00 67.08 O
ATOM 27 OP2 A B 9 2.455 12.774 -7.266 1.00 65.89 O
ATOM 28 O5' A B 9 2.581 15.155 -8.101 1.00 69.03 O
TER
Atoms:
C4: (-4.089,14.799,-4.517)
N3: (-5.320,14.880,-3.884)
OP1: (-2.281,21.180,-6.829)
OP2: (-4.074,22.679,-7.889)
C2: (-6.195,15.947,-3.902)
C1': (-6.630,18.251,-4.711)
C3': (-6.650,20.622,-4.832)
O5': (-4.682,20.556,-6.690)
O4': (-6.897,18.592,-6.060)
C5': (-5.982,20.470,-7.249)
P: (-3.586,21.331,-7.523)
C4': (-6.958,20.038,-6.200)
C2': (-5.945,19.476,-4.109)
O2': (-6.046,19.500,-2.699)
N1: (-5.763,17.045,-4.644)
O4: (-3.416,13.769,-4.415)
O2: (-7.264,15.911,-3.309)
C6: (-4.544,17.022,-5.294)
C5: (-3.716,15.968,-5.257)
O3': (-7.871,20.966,-4.186)
N3: (-5.320,14.880,-3.884)
OP1: (-2.281,21.180,-6.829)
OP2: (-4.074,22.679,-7.889)
C2: (-6.195,15.947,-3.902)
C1': (-6.630,18.251,-4.711)
C3': (-6.650,20.622,-4.832)
O5': (-4.682,20.556,-6.690)
O4': (-6.897,18.592,-6.060)
C5': (-5.982,20.470,-7.249)
P: (-3.586,21.331,-7.523)
C4': (-6.958,20.038,-6.200)
C2': (-5.945,19.476,-4.109)
O2': (-6.046,19.500,-2.699)
N1: (-5.763,17.045,-4.644)
O4: (-3.416,13.769,-4.415)
O2: (-7.264,15.911,-3.309)
C6: (-4.544,17.022,-5.294)
C5: (-3.716,15.968,-5.257)
O3': (-7.871,20.966,-4.186)
OP1: (5.357,18.887,-4.281)
OP2: (3.344,20.427,-3.885)
C3': (2.313,15.941,-5.095)
C1': (0.399,15.926,-3.754)
C5': (3.766,16.719,-3.102)
O6: (-4.845,17.452,-1.167)
O4': (1.488,15.872,-2.851)
C8: (-1.277,17.820,-3.523)
C2: (-2.869,14.519,-1.092)
C6: (-3.892,16.710,-1.429)
C5: (-2.760,16.980,-2.238)
C4: (-1.804,16.001,-2.394)
P: (4.208,19.307,-3.454)
C4': (2.719,15.763,-3.629)
C2': (0.954,16.617,-4.985)
O2': (0.103,16.399,-6.082)
N1: (-3.863,15.434,-0.887)
N2: (-3.013,13.322,-0.482)
N3: (-1.808,14.767,-1.844)
N7: (-2.414,18.123,-2.949)
N9: (-0.823,16.555,-3.214)
O5': (3.296,18.063,-3.088)
O3': (2.118,14.666,-5.712)
OP2: (3.344,20.427,-3.885)
C3': (2.313,15.941,-5.095)
C1': (0.399,15.926,-3.754)
C5': (3.766,16.719,-3.102)
O6: (-4.845,17.452,-1.167)
O4': (1.488,15.872,-2.851)
C8: (-1.277,17.820,-3.523)
C2: (-2.869,14.519,-1.092)
C6: (-3.892,16.710,-1.429)
C5: (-2.760,16.980,-2.238)
C4: (-1.804,16.001,-2.394)
P: (4.208,19.307,-3.454)
C4': (2.719,15.763,-3.629)
C2': (0.954,16.617,-4.985)
O2': (0.103,16.399,-6.082)
N1: (-3.863,15.434,-0.887)
N2: (-3.013,13.322,-0.482)
N3: (-1.808,14.767,-1.844)
N7: (-2.414,18.123,-2.949)
N9: (-0.823,16.555,-3.214)
O5': (3.296,18.063,-3.088)
O3': (2.118,14.666,-5.712)
Image (generated by PyMOL):