Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:C14:C9
Extra
PDB:
ATOM 1 O3' A A 13 -24.658 -35.497 -3.174 1.00 8.19 O
ATOM 2 P U A 14 -24.596 -36.997 -2.620 1.00 13.76 P
ATOM 3 OP1 U A 14 -23.295 -37.600 -3.016 1.00 12.03 O
ATOM 4 OP2 U A 14 -25.868 -37.698 -2.950 1.00 11.94 O
ATOM 5 O5' U A 14 -24.553 -36.785 -1.041 1.00 17.88 O
ATOM 6 C5' U A 14 -23.433 -36.147 -0.416 1.00 15.32 C
ATOM 7 C4' U A 14 -23.552 -36.217 1.088 1.00 11.82 C
ATOM 8 O4' U A 14 -24.498 -35.217 1.547 1.00 13.00 O
ATOM 9 C3' U A 14 -24.073 -37.542 1.627 1.00 11.07 C
ATOM 10 O3' U A 14 -23.486 -37.783 2.889 1.00 11.40 O
ATOM 11 C2' U A 14 -25.530 -37.222 1.909 1.00 12.15 C
ATOM 12 O2' U A 14 -26.069 -38.121 2.849 1.00 14.19 O
ATOM 13 C1' U A 14 -25.366 -35.816 2.477 1.00 14.34 C
ATOM 14 N1 U A 14 -26.540 -34.948 2.679 1.00 16.66 N
ATOM 15 C2 U A 14 -26.373 -33.833 3.476 1.00 18.75 C
ATOM 16 O2 U A 14 -25.325 -33.566 4.030 1.00 23.74 O
ATOM 17 N3 U A 14 -27.476 -33.041 3.611 1.00 20.79 N
ATOM 18 C4 U A 14 -28.712 -33.241 3.052 1.00 22.18 C
ATOM 19 O4 U A 14 -29.610 -32.406 3.233 1.00 23.80 O
ATOM 20 C5 U A 14 -28.816 -34.427 2.263 1.00 21.51 C
ATOM 21 C6 U A 14 -27.750 -35.218 2.108 1.00 17.91 C
ATOM 22 P A A 15 -21.934 -38.175 2.988 1.00 16.46 P
ATOM 23 OP1 A A 15 -21.424 -38.369 1.606 1.00 13.01 O
ATOM 24 OP2 A A 15 -21.785 -39.266 3.992 1.00 14.10 O
ATOM 25 O5' A A 15 -21.236 -36.862 3.576 1.00 17.27 O
TER
ATOM 1 O3' U B 8 -30.503 -43.359 6.129 1.00 24.60 O
ATOM 2 P G B 9 -29.476 -42.569 5.173 1.00 27.76 P
ATOM 3 OP1 G B 9 -29.474 -43.180 3.816 1.00 28.75 O
ATOM 4 OP2 G B 9 -28.194 -42.449 5.915 1.00 32.24 O
ATOM 5 O5' G B 9 -30.115 -41.115 5.073 1.00 23.67 O
ATOM 6 C5' G B 9 -31.480 -40.961 4.744 1.00 20.65 C
ATOM 7 C4' G B 9 -31.660 -39.735 3.902 1.00 21.02 C
ATOM 8 O4' G B 9 -31.676 -38.553 4.727 1.00 23.79 O
ATOM 9 C3' G B 9 -30.546 -39.472 2.909 1.00 21.79 C
ATOM 10 O3' G B 9 -30.719 -40.269 1.750 1.00 22.65 O
ATOM 11 C2' G B 9 -30.719 -37.987 2.617 1.00 23.16 C
ATOM 12 O2' G B 9 -31.706 -37.754 1.637 1.00 23.74 O
ATOM 13 C1' G B 9 -31.192 -37.456 3.977 1.00 23.67 C
ATOM 14 N9 G B 9 -30.169 -36.773 4.761 1.00 25.61 N
ATOM 15 C8 G B 9 -28.921 -37.242 5.096 1.00 27.46 C
ATOM 16 N7 G B 9 -28.207 -36.368 5.754 1.00 29.11 N
ATOM 17 C5 G B 9 -29.042 -35.261 5.870 1.00 27.48 C
ATOM 18 C6 G B 9 -28.818 -33.997 6.471 1.00 27.47 C
ATOM 19 O6 G B 9 -27.792 -33.571 7.019 1.00 32.00 O
ATOM 20 N1 G B 9 -29.943 -33.188 6.386 1.00 24.07 N
ATOM 21 C2 G B 9 -31.122 -33.541 5.802 1.00 21.48 C
ATOM 22 N2 G B 9 -32.098 -32.635 5.858 1.00 21.99 N
ATOM 23 N3 G B 9 -31.336 -34.699 5.217 1.00 23.19 N
ATOM 24 C4 G B 9 -30.262 -35.506 5.287 1.00 24.56 C
ATOM 25 P C B 10 -29.461 -40.594 0.820 1.00 21.78 P
ATOM 26 OP1 C B 10 -29.966 -41.277 -0.390 1.00 28.17 O
ATOM 27 OP2 C B 10 -28.473 -41.285 1.687 1.00 20.40 O
ATOM 28 O5' C B 10 -28.960 -39.147 0.377 1.00 19.54 O
TER
ATOM 2 P U A 14 -24.596 -36.997 -2.620 1.00 13.76 P
ATOM 3 OP1 U A 14 -23.295 -37.600 -3.016 1.00 12.03 O
ATOM 4 OP2 U A 14 -25.868 -37.698 -2.950 1.00 11.94 O
ATOM 5 O5' U A 14 -24.553 -36.785 -1.041 1.00 17.88 O
ATOM 6 C5' U A 14 -23.433 -36.147 -0.416 1.00 15.32 C
ATOM 7 C4' U A 14 -23.552 -36.217 1.088 1.00 11.82 C
ATOM 8 O4' U A 14 -24.498 -35.217 1.547 1.00 13.00 O
ATOM 9 C3' U A 14 -24.073 -37.542 1.627 1.00 11.07 C
ATOM 10 O3' U A 14 -23.486 -37.783 2.889 1.00 11.40 O
ATOM 11 C2' U A 14 -25.530 -37.222 1.909 1.00 12.15 C
ATOM 12 O2' U A 14 -26.069 -38.121 2.849 1.00 14.19 O
ATOM 13 C1' U A 14 -25.366 -35.816 2.477 1.00 14.34 C
ATOM 14 N1 U A 14 -26.540 -34.948 2.679 1.00 16.66 N
ATOM 15 C2 U A 14 -26.373 -33.833 3.476 1.00 18.75 C
ATOM 16 O2 U A 14 -25.325 -33.566 4.030 1.00 23.74 O
ATOM 17 N3 U A 14 -27.476 -33.041 3.611 1.00 20.79 N
ATOM 18 C4 U A 14 -28.712 -33.241 3.052 1.00 22.18 C
ATOM 19 O4 U A 14 -29.610 -32.406 3.233 1.00 23.80 O
ATOM 20 C5 U A 14 -28.816 -34.427 2.263 1.00 21.51 C
ATOM 21 C6 U A 14 -27.750 -35.218 2.108 1.00 17.91 C
ATOM 22 P A A 15 -21.934 -38.175 2.988 1.00 16.46 P
ATOM 23 OP1 A A 15 -21.424 -38.369 1.606 1.00 13.01 O
ATOM 24 OP2 A A 15 -21.785 -39.266 3.992 1.00 14.10 O
ATOM 25 O5' A A 15 -21.236 -36.862 3.576 1.00 17.27 O
TER
ATOM 1 O3' U B 8 -30.503 -43.359 6.129 1.00 24.60 O
ATOM 2 P G B 9 -29.476 -42.569 5.173 1.00 27.76 P
ATOM 3 OP1 G B 9 -29.474 -43.180 3.816 1.00 28.75 O
ATOM 4 OP2 G B 9 -28.194 -42.449 5.915 1.00 32.24 O
ATOM 5 O5' G B 9 -30.115 -41.115 5.073 1.00 23.67 O
ATOM 6 C5' G B 9 -31.480 -40.961 4.744 1.00 20.65 C
ATOM 7 C4' G B 9 -31.660 -39.735 3.902 1.00 21.02 C
ATOM 8 O4' G B 9 -31.676 -38.553 4.727 1.00 23.79 O
ATOM 9 C3' G B 9 -30.546 -39.472 2.909 1.00 21.79 C
ATOM 10 O3' G B 9 -30.719 -40.269 1.750 1.00 22.65 O
ATOM 11 C2' G B 9 -30.719 -37.987 2.617 1.00 23.16 C
ATOM 12 O2' G B 9 -31.706 -37.754 1.637 1.00 23.74 O
ATOM 13 C1' G B 9 -31.192 -37.456 3.977 1.00 23.67 C
ATOM 14 N9 G B 9 -30.169 -36.773 4.761 1.00 25.61 N
ATOM 15 C8 G B 9 -28.921 -37.242 5.096 1.00 27.46 C
ATOM 16 N7 G B 9 -28.207 -36.368 5.754 1.00 29.11 N
ATOM 17 C5 G B 9 -29.042 -35.261 5.870 1.00 27.48 C
ATOM 18 C6 G B 9 -28.818 -33.997 6.471 1.00 27.47 C
ATOM 19 O6 G B 9 -27.792 -33.571 7.019 1.00 32.00 O
ATOM 20 N1 G B 9 -29.943 -33.188 6.386 1.00 24.07 N
ATOM 21 C2 G B 9 -31.122 -33.541 5.802 1.00 21.48 C
ATOM 22 N2 G B 9 -32.098 -32.635 5.858 1.00 21.99 N
ATOM 23 N3 G B 9 -31.336 -34.699 5.217 1.00 23.19 N
ATOM 24 C4 G B 9 -30.262 -35.506 5.287 1.00 24.56 C
ATOM 25 P C B 10 -29.461 -40.594 0.820 1.00 21.78 P
ATOM 26 OP1 C B 10 -29.966 -41.277 -0.390 1.00 28.17 O
ATOM 27 OP2 C B 10 -28.473 -41.285 1.687 1.00 20.40 O
ATOM 28 O5' C B 10 -28.960 -39.147 0.377 1.00 19.54 O
TER
Atoms:
C4: (-28.712,-33.241,3.052)
N3: (-27.476,-33.041,3.611)
OP1: (-23.295,-37.600,-3.016)
OP2: (-25.868,-37.698,-2.950)
C2: (-26.373,-33.833,3.476)
C1': (-25.366,-35.816,2.477)
C3': (-24.073,-37.542,1.627)
O5': (-24.553,-36.785,-1.041)
O4': (-24.498,-35.217,1.547)
C5': (-23.433,-36.147,-0.416)
P: (-24.596,-36.997,-2.620)
C4': (-23.552,-36.217,1.088)
C2': (-25.530,-37.222,1.909)
O2': (-26.069,-38.121,2.849)
N1: (-26.540,-34.948,2.679)
O4: (-29.610,-32.406,3.233)
O2: (-25.325,-33.566,4.030)
C6: (-27.750,-35.218,2.108)
C5: (-28.816,-34.427,2.263)
O3': (-23.486,-37.783,2.889)
N3: (-27.476,-33.041,3.611)
OP1: (-23.295,-37.600,-3.016)
OP2: (-25.868,-37.698,-2.950)
C2: (-26.373,-33.833,3.476)
C1': (-25.366,-35.816,2.477)
C3': (-24.073,-37.542,1.627)
O5': (-24.553,-36.785,-1.041)
O4': (-24.498,-35.217,1.547)
C5': (-23.433,-36.147,-0.416)
P: (-24.596,-36.997,-2.620)
C4': (-23.552,-36.217,1.088)
C2': (-25.530,-37.222,1.909)
O2': (-26.069,-38.121,2.849)
N1: (-26.540,-34.948,2.679)
O4: (-29.610,-32.406,3.233)
O2: (-25.325,-33.566,4.030)
C6: (-27.750,-35.218,2.108)
C5: (-28.816,-34.427,2.263)
O3': (-23.486,-37.783,2.889)
OP1: (-29.474,-43.180,3.816)
OP2: (-28.194,-42.449,5.915)
C3': (-30.546,-39.472,2.909)
C1': (-31.192,-37.456,3.977)
C5': (-31.480,-40.961,4.744)
O6: (-27.792,-33.571,7.019)
O4': (-31.676,-38.553,4.727)
C8: (-28.921,-37.242,5.096)
C2: (-31.122,-33.541,5.802)
C6: (-28.818,-33.997,6.471)
C5: (-29.042,-35.261,5.870)
C4: (-30.262,-35.506,5.287)
P: (-29.476,-42.569,5.173)
C4': (-31.660,-39.735,3.902)
C2': (-30.719,-37.987,2.617)
O2': (-31.706,-37.754,1.637)
N1: (-29.943,-33.188,6.386)
N2: (-32.098,-32.635,5.858)
N3: (-31.336,-34.699,5.217)
N7: (-28.207,-36.368,5.754)
N9: (-30.169,-36.773,4.761)
O5': (-30.115,-41.115,5.073)
O3': (-30.719,-40.269,1.750)
OP2: (-28.194,-42.449,5.915)
C3': (-30.546,-39.472,2.909)
C1': (-31.192,-37.456,3.977)
C5': (-31.480,-40.961,4.744)
O6: (-27.792,-33.571,7.019)
O4': (-31.676,-38.553,4.727)
C8: (-28.921,-37.242,5.096)
C2: (-31.122,-33.541,5.802)
C6: (-28.818,-33.997,6.471)
C5: (-29.042,-35.261,5.870)
C4: (-30.262,-35.506,5.287)
P: (-29.476,-42.569,5.173)
C4': (-31.660,-39.735,3.902)
C2': (-30.719,-37.987,2.617)
O2': (-31.706,-37.754,1.637)
N1: (-29.943,-33.188,6.386)
N2: (-32.098,-32.635,5.858)
N3: (-31.336,-34.699,5.217)
N7: (-28.207,-36.368,5.754)
N9: (-30.169,-36.773,4.761)
O5': (-30.115,-41.115,5.073)
O3': (-30.719,-40.269,1.750)
Image (generated by PyMOL):