ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1VQ9:0580:0553

Extra

PDB:
ATOM 1 O3' A A 579 -6.450 102.608 106.056 1.00 47.01 O
ATOM 2 P G A 580 -6.444 102.931 104.478 1.00 46.09 P
ATOM 3 OP1 G A 580 -6.260 104.403 104.345 1.00 45.75 O
ATOM 4 OP2 G A 580 -7.624 102.273 103.845 1.00 47.14 O
ATOM 5 O5' G A 580 -5.153 102.169 103.934 1.00 44.71 O
ATOM 6 C5' G A 580 -3.821 102.559 104.334 1.00 41.95 C
ATOM 7 C4' G A 580 -2.816 101.615 103.728 1.00 41.75 C
ATOM 8 O4' G A 580 -3.066 100.281 104.240 1.00 41.56 O
ATOM 9 C3' G A 580 -2.917 101.460 102.220 1.00 42.74 C
ATOM 10 O3' G A 580 -2.139 102.436 101.548 1.00 45.42 O
ATOM 11 C2' G A 580 -2.316 100.079 101.990 1.00 42.12 C
ATOM 12 O2' G A 580 -0.905 100.088 101.985 1.00 45.46 O
ATOM 13 C1' G A 580 -2.815 99.321 103.223 1.00 41.98 C
ATOM 14 N9 G A 580 -4.053 98.599 102.950 1.00 42.12 N
ATOM 15 C8 G A 580 -5.343 99.051 103.134 1.00 42.25 C
ATOM 16 N7 G A 580 -6.245 98.192 102.746 1.00 42.27 N
ATOM 17 C5 G A 580 -5.511 97.105 102.294 1.00 41.47 C
ATOM 18 C6 G A 580 -5.944 95.880 101.757 1.00 40.94 C
ATOM 19 O6 G A 580 -7.101 95.492 101.568 1.00 44.31 O
ATOM 20 N1 G A 580 -4.872 95.058 101.429 1.00 40.78 N
ATOM 21 C2 G A 580 -3.546 95.375 101.608 1.00 41.57 C
ATOM 22 N2 G A 580 -2.649 94.432 101.252 1.00 39.83 N
ATOM 23 N3 G A 580 -3.128 96.526 102.106 1.00 41.11 N
ATOM 24 C4 G A 580 -4.157 97.336 102.425 1.00 41.26 C
ATOM 25 P A A 581 -2.775 103.859 101.154 1.00 47.51 P
ATOM 26 OP1 A A 581 -2.687 104.724 102.368 1.00 45.61 O
ATOM 27 OP2 A A 581 -4.082 103.698 100.461 1.00 46.25 O
ATOM 28 O5' A A 581 -1.734 104.403 100.078 1.00 47.70 O
TER

ATOM 1 O3' G B 552 -5.926 93.563 97.095 1.00 45.52 O
ATOM 2 P A B 553 -5.347 92.698 98.323 1.00 47.99 P
ATOM 3 OP1 A B 553 -5.876 91.318 98.166 1.00 45.10 O
ATOM 4 OP2 A B 553 -5.521 93.416 99.617 1.00 45.82 O
ATOM 5 O5' A B 553 -3.788 92.635 98.000 1.00 46.55 O
ATOM 6 C5' A B 553 -3.326 91.983 96.800 1.00 44.60 C
ATOM 7 C4' A B 553 -1.832 92.132 96.654 1.00 43.21 C
ATOM 8 O4' A B 553 -1.479 93.474 96.233 1.00 43.15 O
ATOM 9 C3' A B 553 -1.028 91.937 97.920 1.00 41.93 C
ATOM 10 O3' A B 553 -0.897 90.555 98.219 1.00 42.91 O
ATOM 11 C2' A B 553 0.291 92.605 97.555 1.00 39.90 C
ATOM 12 O2' A B 553 1.069 91.786 96.704 1.00 38.85 O
ATOM 13 C1' A B 553 -0.200 93.806 96.745 1.00 38.36 C
ATOM 14 N9 A B 553 -0.316 95.062 97.484 1.00 37.37 N
ATOM 15 C8 A B 553 -1.457 95.676 97.935 1.00 36.69 C
ATOM 16 N7 A B 553 -1.240 96.835 98.517 1.00 37.62 N
ATOM 17 C5 A B 553 0.138 96.988 98.454 1.00 36.44 C
ATOM 18 C6 A B 553 0.998 98.018 98.881 1.00 36.86 C
ATOM 19 N6 A B 553 0.586 99.135 99.484 1.00 38.96 N
ATOM 20 N1 A B 553 2.317 97.863 98.661 1.00 37.13 N
ATOM 21 C2 A B 553 2.740 96.746 98.054 1.00 37.21 C
ATOM 22 N3 A B 553 2.037 95.711 97.605 1.00 37.09 N
ATOM 23 C4 A B 553 0.723 95.897 97.836 1.00 38.01 C
ATOM 24 P A B 554 -0.908 90.075 99.751 1.00 42.65 P
ATOM 25 OP1 A B 554 -1.084 88.590 99.723 1.00 39.15 O
ATOM 26 OP2 A B 554 -1.848 90.935 100.543 1.00 39.92 O
ATOM 27 O5' A B 554 0.559 90.410 100.266 1.00 41.72 O
TER

Atoms:
OP1: (-6.260,104.403,104.345)
OP2: (-7.624,102.273,103.845)
C3': (-2.917,101.460,102.220)
C1': (-2.815,99.321,103.223)
C5': (-3.821,102.559,104.334)
O6: (-7.101,95.492,101.568)
O4': (-3.066,100.281,104.240)
C8: (-5.343,99.051,103.134)
C2: (-3.546,95.375,101.608)
C6: (-5.944,95.880,101.757)
C5: (-5.511,97.105,102.294)
C4: (-4.157,97.336,102.425)
P: (-6.444,102.931,104.478)
C4': (-2.816,101.615,103.728)
C2': (-2.316,100.079,101.990)
O2': (-0.905,100.088,101.985)
N1: (-4.872,95.058,101.429)
N2: (-2.649,94.432,101.252)
N3: (-3.128,96.526,102.106)
N7: (-6.245,98.192,102.746)
N9: (-4.053,98.599,102.950)
O5': (-5.153,102.169,103.934)
O3': (-2.139,102.436,101.548)
OP1: (-5.876,91.318,98.166)
OP2: (-5.521,93.416,99.617)
C3': (-1.028,91.937,97.920)
C1': (-0.200,93.806,96.745)
C5': (-3.326,91.983,96.800)
O4': (-1.479,93.474,96.233)
C8: (-1.457,95.676,97.935)
O2': (1.069,91.786,96.704)
C6: (0.998,98.018,98.881)
C5: (0.138,96.988,98.454)
C4: (0.723,95.897,97.836)
P: (-5.347,92.698,98.323)
C4': (-1.832,92.132,96.654)
C2': (0.291,92.605,97.555)
C2: (2.740,96.746,98.054)
N1: (2.317,97.863,98.661)
N3: (2.037,95.711,97.605)
N6: (0.586,99.135,99.484)
N7: (-1.240,96.835,98.517)
N9: (-0.316,95.062,97.484)
O5': (-3.788,92.635,98.000)
O3': (-0.897,90.555,98.219)
Image (generated by PyMOL):
PyMOL image
show in jmol