Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBZ:B57:B55
Extra
PDB:
ATOM 1 O3' C A 56 48.375 57.652 82.374 1.00 73.31 O
ATOM 2 P C A 57 47.580 56.656 81.396 1.00 71.29 P
ATOM 3 OP1 C A 57 46.132 56.787 81.714 1.00 70.72 O
ATOM 4 OP2 C A 57 48.247 55.327 81.476 1.00 70.11 O
ATOM 5 O5' C A 57 47.805 57.261 79.943 1.00 68.35 O
ATOM 6 C5' C A 57 47.121 58.436 79.539 1.00 64.98 C
ATOM 7 C4' C A 57 47.672 58.924 78.229 1.00 62.99 C
ATOM 8 O4' C A 57 49.091 59.153 78.401 1.00 62.62 O
ATOM 9 C3' C A 57 47.572 57.953 77.060 1.00 61.75 C
ATOM 10 O3' C A 57 46.323 58.080 76.383 1.00 58.22 O
ATOM 11 C2' C A 57 48.740 58.374 76.174 1.00 62.16 C
ATOM 12 O2' C A 57 48.394 59.460 75.339 1.00 61.98 O
ATOM 13 C1' C A 57 49.776 58.828 77.208 1.00 62.21 C
ATOM 14 N1 C A 57 50.776 57.810 77.539 1.00 63.66 N
ATOM 15 C2 C A 57 51.705 57.436 76.572 1.00 65.19 C
ATOM 16 O2 C A 57 51.660 57.981 75.461 1.00 65.23 O
ATOM 17 N3 C A 57 52.633 56.491 76.872 1.00 65.91 N
ATOM 18 C4 C A 57 52.647 55.933 78.085 1.00 66.57 C
ATOM 19 N4 C A 57 53.579 55.006 78.343 1.00 67.46 N
ATOM 20 C5 C A 57 51.706 56.300 79.090 1.00 66.12 C
ATOM 21 C6 C A 57 50.798 57.233 78.777 1.00 64.58 C
ATOM 22 P G A 58 45.873 56.946 75.345 1.00 55.56 P
ATOM 23 OP1 G A 58 44.391 56.908 75.223 1.00 54.46 O
ATOM 24 OP2 G A 58 46.613 55.739 75.770 1.00 56.49 O
ATOM 25 O5' G A 58 46.485 57.402 73.948 1.00 54.60 O
TER
ATOM 1 O3' C B 54 54.136 49.233 86.484 1.00 53.16 O
ATOM 2 P U B 55 55.292 49.589 85.445 1.00 59.52 P
ATOM 3 OP1 U B 55 55.400 48.503 84.449 1.00 61.39 O
ATOM 4 OP2 U B 55 56.473 49.970 86.245 1.00 60.28 O
ATOM 5 O5' U B 55 54.736 50.880 84.709 1.00 65.02 O
ATOM 6 C5' U B 55 54.520 52.087 85.436 1.00 71.57 C
ATOM 7 C4' U B 55 54.326 53.235 84.481 1.00 75.16 C
ATOM 8 O4' U B 55 55.584 53.536 83.821 1.00 77.48 O
ATOM 9 C3' U B 55 53.297 52.981 83.384 1.00 76.68 C
ATOM 10 O3' U B 55 52.604 54.185 83.122 1.00 78.16 O
ATOM 11 C2' U B 55 54.156 52.649 82.170 1.00 78.06 C
ATOM 12 O2' U B 55 53.568 53.056 80.955 1.00 78.30 O
ATOM 13 C1' U B 55 55.399 53.497 82.423 1.00 79.82 C
ATOM 14 N1 U B 55 56.602 52.933 81.797 1.00 83.24 N
ATOM 15 C2 U B 55 57.028 53.516 80.620 1.00 85.03 C
ATOM 16 O2 U B 55 56.448 54.467 80.112 1.00 86.27 O
ATOM 17 N3 U B 55 58.151 52.946 80.062 1.00 85.44 N
ATOM 18 C4 U B 55 58.876 51.876 80.560 1.00 85.49 C
ATOM 19 O4 U B 55 59.872 51.475 79.949 1.00 85.84 O
ATOM 20 C5 U B 55 58.370 51.332 81.784 1.00 84.92 C
ATOM 21 C6 U B 55 57.278 51.867 82.348 1.00 84.01 C
ATOM 22 P C B 56 51.345 54.599 84.027 1.00 78.48 P
ATOM 23 OP1 C B 56 51.436 53.888 85.329 1.00 78.48 O
ATOM 24 OP2 C B 56 50.129 54.470 83.190 1.00 77.49 O
ATOM 25 O5' C B 56 51.586 56.151 84.280 1.00 78.74 O
TER
ATOM 2 P C A 57 47.580 56.656 81.396 1.00 71.29 P
ATOM 3 OP1 C A 57 46.132 56.787 81.714 1.00 70.72 O
ATOM 4 OP2 C A 57 48.247 55.327 81.476 1.00 70.11 O
ATOM 5 O5' C A 57 47.805 57.261 79.943 1.00 68.35 O
ATOM 6 C5' C A 57 47.121 58.436 79.539 1.00 64.98 C
ATOM 7 C4' C A 57 47.672 58.924 78.229 1.00 62.99 C
ATOM 8 O4' C A 57 49.091 59.153 78.401 1.00 62.62 O
ATOM 9 C3' C A 57 47.572 57.953 77.060 1.00 61.75 C
ATOM 10 O3' C A 57 46.323 58.080 76.383 1.00 58.22 O
ATOM 11 C2' C A 57 48.740 58.374 76.174 1.00 62.16 C
ATOM 12 O2' C A 57 48.394 59.460 75.339 1.00 61.98 O
ATOM 13 C1' C A 57 49.776 58.828 77.208 1.00 62.21 C
ATOM 14 N1 C A 57 50.776 57.810 77.539 1.00 63.66 N
ATOM 15 C2 C A 57 51.705 57.436 76.572 1.00 65.19 C
ATOM 16 O2 C A 57 51.660 57.981 75.461 1.00 65.23 O
ATOM 17 N3 C A 57 52.633 56.491 76.872 1.00 65.91 N
ATOM 18 C4 C A 57 52.647 55.933 78.085 1.00 66.57 C
ATOM 19 N4 C A 57 53.579 55.006 78.343 1.00 67.46 N
ATOM 20 C5 C A 57 51.706 56.300 79.090 1.00 66.12 C
ATOM 21 C6 C A 57 50.798 57.233 78.777 1.00 64.58 C
ATOM 22 P G A 58 45.873 56.946 75.345 1.00 55.56 P
ATOM 23 OP1 G A 58 44.391 56.908 75.223 1.00 54.46 O
ATOM 24 OP2 G A 58 46.613 55.739 75.770 1.00 56.49 O
ATOM 25 O5' G A 58 46.485 57.402 73.948 1.00 54.60 O
TER
ATOM 1 O3' C B 54 54.136 49.233 86.484 1.00 53.16 O
ATOM 2 P U B 55 55.292 49.589 85.445 1.00 59.52 P
ATOM 3 OP1 U B 55 55.400 48.503 84.449 1.00 61.39 O
ATOM 4 OP2 U B 55 56.473 49.970 86.245 1.00 60.28 O
ATOM 5 O5' U B 55 54.736 50.880 84.709 1.00 65.02 O
ATOM 6 C5' U B 55 54.520 52.087 85.436 1.00 71.57 C
ATOM 7 C4' U B 55 54.326 53.235 84.481 1.00 75.16 C
ATOM 8 O4' U B 55 55.584 53.536 83.821 1.00 77.48 O
ATOM 9 C3' U B 55 53.297 52.981 83.384 1.00 76.68 C
ATOM 10 O3' U B 55 52.604 54.185 83.122 1.00 78.16 O
ATOM 11 C2' U B 55 54.156 52.649 82.170 1.00 78.06 C
ATOM 12 O2' U B 55 53.568 53.056 80.955 1.00 78.30 O
ATOM 13 C1' U B 55 55.399 53.497 82.423 1.00 79.82 C
ATOM 14 N1 U B 55 56.602 52.933 81.797 1.00 83.24 N
ATOM 15 C2 U B 55 57.028 53.516 80.620 1.00 85.03 C
ATOM 16 O2 U B 55 56.448 54.467 80.112 1.00 86.27 O
ATOM 17 N3 U B 55 58.151 52.946 80.062 1.00 85.44 N
ATOM 18 C4 U B 55 58.876 51.876 80.560 1.00 85.49 C
ATOM 19 O4 U B 55 59.872 51.475 79.949 1.00 85.84 O
ATOM 20 C5 U B 55 58.370 51.332 81.784 1.00 84.92 C
ATOM 21 C6 U B 55 57.278 51.867 82.348 1.00 84.01 C
ATOM 22 P C B 56 51.345 54.599 84.027 1.00 78.48 P
ATOM 23 OP1 C B 56 51.436 53.888 85.329 1.00 78.48 O
ATOM 24 OP2 C B 56 50.129 54.470 83.190 1.00 77.49 O
ATOM 25 O5' C B 56 51.586 56.151 84.280 1.00 78.74 O
TER
Atoms:
C2: (51.705,57.436,76.572)
OP1: (46.132,56.787,81.714)
OP2: (48.247,55.327,81.476)
C4: (52.647,55.933,78.085)
O5': (47.805,57.261,79.943)
C3': (47.572,57.953,77.060)
C1': (49.776,58.828,77.208)
O4': (49.091,59.153,78.401)
C5': (47.121,58.436,79.539)
P: (47.580,56.656,81.396)
O2: (51.660,57.981,75.461)
C4': (47.672,58.924,78.229)
C2': (48.740,58.374,76.174)
O2': (48.394,59.460,75.339)
N1: (50.776,57.810,77.539)
N3: (52.633,56.491,76.872)
N4: (53.579,55.006,78.343)
C6: (50.798,57.233,78.777)
C5: (51.706,56.300,79.090)
O3': (46.323,58.080,76.383)
OP1: (46.132,56.787,81.714)
OP2: (48.247,55.327,81.476)
C4: (52.647,55.933,78.085)
O5': (47.805,57.261,79.943)
C3': (47.572,57.953,77.060)
C1': (49.776,58.828,77.208)
O4': (49.091,59.153,78.401)
C5': (47.121,58.436,79.539)
P: (47.580,56.656,81.396)
O2: (51.660,57.981,75.461)
C4': (47.672,58.924,78.229)
C2': (48.740,58.374,76.174)
O2': (48.394,59.460,75.339)
N1: (50.776,57.810,77.539)
N3: (52.633,56.491,76.872)
N4: (53.579,55.006,78.343)
C6: (50.798,57.233,78.777)
C5: (51.706,56.300,79.090)
O3': (46.323,58.080,76.383)
C4: (58.876,51.876,80.560)
N3: (58.151,52.946,80.062)
OP1: (55.400,48.503,84.449)
OP2: (56.473,49.970,86.245)
C2: (57.028,53.516,80.620)
C1': (55.399,53.497,82.423)
C3': (53.297,52.981,83.384)
O5': (54.736,50.880,84.709)
O4': (55.584,53.536,83.821)
C5': (54.520,52.087,85.436)
P: (55.292,49.589,85.445)
C4': (54.326,53.235,84.481)
C2': (54.156,52.649,82.170)
O2': (53.568,53.056,80.955)
N1: (56.602,52.933,81.797)
O4: (59.872,51.475,79.949)
O2: (56.448,54.467,80.112)
C6: (57.278,51.867,82.348)
C5: (58.370,51.332,81.784)
O3': (52.604,54.185,83.122)
N3: (58.151,52.946,80.062)
OP1: (55.400,48.503,84.449)
OP2: (56.473,49.970,86.245)
C2: (57.028,53.516,80.620)
C1': (55.399,53.497,82.423)
C3': (53.297,52.981,83.384)
O5': (54.736,50.880,84.709)
O4': (55.584,53.536,83.821)
C5': (54.520,52.087,85.436)
P: (55.292,49.589,85.445)
C4': (54.326,53.235,84.481)
C2': (54.156,52.649,82.170)
O2': (53.568,53.056,80.955)
N1: (56.602,52.933,81.797)
O4: (59.872,51.475,79.949)
O2: (56.448,54.467,80.112)
C6: (57.278,51.867,82.348)
C5: (58.370,51.332,81.784)
O3': (52.604,54.185,83.122)
Image (generated by PyMOL):