Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VC7:B58:B56
Extra
PDB:
ATOM 1 O3' C A 57 48.988 57.626 83.420 1.00 82.03 O
ATOM 2 P C A 58 48.113 56.820 82.332 1.00 78.21 P
ATOM 3 OP1 C A 58 46.694 57.235 82.515 1.00 75.08 O
ATOM 4 OP2 C A 58 48.470 55.378 82.366 1.00 78.59 O
ATOM 5 O5' C A 58 48.555 57.430 80.935 1.00 77.87 O
ATOM 6 C5' C A 58 47.944 58.631 80.482 1.00 73.61 C
ATOM 7 C4' C A 58 48.504 59.038 79.150 1.00 74.32 C
ATOM 8 O4' C A 58 49.936 59.263 79.286 1.00 82.76 O
ATOM 9 C3' C A 58 48.373 58.015 78.028 1.00 69.82 C
ATOM 10 O3' C A 58 47.062 58.098 77.451 1.00 64.40 O
ATOM 11 C2' C A 58 49.488 58.473 77.086 1.00 74.59 C
ATOM 12 O2' C A 58 49.106 59.595 76.312 1.00 76.59 O
ATOM 13 C1' C A 58 50.584 58.903 78.080 1.00 80.69 C
ATOM 14 N1 C A 58 51.556 57.838 78.386 1.00 85.96 N
ATOM 15 C2 C A 58 52.554 57.551 77.451 1.00 90.69 C
ATOM 16 O2 C A 58 52.618 58.232 76.418 1.00 91.95 O
ATOM 17 N3 C A 58 53.428 56.539 77.697 1.00 95.11 N
ATOM 18 C4 C A 58 53.332 55.831 78.829 1.00 94.85 C
ATOM 19 N4 C A 58 54.194 54.820 79.017 1.00 95.91 N
ATOM 20 C5 C A 58 52.341 56.123 79.815 1.00 89.58 C
ATOM 21 C6 C A 58 51.480 57.125 79.555 1.00 86.68 C
ATOM 22 P G A 59 46.563 56.992 76.382 1.00 56.87 P
ATOM 23 OP1 G A 59 45.085 57.117 76.204 1.00 53.96 O
ATOM 24 OP2 G A 59 47.153 55.672 76.704 1.00 59.63 O
ATOM 25 O5' G A 59 47.174 57.488 75.003 1.00 63.72 O
TER
ATOM 1 O3' C B 55 54.587 49.516 87.479 1.00 72.33 O
ATOM 2 P U B 56 55.764 49.749 86.416 1.00 78.20 P
ATOM 3 OP1 U B 56 55.689 48.595 85.476 1.00 85.96 O
ATOM 4 OP2 U B 56 57.017 50.004 87.165 1.00 83.34 O
ATOM 5 O5' U B 56 55.328 51.066 85.625 1.00 90.25 O
ATOM 6 C5' U B 56 55.019 52.294 86.294 1.00100.89 C
ATOM 7 C4' U B 56 54.855 53.395 85.263 1.00104.92 C
ATOM 8 O4' U B 56 56.150 53.709 84.691 1.00115.21 O
ATOM 9 C3' U B 56 53.958 52.961 84.097 1.00101.70 C
ATOM 10 O3' U B 56 52.547 53.237 84.205 1.00102.65 O
ATOM 11 C2' U B 56 54.567 53.647 82.872 1.00107.32 C
ATOM 12 O2' U B 56 53.864 54.736 82.334 1.00112.73 O
ATOM 13 C1' U B 56 55.980 54.043 83.333 1.00116.39 C
ATOM 14 N1 U B 56 57.008 53.367 82.534 1.00119.19 N
ATOM 15 C2 U B 56 57.500 54.051 81.433 1.00122.00 C
ATOM 16 O2 U B 56 57.159 55.193 81.152 1.00119.49 O
ATOM 17 N3 U B 56 58.406 53.351 80.677 1.00126.10 N
ATOM 18 C4 U B 56 58.869 52.071 80.908 1.00128.90 C
ATOM 19 O4 U B 56 59.676 51.567 80.119 1.00134.84 O
ATOM 20 C5 U B 56 58.332 51.442 82.084 1.00122.12 C
ATOM 21 C6 U B 56 57.444 52.100 82.841 1.00116.84 C
ATOM 22 P C B 57 51.973 54.132 85.430 1.00105.04 P
ATOM 23 OP1 C B 57 52.913 54.171 86.591 1.00108.79 O
ATOM 24 OP2 C B 57 50.578 53.685 85.658 1.00 97.78 O
ATOM 25 O5' C B 57 51.897 55.608 84.802 1.00 99.60 O
TER
ATOM 2 P C A 58 48.113 56.820 82.332 1.00 78.21 P
ATOM 3 OP1 C A 58 46.694 57.235 82.515 1.00 75.08 O
ATOM 4 OP2 C A 58 48.470 55.378 82.366 1.00 78.59 O
ATOM 5 O5' C A 58 48.555 57.430 80.935 1.00 77.87 O
ATOM 6 C5' C A 58 47.944 58.631 80.482 1.00 73.61 C
ATOM 7 C4' C A 58 48.504 59.038 79.150 1.00 74.32 C
ATOM 8 O4' C A 58 49.936 59.263 79.286 1.00 82.76 O
ATOM 9 C3' C A 58 48.373 58.015 78.028 1.00 69.82 C
ATOM 10 O3' C A 58 47.062 58.098 77.451 1.00 64.40 O
ATOM 11 C2' C A 58 49.488 58.473 77.086 1.00 74.59 C
ATOM 12 O2' C A 58 49.106 59.595 76.312 1.00 76.59 O
ATOM 13 C1' C A 58 50.584 58.903 78.080 1.00 80.69 C
ATOM 14 N1 C A 58 51.556 57.838 78.386 1.00 85.96 N
ATOM 15 C2 C A 58 52.554 57.551 77.451 1.00 90.69 C
ATOM 16 O2 C A 58 52.618 58.232 76.418 1.00 91.95 O
ATOM 17 N3 C A 58 53.428 56.539 77.697 1.00 95.11 N
ATOM 18 C4 C A 58 53.332 55.831 78.829 1.00 94.85 C
ATOM 19 N4 C A 58 54.194 54.820 79.017 1.00 95.91 N
ATOM 20 C5 C A 58 52.341 56.123 79.815 1.00 89.58 C
ATOM 21 C6 C A 58 51.480 57.125 79.555 1.00 86.68 C
ATOM 22 P G A 59 46.563 56.992 76.382 1.00 56.87 P
ATOM 23 OP1 G A 59 45.085 57.117 76.204 1.00 53.96 O
ATOM 24 OP2 G A 59 47.153 55.672 76.704 1.00 59.63 O
ATOM 25 O5' G A 59 47.174 57.488 75.003 1.00 63.72 O
TER
ATOM 1 O3' C B 55 54.587 49.516 87.479 1.00 72.33 O
ATOM 2 P U B 56 55.764 49.749 86.416 1.00 78.20 P
ATOM 3 OP1 U B 56 55.689 48.595 85.476 1.00 85.96 O
ATOM 4 OP2 U B 56 57.017 50.004 87.165 1.00 83.34 O
ATOM 5 O5' U B 56 55.328 51.066 85.625 1.00 90.25 O
ATOM 6 C5' U B 56 55.019 52.294 86.294 1.00100.89 C
ATOM 7 C4' U B 56 54.855 53.395 85.263 1.00104.92 C
ATOM 8 O4' U B 56 56.150 53.709 84.691 1.00115.21 O
ATOM 9 C3' U B 56 53.958 52.961 84.097 1.00101.70 C
ATOM 10 O3' U B 56 52.547 53.237 84.205 1.00102.65 O
ATOM 11 C2' U B 56 54.567 53.647 82.872 1.00107.32 C
ATOM 12 O2' U B 56 53.864 54.736 82.334 1.00112.73 O
ATOM 13 C1' U B 56 55.980 54.043 83.333 1.00116.39 C
ATOM 14 N1 U B 56 57.008 53.367 82.534 1.00119.19 N
ATOM 15 C2 U B 56 57.500 54.051 81.433 1.00122.00 C
ATOM 16 O2 U B 56 57.159 55.193 81.152 1.00119.49 O
ATOM 17 N3 U B 56 58.406 53.351 80.677 1.00126.10 N
ATOM 18 C4 U B 56 58.869 52.071 80.908 1.00128.90 C
ATOM 19 O4 U B 56 59.676 51.567 80.119 1.00134.84 O
ATOM 20 C5 U B 56 58.332 51.442 82.084 1.00122.12 C
ATOM 21 C6 U B 56 57.444 52.100 82.841 1.00116.84 C
ATOM 22 P C B 57 51.973 54.132 85.430 1.00105.04 P
ATOM 23 OP1 C B 57 52.913 54.171 86.591 1.00108.79 O
ATOM 24 OP2 C B 57 50.578 53.685 85.658 1.00 97.78 O
ATOM 25 O5' C B 57 51.897 55.608 84.802 1.00 99.60 O
TER
Atoms:
C2: (52.554,57.551,77.451)
OP1: (46.694,57.235,82.515)
OP2: (48.470,55.378,82.366)
C4: (53.332,55.831,78.829)
O5': (48.555,57.430,80.935)
C3': (48.373,58.015,78.028)
C1': (50.584,58.903,78.080)
O4': (49.936,59.263,79.286)
C5': (47.944,58.631,80.482)
P: (48.113,56.820,82.332)
O2: (52.618,58.232,76.418)
C4': (48.504,59.038,79.150)
C2': (49.488,58.473,77.086)
O2': (49.106,59.595,76.312)
N1: (51.556,57.838,78.386)
N3: (53.428,56.539,77.697)
N4: (54.194,54.820,79.017)
C6: (51.480,57.125,79.555)
C5: (52.341,56.123,79.815)
O3': (47.062,58.098,77.451)
OP1: (46.694,57.235,82.515)
OP2: (48.470,55.378,82.366)
C4: (53.332,55.831,78.829)
O5': (48.555,57.430,80.935)
C3': (48.373,58.015,78.028)
C1': (50.584,58.903,78.080)
O4': (49.936,59.263,79.286)
C5': (47.944,58.631,80.482)
P: (48.113,56.820,82.332)
O2: (52.618,58.232,76.418)
C4': (48.504,59.038,79.150)
C2': (49.488,58.473,77.086)
O2': (49.106,59.595,76.312)
N1: (51.556,57.838,78.386)
N3: (53.428,56.539,77.697)
N4: (54.194,54.820,79.017)
C6: (51.480,57.125,79.555)
C5: (52.341,56.123,79.815)
O3': (47.062,58.098,77.451)
C4: (58.869,52.071,80.908)
N3: (58.406,53.351,80.677)
OP1: (55.689,48.595,85.476)
OP2: (57.017,50.004,87.165)
C2: (57.500,54.051,81.433)
C1': (55.980,54.043,83.333)
C3': (53.958,52.961,84.097)
O5': (55.328,51.066,85.625)
O4': (56.150,53.709,84.691)
C5': (55.019,52.294,86.294)
P: (55.764,49.749,86.416)
C4': (54.855,53.395,85.263)
C2': (54.567,53.647,82.872)
O2': (53.864,54.736,82.334)
N1: (57.008,53.367,82.534)
O4: (59.676,51.567,80.119)
O2: (57.159,55.193,81.152)
C6: (57.444,52.100,82.841)
C5: (58.332,51.442,82.084)
O3': (52.547,53.237,84.205)
N3: (58.406,53.351,80.677)
OP1: (55.689,48.595,85.476)
OP2: (57.017,50.004,87.165)
C2: (57.500,54.051,81.433)
C1': (55.980,54.043,83.333)
C3': (53.958,52.961,84.097)
O5': (55.328,51.066,85.625)
O4': (56.150,53.709,84.691)
C5': (55.019,52.294,86.294)
P: (55.764,49.749,86.416)
C4': (54.855,53.395,85.263)
C2': (54.567,53.647,82.872)
O2': (53.864,54.736,82.334)
N1: (57.008,53.367,82.534)
O4: (59.676,51.567,80.119)
O2: (57.159,55.193,81.152)
C6: (57.444,52.100,82.841)
C5: (58.332,51.442,82.084)
O3': (52.547,53.237,84.205)
Image (generated by PyMOL):