Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0580:0553
Extra
PDB:
ATOM 1 O3' A A 579 -6.118 103.584 106.132 1.00 60.18 O
ATOM 2 P G A 580 -6.056 103.995 104.578 1.00 60.85 P
ATOM 3 OP1 G A 580 -5.733 105.447 104.544 1.00 59.54 O
ATOM 4 OP2 G A 580 -7.261 103.488 103.862 1.00 60.04 O
ATOM 5 O5' G A 580 -4.818 103.175 104.005 1.00 61.03 O
ATOM 6 C5' G A 580 -3.468 103.490 104.390 1.00 58.69 C
ATOM 7 C4' G A 580 -2.518 102.521 103.740 1.00 57.46 C
ATOM 8 O4' G A 580 -2.819 101.182 104.212 1.00 57.55 O
ATOM 9 C3' G A 580 -2.650 102.421 102.230 1.00 56.18 C
ATOM 10 O3' G A 580 -1.889 103.417 101.573 1.00 56.04 O
ATOM 11 C2' G A 580 -2.102 101.030 101.948 1.00 56.93 C
ATOM 12 O2' G A 580 -0.689 100.994 101.917 1.00 57.27 O
ATOM 13 C1' G A 580 -2.632 100.252 103.157 1.00 57.25 C
ATOM 14 N9 G A 580 -3.915 99.618 102.877 1.00 57.44 N
ATOM 15 C8 G A 580 -5.169 100.136 103.106 1.00 58.14 C
ATOM 16 N7 G A 580 -6.127 99.344 102.713 1.00 59.93 N
ATOM 17 C5 G A 580 -5.468 98.234 102.202 1.00 57.93 C
ATOM 18 C6 G A 580 -5.981 97.045 101.630 1.00 58.44 C
ATOM 19 O6 G A 580 -7.162 96.715 101.462 1.00 60.17 O
ATOM 20 N1 G A 580 -4.961 96.187 101.241 1.00 58.83 N
ATOM 21 C2 G A 580 -3.619 96.434 101.394 1.00 58.42 C
ATOM 22 N2 G A 580 -2.787 95.477 100.966 1.00 58.29 N
ATOM 23 N3 G A 580 -3.130 97.535 101.930 1.00 57.80 N
ATOM 24 C4 G A 580 -4.103 98.386 102.306 1.00 57.36 C
ATOM 25 P A A 581 -2.630 104.661 100.886 1.00 56.53 P
ATOM 26 OP1 A A 581 -2.766 105.706 101.934 1.00 55.25 O
ATOM 27 OP2 A A 581 -3.831 104.174 100.163 1.00 55.35 O
ATOM 28 O5' A A 581 -1.594 105.174 99.791 1.00 56.75 O
TER
ATOM 1 O3' G B 552 -5.624 94.624 96.697 1.00 54.17 O
ATOM 2 P A B 553 -5.095 93.727 97.922 1.00 54.20 P
ATOM 3 OP1 A B 553 -5.669 92.368 97.750 1.00 50.98 O
ATOM 4 OP2 A B 553 -5.294 94.460 99.205 1.00 52.38 O
ATOM 5 O5' A B 553 -3.537 93.594 97.629 1.00 51.58 O
ATOM 6 C5' A B 553 -3.087 92.877 96.464 1.00 51.23 C
ATOM 7 C4' A B 553 -1.588 92.947 96.335 1.00 48.96 C
ATOM 8 O4' A B 553 -1.172 94.267 95.903 1.00 47.84 O
ATOM 9 C3' A B 553 -0.804 92.715 97.608 1.00 48.10 C
ATOM 10 O3' A B 553 -0.707 91.334 97.909 1.00 48.09 O
ATOM 11 C2' A B 553 0.537 93.329 97.250 1.00 47.47 C
ATOM 12 O2' A B 553 1.252 92.472 96.380 1.00 45.54 O
ATOM 13 C1' A B 553 0.091 94.568 96.470 1.00 46.14 C
ATOM 14 N9 A B 553 -0.049 95.791 97.264 1.00 44.78 N
ATOM 15 C8 A B 553 -1.206 96.322 97.775 1.00 45.07 C
ATOM 16 N7 A B 553 -1.037 97.469 98.390 1.00 46.20 N
ATOM 17 C5 A B 553 0.326 97.704 98.293 1.00 46.51 C
ATOM 18 C6 A B 553 1.144 98.771 98.737 1.00 47.21 C
ATOM 19 N6 A B 553 0.684 99.840 99.387 1.00 47.25 N
ATOM 20 N1 A B 553 2.465 98.698 98.479 1.00 46.73 N
ATOM 21 C2 A B 553 2.927 97.629 97.815 1.00 47.04 C
ATOM 22 N3 A B 553 2.263 96.571 97.342 1.00 46.02 N
ATOM 23 C4 A B 553 0.951 96.670 97.616 1.00 45.93 C
ATOM 24 P A B 554 -0.819 90.845 99.437 1.00 49.58 P
ATOM 25 OP1 A B 554 -1.024 89.366 99.406 1.00 47.18 O
ATOM 26 OP2 A B 554 -1.786 91.712 100.171 1.00 47.78 O
ATOM 27 O5' A B 554 0.615 91.155 100.055 1.00 49.28 O
TER
ATOM 2 P G A 580 -6.056 103.995 104.578 1.00 60.85 P
ATOM 3 OP1 G A 580 -5.733 105.447 104.544 1.00 59.54 O
ATOM 4 OP2 G A 580 -7.261 103.488 103.862 1.00 60.04 O
ATOM 5 O5' G A 580 -4.818 103.175 104.005 1.00 61.03 O
ATOM 6 C5' G A 580 -3.468 103.490 104.390 1.00 58.69 C
ATOM 7 C4' G A 580 -2.518 102.521 103.740 1.00 57.46 C
ATOM 8 O4' G A 580 -2.819 101.182 104.212 1.00 57.55 O
ATOM 9 C3' G A 580 -2.650 102.421 102.230 1.00 56.18 C
ATOM 10 O3' G A 580 -1.889 103.417 101.573 1.00 56.04 O
ATOM 11 C2' G A 580 -2.102 101.030 101.948 1.00 56.93 C
ATOM 12 O2' G A 580 -0.689 100.994 101.917 1.00 57.27 O
ATOM 13 C1' G A 580 -2.632 100.252 103.157 1.00 57.25 C
ATOM 14 N9 G A 580 -3.915 99.618 102.877 1.00 57.44 N
ATOM 15 C8 G A 580 -5.169 100.136 103.106 1.00 58.14 C
ATOM 16 N7 G A 580 -6.127 99.344 102.713 1.00 59.93 N
ATOM 17 C5 G A 580 -5.468 98.234 102.202 1.00 57.93 C
ATOM 18 C6 G A 580 -5.981 97.045 101.630 1.00 58.44 C
ATOM 19 O6 G A 580 -7.162 96.715 101.462 1.00 60.17 O
ATOM 20 N1 G A 580 -4.961 96.187 101.241 1.00 58.83 N
ATOM 21 C2 G A 580 -3.619 96.434 101.394 1.00 58.42 C
ATOM 22 N2 G A 580 -2.787 95.477 100.966 1.00 58.29 N
ATOM 23 N3 G A 580 -3.130 97.535 101.930 1.00 57.80 N
ATOM 24 C4 G A 580 -4.103 98.386 102.306 1.00 57.36 C
ATOM 25 P A A 581 -2.630 104.661 100.886 1.00 56.53 P
ATOM 26 OP1 A A 581 -2.766 105.706 101.934 1.00 55.25 O
ATOM 27 OP2 A A 581 -3.831 104.174 100.163 1.00 55.35 O
ATOM 28 O5' A A 581 -1.594 105.174 99.791 1.00 56.75 O
TER
ATOM 1 O3' G B 552 -5.624 94.624 96.697 1.00 54.17 O
ATOM 2 P A B 553 -5.095 93.727 97.922 1.00 54.20 P
ATOM 3 OP1 A B 553 -5.669 92.368 97.750 1.00 50.98 O
ATOM 4 OP2 A B 553 -5.294 94.460 99.205 1.00 52.38 O
ATOM 5 O5' A B 553 -3.537 93.594 97.629 1.00 51.58 O
ATOM 6 C5' A B 553 -3.087 92.877 96.464 1.00 51.23 C
ATOM 7 C4' A B 553 -1.588 92.947 96.335 1.00 48.96 C
ATOM 8 O4' A B 553 -1.172 94.267 95.903 1.00 47.84 O
ATOM 9 C3' A B 553 -0.804 92.715 97.608 1.00 48.10 C
ATOM 10 O3' A B 553 -0.707 91.334 97.909 1.00 48.09 O
ATOM 11 C2' A B 553 0.537 93.329 97.250 1.00 47.47 C
ATOM 12 O2' A B 553 1.252 92.472 96.380 1.00 45.54 O
ATOM 13 C1' A B 553 0.091 94.568 96.470 1.00 46.14 C
ATOM 14 N9 A B 553 -0.049 95.791 97.264 1.00 44.78 N
ATOM 15 C8 A B 553 -1.206 96.322 97.775 1.00 45.07 C
ATOM 16 N7 A B 553 -1.037 97.469 98.390 1.00 46.20 N
ATOM 17 C5 A B 553 0.326 97.704 98.293 1.00 46.51 C
ATOM 18 C6 A B 553 1.144 98.771 98.737 1.00 47.21 C
ATOM 19 N6 A B 553 0.684 99.840 99.387 1.00 47.25 N
ATOM 20 N1 A B 553 2.465 98.698 98.479 1.00 46.73 N
ATOM 21 C2 A B 553 2.927 97.629 97.815 1.00 47.04 C
ATOM 22 N3 A B 553 2.263 96.571 97.342 1.00 46.02 N
ATOM 23 C4 A B 553 0.951 96.670 97.616 1.00 45.93 C
ATOM 24 P A B 554 -0.819 90.845 99.437 1.00 49.58 P
ATOM 25 OP1 A B 554 -1.024 89.366 99.406 1.00 47.18 O
ATOM 26 OP2 A B 554 -1.786 91.712 100.171 1.00 47.78 O
ATOM 27 O5' A B 554 0.615 91.155 100.055 1.00 49.28 O
TER
Atoms:
OP1: (-5.733,105.447,104.544)
OP2: (-7.261,103.488,103.862)
C3': (-2.650,102.421,102.230)
C1': (-2.632,100.252,103.157)
C5': (-3.468,103.490,104.390)
O6: (-7.162,96.715,101.462)
O4': (-2.819,101.182,104.212)
C8: (-5.169,100.136,103.106)
C2: (-3.619,96.434,101.394)
C6: (-5.981,97.045,101.630)
C5: (-5.468,98.234,102.202)
C4: (-4.103,98.386,102.306)
P: (-6.056,103.995,104.578)
C4': (-2.518,102.521,103.740)
C2': (-2.102,101.030,101.948)
O2': (-0.689,100.994,101.917)
N1: (-4.961,96.187,101.241)
N2: (-2.787,95.477,100.966)
N3: (-3.130,97.535,101.930)
N7: (-6.127,99.344,102.713)
N9: (-3.915,99.618,102.877)
O5': (-4.818,103.175,104.005)
O3': (-1.889,103.417,101.573)
OP2: (-7.261,103.488,103.862)
C3': (-2.650,102.421,102.230)
C1': (-2.632,100.252,103.157)
C5': (-3.468,103.490,104.390)
O6: (-7.162,96.715,101.462)
O4': (-2.819,101.182,104.212)
C8: (-5.169,100.136,103.106)
C2: (-3.619,96.434,101.394)
C6: (-5.981,97.045,101.630)
C5: (-5.468,98.234,102.202)
C4: (-4.103,98.386,102.306)
P: (-6.056,103.995,104.578)
C4': (-2.518,102.521,103.740)
C2': (-2.102,101.030,101.948)
O2': (-0.689,100.994,101.917)
N1: (-4.961,96.187,101.241)
N2: (-2.787,95.477,100.966)
N3: (-3.130,97.535,101.930)
N7: (-6.127,99.344,102.713)
N9: (-3.915,99.618,102.877)
O5': (-4.818,103.175,104.005)
O3': (-1.889,103.417,101.573)
OP1: (-5.669,92.368,97.750)
OP2: (-5.294,94.460,99.205)
C3': (-0.804,92.715,97.608)
C1': (0.091,94.568,96.470)
C5': (-3.087,92.877,96.464)
O4': (-1.172,94.267,95.903)
C8: (-1.206,96.322,97.775)
O2': (1.252,92.472,96.380)
C6: (1.144,98.771,98.737)
C5: (0.326,97.704,98.293)
C4: (0.951,96.670,97.616)
P: (-5.095,93.727,97.922)
C4': (-1.588,92.947,96.335)
C2': (0.537,93.329,97.250)
C2: (2.927,97.629,97.815)
N1: (2.465,98.698,98.479)
N3: (2.263,96.571,97.342)
N6: (0.684,99.840,99.387)
N7: (-1.037,97.469,98.390)
N9: (-0.049,95.791,97.264)
O5': (-3.537,93.594,97.629)
O3': (-0.707,91.334,97.909)
OP2: (-5.294,94.460,99.205)
C3': (-0.804,92.715,97.608)
C1': (0.091,94.568,96.470)
C5': (-3.087,92.877,96.464)
O4': (-1.172,94.267,95.903)
C8: (-1.206,96.322,97.775)
O2': (1.252,92.472,96.380)
C6: (1.144,98.771,98.737)
C5: (0.326,97.704,98.293)
C4: (0.951,96.670,97.616)
P: (-5.095,93.727,97.922)
C4': (-1.588,92.947,96.335)
C2': (0.537,93.329,97.250)
C2: (2.927,97.629,97.815)
N1: (2.465,98.698,98.479)
N3: (2.263,96.571,97.342)
N6: (0.684,99.840,99.387)
N7: (-1.037,97.469,98.390)
N9: (-0.049,95.791,97.264)
O5': (-3.537,93.594,97.629)
O3': (-0.707,91.334,97.909)
Image (generated by PyMOL):