Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0580:0553
Extra
PDB:
ATOM 1 O3' A A 579 -6.129 103.766 106.557 1.00 69.96 O
ATOM 2 P G A 580 -6.113 104.211 105.014 1.00 70.94 P
ATOM 3 OP1 G A 580 -5.822 105.676 104.988 1.00 69.07 O
ATOM 4 OP2 G A 580 -7.341 103.686 104.352 1.00 70.32 O
ATOM 5 O5' G A 580 -4.884 103.412 104.385 1.00 71.15 O
ATOM 6 C5' G A 580 -3.514 103.793 104.657 1.00 68.03 C
ATOM 7 C4' G A 580 -2.567 102.836 103.974 1.00 64.80 C
ATOM 8 O4' G A 580 -2.798 101.502 104.493 1.00 63.37 O
ATOM 9 C3' G A 580 -2.765 102.696 102.475 1.00 64.02 C
ATOM 10 O3' G A 580 -2.024 103.670 101.759 1.00 64.00 O
ATOM 11 C2' G A 580 -2.200 101.312 102.199 1.00 64.28 C
ATOM 12 O2' G A 580 -0.793 101.304 102.100 1.00 66.41 O
ATOM 13 C1' G A 580 -2.629 100.552 103.455 1.00 63.79 C
ATOM 14 N9 G A 580 -3.894 99.859 103.259 1.00 62.62 N
ATOM 15 C8 G A 580 -5.144 100.310 103.598 1.00 64.67 C
ATOM 16 N7 G A 580 -6.093 99.482 103.264 1.00 66.19 N
ATOM 17 C5 G A 580 -5.428 98.419 102.676 1.00 63.05 C
ATOM 18 C6 G A 580 -5.932 97.226 102.118 1.00 62.83 C
ATOM 19 O6 G A 580 -7.104 96.853 102.027 1.00 64.53 O
ATOM 20 N1 G A 580 -4.912 96.421 101.635 1.00 63.39 N
ATOM 21 C2 G A 580 -3.578 96.724 101.686 1.00 62.94 C
ATOM 22 N2 G A 580 -2.752 95.811 101.173 1.00 63.46 N
ATOM 23 N3 G A 580 -3.093 97.837 102.204 1.00 62.46 N
ATOM 24 C4 G A 580 -4.069 98.633 102.676 1.00 62.29 C
ATOM 25 P A A 581 -2.722 105.041 101.309 1.00 65.27 P
ATOM 26 OP1 A A 581 -2.716 105.930 102.503 1.00 64.77 O
ATOM 27 OP2 A A 581 -3.995 104.758 100.601 1.00 64.61 O
ATOM 28 O5' A A 581 -1.710 105.644 100.241 1.00 66.14 O
TER
ATOM 1 O3' G B 552 -5.475 94.979 97.053 1.00 67.42 O
ATOM 2 P A B 553 -5.020 94.060 98.295 1.00 66.34 P
ATOM 3 OP1 A B 553 -5.725 92.759 98.174 1.00 64.48 O
ATOM 4 OP2 A B 553 -5.115 94.837 99.556 1.00 64.86 O
ATOM 5 O5' A B 553 -3.482 93.787 98.007 1.00 65.46 O
ATOM 6 C5' A B 553 -3.072 93.069 96.830 1.00 63.99 C
ATOM 7 C4' A B 553 -1.579 93.166 96.662 1.00 62.43 C
ATOM 8 O4' A B 553 -1.208 94.515 96.283 1.00 60.96 O
ATOM 9 C3' A B 553 -0.777 92.914 97.924 1.00 61.88 C
ATOM 10 O3' A B 553 -0.631 91.525 98.176 1.00 62.09 O
ATOM 11 C2' A B 553 0.542 93.588 97.594 1.00 61.24 C
ATOM 12 O2' A B 553 1.307 92.770 96.727 1.00 60.53 O
ATOM 13 C1' A B 553 0.058 94.828 96.835 1.00 60.20 C
ATOM 14 N9 A B 553 -0.077 96.051 97.631 1.00 59.58 N
ATOM 15 C8 A B 553 -1.224 96.580 98.166 1.00 59.47 C
ATOM 16 N7 A B 553 -1.041 97.719 98.791 1.00 60.73 N
ATOM 17 C5 A B 553 0.322 97.955 98.671 1.00 59.87 C
ATOM 18 C6 A B 553 1.155 99.016 99.114 1.00 60.20 C
ATOM 19 N6 A B 553 0.721 100.077 99.802 1.00 58.54 N
ATOM 20 N1 A B 553 2.468 98.945 98.820 1.00 59.09 N
ATOM 21 C2 A B 553 2.910 97.884 98.138 1.00 60.12 C
ATOM 22 N3 A B 553 2.236 96.831 97.671 1.00 59.63 N
ATOM 23 C4 A B 553 0.931 96.928 97.970 1.00 60.05 C
ATOM 24 P A B 554 -0.681 90.985 99.690 1.00 62.94 P
ATOM 25 OP1 A B 554 -0.742 89.494 99.610 1.00 60.35 O
ATOM 26 OP2 A B 554 -1.737 91.732 100.432 1.00 62.02 O
ATOM 27 O5' A B 554 0.728 91.415 100.306 1.00 61.60 O
TER
ATOM 2 P G A 580 -6.113 104.211 105.014 1.00 70.94 P
ATOM 3 OP1 G A 580 -5.822 105.676 104.988 1.00 69.07 O
ATOM 4 OP2 G A 580 -7.341 103.686 104.352 1.00 70.32 O
ATOM 5 O5' G A 580 -4.884 103.412 104.385 1.00 71.15 O
ATOM 6 C5' G A 580 -3.514 103.793 104.657 1.00 68.03 C
ATOM 7 C4' G A 580 -2.567 102.836 103.974 1.00 64.80 C
ATOM 8 O4' G A 580 -2.798 101.502 104.493 1.00 63.37 O
ATOM 9 C3' G A 580 -2.765 102.696 102.475 1.00 64.02 C
ATOM 10 O3' G A 580 -2.024 103.670 101.759 1.00 64.00 O
ATOM 11 C2' G A 580 -2.200 101.312 102.199 1.00 64.28 C
ATOM 12 O2' G A 580 -0.793 101.304 102.100 1.00 66.41 O
ATOM 13 C1' G A 580 -2.629 100.552 103.455 1.00 63.79 C
ATOM 14 N9 G A 580 -3.894 99.859 103.259 1.00 62.62 N
ATOM 15 C8 G A 580 -5.144 100.310 103.598 1.00 64.67 C
ATOM 16 N7 G A 580 -6.093 99.482 103.264 1.00 66.19 N
ATOM 17 C5 G A 580 -5.428 98.419 102.676 1.00 63.05 C
ATOM 18 C6 G A 580 -5.932 97.226 102.118 1.00 62.83 C
ATOM 19 O6 G A 580 -7.104 96.853 102.027 1.00 64.53 O
ATOM 20 N1 G A 580 -4.912 96.421 101.635 1.00 63.39 N
ATOM 21 C2 G A 580 -3.578 96.724 101.686 1.00 62.94 C
ATOM 22 N2 G A 580 -2.752 95.811 101.173 1.00 63.46 N
ATOM 23 N3 G A 580 -3.093 97.837 102.204 1.00 62.46 N
ATOM 24 C4 G A 580 -4.069 98.633 102.676 1.00 62.29 C
ATOM 25 P A A 581 -2.722 105.041 101.309 1.00 65.27 P
ATOM 26 OP1 A A 581 -2.716 105.930 102.503 1.00 64.77 O
ATOM 27 OP2 A A 581 -3.995 104.758 100.601 1.00 64.61 O
ATOM 28 O5' A A 581 -1.710 105.644 100.241 1.00 66.14 O
TER
ATOM 1 O3' G B 552 -5.475 94.979 97.053 1.00 67.42 O
ATOM 2 P A B 553 -5.020 94.060 98.295 1.00 66.34 P
ATOM 3 OP1 A B 553 -5.725 92.759 98.174 1.00 64.48 O
ATOM 4 OP2 A B 553 -5.115 94.837 99.556 1.00 64.86 O
ATOM 5 O5' A B 553 -3.482 93.787 98.007 1.00 65.46 O
ATOM 6 C5' A B 553 -3.072 93.069 96.830 1.00 63.99 C
ATOM 7 C4' A B 553 -1.579 93.166 96.662 1.00 62.43 C
ATOM 8 O4' A B 553 -1.208 94.515 96.283 1.00 60.96 O
ATOM 9 C3' A B 553 -0.777 92.914 97.924 1.00 61.88 C
ATOM 10 O3' A B 553 -0.631 91.525 98.176 1.00 62.09 O
ATOM 11 C2' A B 553 0.542 93.588 97.594 1.00 61.24 C
ATOM 12 O2' A B 553 1.307 92.770 96.727 1.00 60.53 O
ATOM 13 C1' A B 553 0.058 94.828 96.835 1.00 60.20 C
ATOM 14 N9 A B 553 -0.077 96.051 97.631 1.00 59.58 N
ATOM 15 C8 A B 553 -1.224 96.580 98.166 1.00 59.47 C
ATOM 16 N7 A B 553 -1.041 97.719 98.791 1.00 60.73 N
ATOM 17 C5 A B 553 0.322 97.955 98.671 1.00 59.87 C
ATOM 18 C6 A B 553 1.155 99.016 99.114 1.00 60.20 C
ATOM 19 N6 A B 553 0.721 100.077 99.802 1.00 58.54 N
ATOM 20 N1 A B 553 2.468 98.945 98.820 1.00 59.09 N
ATOM 21 C2 A B 553 2.910 97.884 98.138 1.00 60.12 C
ATOM 22 N3 A B 553 2.236 96.831 97.671 1.00 59.63 N
ATOM 23 C4 A B 553 0.931 96.928 97.970 1.00 60.05 C
ATOM 24 P A B 554 -0.681 90.985 99.690 1.00 62.94 P
ATOM 25 OP1 A B 554 -0.742 89.494 99.610 1.00 60.35 O
ATOM 26 OP2 A B 554 -1.737 91.732 100.432 1.00 62.02 O
ATOM 27 O5' A B 554 0.728 91.415 100.306 1.00 61.60 O
TER
Atoms:
OP1: (-5.822,105.676,104.988)
OP2: (-7.341,103.686,104.352)
C3': (-2.765,102.696,102.475)
C1': (-2.629,100.552,103.455)
C5': (-3.514,103.793,104.657)
O6: (-7.104,96.853,102.027)
O4': (-2.798,101.502,104.493)
C8: (-5.144,100.310,103.598)
C2: (-3.578,96.724,101.686)
C6: (-5.932,97.226,102.118)
C5: (-5.428,98.419,102.676)
C4: (-4.069,98.633,102.676)
P: (-6.113,104.211,105.014)
C4': (-2.567,102.836,103.974)
C2': (-2.200,101.312,102.199)
O2': (-0.793,101.304,102.100)
N1: (-4.912,96.421,101.635)
N2: (-2.752,95.811,101.173)
N3: (-3.093,97.837,102.204)
N7: (-6.093,99.482,103.264)
N9: (-3.894,99.859,103.259)
O5': (-4.884,103.412,104.385)
O3': (-2.024,103.670,101.759)
OP2: (-7.341,103.686,104.352)
C3': (-2.765,102.696,102.475)
C1': (-2.629,100.552,103.455)
C5': (-3.514,103.793,104.657)
O6: (-7.104,96.853,102.027)
O4': (-2.798,101.502,104.493)
C8: (-5.144,100.310,103.598)
C2: (-3.578,96.724,101.686)
C6: (-5.932,97.226,102.118)
C5: (-5.428,98.419,102.676)
C4: (-4.069,98.633,102.676)
P: (-6.113,104.211,105.014)
C4': (-2.567,102.836,103.974)
C2': (-2.200,101.312,102.199)
O2': (-0.793,101.304,102.100)
N1: (-4.912,96.421,101.635)
N2: (-2.752,95.811,101.173)
N3: (-3.093,97.837,102.204)
N7: (-6.093,99.482,103.264)
N9: (-3.894,99.859,103.259)
O5': (-4.884,103.412,104.385)
O3': (-2.024,103.670,101.759)
OP1: (-5.725,92.759,98.174)
OP2: (-5.115,94.837,99.556)
C3': (-0.777,92.914,97.924)
C1': (0.058,94.828,96.835)
C5': (-3.072,93.069,96.830)
O4': (-1.208,94.515,96.283)
C8: (-1.224,96.580,98.166)
O2': (1.307,92.770,96.727)
C6: (1.155,99.016,99.114)
C5: (0.322,97.955,98.671)
C4: (0.931,96.928,97.970)
P: (-5.020,94.060,98.295)
C4': (-1.579,93.166,96.662)
C2': (0.542,93.588,97.594)
C2: (2.910,97.884,98.138)
N1: (2.468,98.945,98.820)
N3: (2.236,96.831,97.671)
N6: (0.721,100.077,99.802)
N7: (-1.041,97.719,98.791)
N9: (-0.077,96.051,97.631)
O5': (-3.482,93.787,98.007)
O3': (-0.631,91.525,98.176)
OP2: (-5.115,94.837,99.556)
C3': (-0.777,92.914,97.924)
C1': (0.058,94.828,96.835)
C5': (-3.072,93.069,96.830)
O4': (-1.208,94.515,96.283)
C8: (-1.224,96.580,98.166)
O2': (1.307,92.770,96.727)
C6: (1.155,99.016,99.114)
C5: (0.322,97.955,98.671)
C4: (0.931,96.928,97.970)
P: (-5.020,94.060,98.295)
C4': (-1.579,93.166,96.662)
C2': (0.542,93.588,97.594)
C2: (2.910,97.884,98.138)
N1: (2.468,98.945,98.820)
N3: (2.236,96.831,97.671)
N6: (0.721,100.077,99.802)
N7: (-1.041,97.719,98.791)
N9: (-0.077,96.051,97.631)
O5': (-3.482,93.787,98.007)
O3': (-0.631,91.525,98.176)
Image (generated by PyMOL):