Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OXM:B61:B39
Extra
PDB:
ATOM 1 O3' U A 60 -3.858 -11.577 9.980 1.00 83.69 O
ATOM 2 P G A 61 -3.976 -12.616 11.196 1.00 81.82 P
ATOM 3 OP1 G A 61 -5.407 -12.979 11.313 1.00 82.03 O
ATOM 4 OP2 G A 61 -3.260 -12.052 12.365 1.00 81.45 O
ATOM 5 O5' G A 61 -3.130 -13.887 10.699 1.00 79.56 O
ATOM 6 C5' G A 61 -3.597 -14.755 9.662 1.00 77.26 C
ATOM 7 C4' G A 61 -2.500 -15.706 9.209 1.00 75.14 C
ATOM 8 O4' G A 61 -1.280 -14.975 8.921 1.00 75.30 O
ATOM 9 C3' G A 61 -2.030 -16.720 10.242 1.00 73.39 C
ATOM 10 O3' G A 61 -2.939 -17.793 10.386 1.00 70.82 O
ATOM 11 C2' G A 61 -0.683 -17.141 9.661 1.00 73.25 C
ATOM 12 O2' G A 61 -0.779 -17.993 8.534 1.00 72.94 O
ATOM 13 C1' G A 61 -0.153 -15.763 9.271 1.00 74.41 C
ATOM 14 N9 G A 61 0.558 -15.146 10.389 1.00 74.99 N
ATOM 15 C8 G A 61 0.042 -14.294 11.339 1.00 75.81 C
ATOM 16 N7 G A 61 0.914 -13.914 12.230 1.00 76.22 N
ATOM 17 C5 G A 61 2.085 -14.558 11.851 1.00 75.63 C
ATOM 18 C6 G A 61 3.375 -14.528 12.439 1.00 75.55 C
ATOM 19 O6 G A 61 3.744 -13.903 13.443 1.00 76.15 O
ATOM 20 N1 G A 61 4.288 -15.321 11.743 1.00 74.98 N
ATOM 21 C2 G A 61 3.990 -16.055 10.615 1.00 74.81 C
ATOM 22 N2 G A 61 4.997 -16.760 10.082 1.00 74.60 N
ATOM 23 N3 G A 61 2.785 -16.092 10.052 1.00 74.76 N
ATOM 24 C4 G A 61 1.883 -15.323 10.719 1.00 75.08 C
ATOM 25 P A A 62 -3.709 -17.950 11.779 1.00 68.58 P
ATOM 26 OP1 A A 62 -4.891 -17.056 11.769 1.00 69.05 O
ATOM 27 OP2 A A 62 -2.721 -17.863 12.879 1.00 68.10 O
ATOM 28 O5' A A 62 -4.205 -19.460 11.692 1.00 66.69 O
TER
ATOM 1 O3' C B 38 6.717 -17.932 14.407 1.00 66.82 O
ATOM 2 P A B 39 7.440 -17.265 13.137 1.00 66.79 P
ATOM 3 OP1 A B 39 8.828 -16.952 13.549 1.00 66.58 O
ATOM 4 OP2 A B 39 6.573 -16.201 12.575 1.00 66.70 O
ATOM 5 O5' A B 39 7.459 -18.474 12.094 1.00 65.48 O
ATOM 6 C5' A B 39 8.412 -19.515 12.245 1.00 64.72 C
ATOM 7 C4' A B 39 8.319 -20.490 11.088 1.00 64.38 C
ATOM 8 O4' A B 39 7.092 -21.251 11.215 1.00 63.84 O
ATOM 9 C3' A B 39 8.228 -19.878 9.694 1.00 64.86 C
ATOM 10 O3' A B 39 9.518 -19.508 9.200 1.00 65.79 O
ATOM 11 C2' A B 39 7.621 -21.039 8.919 1.00 63.84 C
ATOM 12 O2' A B 39 8.567 -22.040 8.594 1.00 63.48 O
ATOM 13 C1' A B 39 6.619 -21.598 9.926 1.00 63.08 C
ATOM 14 N9 A B 39 5.256 -21.094 9.748 1.00 62.20 N
ATOM 15 C8 A B 39 4.694 -19.989 10.327 1.00 62.27 C
ATOM 16 N7 A B 39 3.446 -19.780 9.979 1.00 62.07 N
ATOM 17 C5 A B 39 3.168 -20.820 9.112 1.00 61.34 C
ATOM 18 C6 A B 39 2.009 -21.174 8.394 1.00 61.23 C
ATOM 19 N6 A B 39 0.873 -20.475 8.447 1.00 61.81 N
ATOM 20 N1 A B 39 2.060 -22.275 7.615 1.00 60.87 N
ATOM 21 C2 A B 39 3.202 -22.976 7.559 1.00 60.48 C
ATOM 22 N3 A B 39 4.354 -22.742 8.189 1.00 60.37 N
ATOM 23 C4 A B 39 4.271 -21.640 8.957 1.00 61.22 C
ATOM 24 P A B 40 9.727 -18.268 8.198 1.00 67.04 P
ATOM 25 OP1 A B 40 11.191 -18.067 8.099 1.00 67.13 O
ATOM 26 OP2 A B 40 8.864 -17.131 8.593 1.00 67.35 O
ATOM 27 O5' A B 40 9.159 -18.817 6.809 1.00 67.33 O
TER
ATOM 2 P G A 61 -3.976 -12.616 11.196 1.00 81.82 P
ATOM 3 OP1 G A 61 -5.407 -12.979 11.313 1.00 82.03 O
ATOM 4 OP2 G A 61 -3.260 -12.052 12.365 1.00 81.45 O
ATOM 5 O5' G A 61 -3.130 -13.887 10.699 1.00 79.56 O
ATOM 6 C5' G A 61 -3.597 -14.755 9.662 1.00 77.26 C
ATOM 7 C4' G A 61 -2.500 -15.706 9.209 1.00 75.14 C
ATOM 8 O4' G A 61 -1.280 -14.975 8.921 1.00 75.30 O
ATOM 9 C3' G A 61 -2.030 -16.720 10.242 1.00 73.39 C
ATOM 10 O3' G A 61 -2.939 -17.793 10.386 1.00 70.82 O
ATOM 11 C2' G A 61 -0.683 -17.141 9.661 1.00 73.25 C
ATOM 12 O2' G A 61 -0.779 -17.993 8.534 1.00 72.94 O
ATOM 13 C1' G A 61 -0.153 -15.763 9.271 1.00 74.41 C
ATOM 14 N9 G A 61 0.558 -15.146 10.389 1.00 74.99 N
ATOM 15 C8 G A 61 0.042 -14.294 11.339 1.00 75.81 C
ATOM 16 N7 G A 61 0.914 -13.914 12.230 1.00 76.22 N
ATOM 17 C5 G A 61 2.085 -14.558 11.851 1.00 75.63 C
ATOM 18 C6 G A 61 3.375 -14.528 12.439 1.00 75.55 C
ATOM 19 O6 G A 61 3.744 -13.903 13.443 1.00 76.15 O
ATOM 20 N1 G A 61 4.288 -15.321 11.743 1.00 74.98 N
ATOM 21 C2 G A 61 3.990 -16.055 10.615 1.00 74.81 C
ATOM 22 N2 G A 61 4.997 -16.760 10.082 1.00 74.60 N
ATOM 23 N3 G A 61 2.785 -16.092 10.052 1.00 74.76 N
ATOM 24 C4 G A 61 1.883 -15.323 10.719 1.00 75.08 C
ATOM 25 P A A 62 -3.709 -17.950 11.779 1.00 68.58 P
ATOM 26 OP1 A A 62 -4.891 -17.056 11.769 1.00 69.05 O
ATOM 27 OP2 A A 62 -2.721 -17.863 12.879 1.00 68.10 O
ATOM 28 O5' A A 62 -4.205 -19.460 11.692 1.00 66.69 O
TER
ATOM 1 O3' C B 38 6.717 -17.932 14.407 1.00 66.82 O
ATOM 2 P A B 39 7.440 -17.265 13.137 1.00 66.79 P
ATOM 3 OP1 A B 39 8.828 -16.952 13.549 1.00 66.58 O
ATOM 4 OP2 A B 39 6.573 -16.201 12.575 1.00 66.70 O
ATOM 5 O5' A B 39 7.459 -18.474 12.094 1.00 65.48 O
ATOM 6 C5' A B 39 8.412 -19.515 12.245 1.00 64.72 C
ATOM 7 C4' A B 39 8.319 -20.490 11.088 1.00 64.38 C
ATOM 8 O4' A B 39 7.092 -21.251 11.215 1.00 63.84 O
ATOM 9 C3' A B 39 8.228 -19.878 9.694 1.00 64.86 C
ATOM 10 O3' A B 39 9.518 -19.508 9.200 1.00 65.79 O
ATOM 11 C2' A B 39 7.621 -21.039 8.919 1.00 63.84 C
ATOM 12 O2' A B 39 8.567 -22.040 8.594 1.00 63.48 O
ATOM 13 C1' A B 39 6.619 -21.598 9.926 1.00 63.08 C
ATOM 14 N9 A B 39 5.256 -21.094 9.748 1.00 62.20 N
ATOM 15 C8 A B 39 4.694 -19.989 10.327 1.00 62.27 C
ATOM 16 N7 A B 39 3.446 -19.780 9.979 1.00 62.07 N
ATOM 17 C5 A B 39 3.168 -20.820 9.112 1.00 61.34 C
ATOM 18 C6 A B 39 2.009 -21.174 8.394 1.00 61.23 C
ATOM 19 N6 A B 39 0.873 -20.475 8.447 1.00 61.81 N
ATOM 20 N1 A B 39 2.060 -22.275 7.615 1.00 60.87 N
ATOM 21 C2 A B 39 3.202 -22.976 7.559 1.00 60.48 C
ATOM 22 N3 A B 39 4.354 -22.742 8.189 1.00 60.37 N
ATOM 23 C4 A B 39 4.271 -21.640 8.957 1.00 61.22 C
ATOM 24 P A B 40 9.727 -18.268 8.198 1.00 67.04 P
ATOM 25 OP1 A B 40 11.191 -18.067 8.099 1.00 67.13 O
ATOM 26 OP2 A B 40 8.864 -17.131 8.593 1.00 67.35 O
ATOM 27 O5' A B 40 9.159 -18.817 6.809 1.00 67.33 O
TER
Atoms:
OP1: (-5.407,-12.979,11.313)
OP2: (-3.260,-12.052,12.365)
C3': (-2.030,-16.720,10.242)
C1': (-0.153,-15.763,9.271)
C5': (-3.597,-14.755,9.662)
O6: (3.744,-13.903,13.443)
O4': (-1.280,-14.975,8.921)
C8: (0.042,-14.294,11.339)
C2: (3.990,-16.055,10.615)
C6: (3.375,-14.528,12.439)
C5: (2.085,-14.558,11.851)
C4: (1.883,-15.323,10.719)
P: (-3.976,-12.616,11.196)
C4': (-2.500,-15.706,9.209)
C2': (-0.683,-17.141,9.661)
O2': (-0.779,-17.993,8.534)
N1: (4.288,-15.321,11.743)
N2: (4.997,-16.760,10.082)
N3: (2.785,-16.092,10.052)
N7: (0.914,-13.914,12.230)
N9: (0.558,-15.146,10.389)
O5': (-3.130,-13.887,10.699)
O3': (-2.939,-17.793,10.386)
OP2: (-3.260,-12.052,12.365)
C3': (-2.030,-16.720,10.242)
C1': (-0.153,-15.763,9.271)
C5': (-3.597,-14.755,9.662)
O6: (3.744,-13.903,13.443)
O4': (-1.280,-14.975,8.921)
C8: (0.042,-14.294,11.339)
C2: (3.990,-16.055,10.615)
C6: (3.375,-14.528,12.439)
C5: (2.085,-14.558,11.851)
C4: (1.883,-15.323,10.719)
P: (-3.976,-12.616,11.196)
C4': (-2.500,-15.706,9.209)
C2': (-0.683,-17.141,9.661)
O2': (-0.779,-17.993,8.534)
N1: (4.288,-15.321,11.743)
N2: (4.997,-16.760,10.082)
N3: (2.785,-16.092,10.052)
N7: (0.914,-13.914,12.230)
N9: (0.558,-15.146,10.389)
O5': (-3.130,-13.887,10.699)
O3': (-2.939,-17.793,10.386)
OP1: (8.828,-16.952,13.549)
OP2: (6.573,-16.201,12.575)
C3': (8.228,-19.878,9.694)
C1': (6.619,-21.598,9.926)
C5': (8.412,-19.515,12.245)
O4': (7.092,-21.251,11.215)
C8: (4.694,-19.989,10.327)
O2': (8.567,-22.040,8.594)
C6: (2.009,-21.174,8.394)
C5: (3.168,-20.820,9.112)
C4: (4.271,-21.640,8.957)
P: (7.440,-17.265,13.137)
C4': (8.319,-20.490,11.088)
C2': (7.621,-21.039,8.919)
C2: (3.202,-22.976,7.559)
N1: (2.060,-22.275,7.615)
N3: (4.354,-22.742,8.189)
N6: (0.873,-20.475,8.447)
N7: (3.446,-19.780,9.979)
N9: (5.256,-21.094,9.748)
O5': (7.459,-18.474,12.094)
O3': (9.518,-19.508,9.200)
OP2: (6.573,-16.201,12.575)
C3': (8.228,-19.878,9.694)
C1': (6.619,-21.598,9.926)
C5': (8.412,-19.515,12.245)
O4': (7.092,-21.251,11.215)
C8: (4.694,-19.989,10.327)
O2': (8.567,-22.040,8.594)
C6: (2.009,-21.174,8.394)
C5: (3.168,-20.820,9.112)
C4: (4.271,-21.640,8.957)
P: (7.440,-17.265,13.137)
C4': (8.319,-20.490,11.088)
C2': (7.621,-21.039,8.919)
C2: (3.202,-22.976,7.559)
N1: (2.060,-22.275,7.615)
N3: (4.354,-22.742,8.189)
N6: (0.873,-20.475,8.447)
N7: (3.446,-19.780,9.979)
N9: (5.256,-21.094,9.748)
O5': (7.459,-18.474,12.094)
O3': (9.518,-19.508,9.200)
Image (generated by PyMOL):