Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OXD:B60:B38
Extra
PDB:
ATOM 1 O3' U A 59 -4.461 -12.401 8.792 1.00 93.36 O
ATOM 2 P G A 60 -4.717 -13.366 10.045 1.00 91.53 P
ATOM 3 OP1 G A 60 -6.175 -13.619 10.093 1.00 91.89 O
ATOM 4 OP2 G A 60 -4.032 -12.797 11.228 1.00 91.41 O
ATOM 5 O5' G A 60 -3.941 -14.712 9.653 1.00 89.43 O
ATOM 6 C5' G A 60 -4.385 -15.517 8.562 1.00 87.40 C
ATOM 7 C4' G A 60 -3.282 -16.439 8.073 1.00 85.59 C
ATOM 8 O4' G A 60 -2.056 -15.699 7.823 1.00 85.51 O
ATOM 9 C3' G A 60 -2.795 -17.486 9.066 1.00 84.29 C
ATOM 10 O3' G A 60 -3.729 -18.531 9.297 1.00 82.54 O
ATOM 11 C2' G A 60 -1.513 -17.922 8.364 1.00 83.86 C
ATOM 12 O2' G A 60 -1.739 -18.602 7.144 1.00 83.79 O
ATOM 13 C1' G A 60 -0.937 -16.528 8.114 1.00 84.34 C
ATOM 14 N9 G A 60 -0.223 -16.040 9.295 1.00 83.69 N
ATOM 15 C8 G A 60 -0.727 -15.246 10.298 1.00 83.98 C
ATOM 16 N7 G A 60 0.132 -14.980 11.239 1.00 83.94 N
ATOM 17 C5 G A 60 1.286 -15.645 10.846 1.00 83.27 C
ATOM 18 C6 G A 60 2.557 -15.720 11.475 1.00 82.91 C
ATOM 19 O6 G A 60 2.921 -15.195 12.536 1.00 83.06 O
ATOM 20 N1 G A 60 3.461 -16.493 10.748 1.00 82.41 N
ATOM 21 C2 G A 60 3.167 -17.117 9.558 1.00 82.39 C
ATOM 22 N2 G A 60 4.164 -17.819 9.006 1.00 82.04 N
ATOM 23 N3 G A 60 1.979 -17.057 8.955 1.00 82.64 N
ATOM 24 C4 G A 60 1.084 -16.305 9.650 1.00 83.16 C
ATOM 25 P A A 61 -4.296 -18.730 10.785 1.00 80.90 P
ATOM 26 OP1 A A 61 -5.488 -17.859 10.924 1.00 81.12 O
ATOM 27 OP2 A A 61 -3.174 -18.619 11.750 1.00 80.31 O
ATOM 28 O5' A A 61 -4.758 -20.258 10.762 1.00 78.29 O
TER
ATOM 1 O3' C B 37 5.975 -18.554 13.726 1.00 79.11 O
ATOM 2 P A B 38 6.724 -17.875 12.478 1.00 79.08 P
ATOM 3 OP1 A B 38 8.073 -17.487 12.945 1.00 79.28 O
ATOM 4 OP2 A B 38 5.848 -16.866 11.835 1.00 79.21 O
ATOM 5 O5' A B 38 6.858 -19.108 11.470 1.00 77.94 O
ATOM 6 C5' A B 38 7.664 -20.229 11.822 1.00 77.02 C
ATOM 7 C4' A B 38 7.688 -21.254 10.703 1.00 76.34 C
ATOM 8 O4' A B 38 6.519 -22.109 10.792 1.00 75.74 O
ATOM 9 C3' A B 38 7.637 -20.689 9.289 1.00 76.46 C
ATOM 10 O3' A B 38 8.941 -20.278 8.867 1.00 77.00 O
ATOM 11 C2' A B 38 7.109 -21.894 8.518 1.00 75.44 C
ATOM 12 O2' A B 38 8.106 -22.869 8.268 1.00 74.69 O
ATOM 13 C1' A B 38 6.079 -22.462 9.491 1.00 74.85 C
ATOM 14 N9 A B 38 4.709 -21.981 9.280 1.00 74.23 N
ATOM 15 C8 A B 38 4.091 -20.945 9.925 1.00 74.64 C
ATOM 16 N7 A B 38 2.853 -20.733 9.543 1.00 74.57 N
ATOM 17 C5 A B 38 2.637 -21.699 8.575 1.00 73.77 C
ATOM 18 C6 A B 38 1.517 -22.011 7.774 1.00 73.38 C
ATOM 19 N6 A B 38 0.360 -21.345 7.830 1.00 73.51 N
ATOM 20 N1 A B 38 1.627 -23.039 6.906 1.00 72.99 N
ATOM 21 C2 A B 38 2.786 -23.710 6.847 1.00 72.55 C
ATOM 22 N3 A B 38 3.904 -23.506 7.546 1.00 72.64 N
ATOM 23 C4 A B 38 3.769 -22.478 8.402 1.00 73.44 C
ATOM 24 P A B 39 9.151 -19.029 7.881 1.00 77.99 P
ATOM 25 OP1 A B 39 10.607 -18.791 7.797 1.00 78.66 O
ATOM 26 OP2 A B 39 8.275 -17.906 8.277 1.00 78.22 O
ATOM 27 O5' A B 39 8.618 -19.591 6.481 1.00 78.41 O
TER
ATOM 2 P G A 60 -4.717 -13.366 10.045 1.00 91.53 P
ATOM 3 OP1 G A 60 -6.175 -13.619 10.093 1.00 91.89 O
ATOM 4 OP2 G A 60 -4.032 -12.797 11.228 1.00 91.41 O
ATOM 5 O5' G A 60 -3.941 -14.712 9.653 1.00 89.43 O
ATOM 6 C5' G A 60 -4.385 -15.517 8.562 1.00 87.40 C
ATOM 7 C4' G A 60 -3.282 -16.439 8.073 1.00 85.59 C
ATOM 8 O4' G A 60 -2.056 -15.699 7.823 1.00 85.51 O
ATOM 9 C3' G A 60 -2.795 -17.486 9.066 1.00 84.29 C
ATOM 10 O3' G A 60 -3.729 -18.531 9.297 1.00 82.54 O
ATOM 11 C2' G A 60 -1.513 -17.922 8.364 1.00 83.86 C
ATOM 12 O2' G A 60 -1.739 -18.602 7.144 1.00 83.79 O
ATOM 13 C1' G A 60 -0.937 -16.528 8.114 1.00 84.34 C
ATOM 14 N9 G A 60 -0.223 -16.040 9.295 1.00 83.69 N
ATOM 15 C8 G A 60 -0.727 -15.246 10.298 1.00 83.98 C
ATOM 16 N7 G A 60 0.132 -14.980 11.239 1.00 83.94 N
ATOM 17 C5 G A 60 1.286 -15.645 10.846 1.00 83.27 C
ATOM 18 C6 G A 60 2.557 -15.720 11.475 1.00 82.91 C
ATOM 19 O6 G A 60 2.921 -15.195 12.536 1.00 83.06 O
ATOM 20 N1 G A 60 3.461 -16.493 10.748 1.00 82.41 N
ATOM 21 C2 G A 60 3.167 -17.117 9.558 1.00 82.39 C
ATOM 22 N2 G A 60 4.164 -17.819 9.006 1.00 82.04 N
ATOM 23 N3 G A 60 1.979 -17.057 8.955 1.00 82.64 N
ATOM 24 C4 G A 60 1.084 -16.305 9.650 1.00 83.16 C
ATOM 25 P A A 61 -4.296 -18.730 10.785 1.00 80.90 P
ATOM 26 OP1 A A 61 -5.488 -17.859 10.924 1.00 81.12 O
ATOM 27 OP2 A A 61 -3.174 -18.619 11.750 1.00 80.31 O
ATOM 28 O5' A A 61 -4.758 -20.258 10.762 1.00 78.29 O
TER
ATOM 1 O3' C B 37 5.975 -18.554 13.726 1.00 79.11 O
ATOM 2 P A B 38 6.724 -17.875 12.478 1.00 79.08 P
ATOM 3 OP1 A B 38 8.073 -17.487 12.945 1.00 79.28 O
ATOM 4 OP2 A B 38 5.848 -16.866 11.835 1.00 79.21 O
ATOM 5 O5' A B 38 6.858 -19.108 11.470 1.00 77.94 O
ATOM 6 C5' A B 38 7.664 -20.229 11.822 1.00 77.02 C
ATOM 7 C4' A B 38 7.688 -21.254 10.703 1.00 76.34 C
ATOM 8 O4' A B 38 6.519 -22.109 10.792 1.00 75.74 O
ATOM 9 C3' A B 38 7.637 -20.689 9.289 1.00 76.46 C
ATOM 10 O3' A B 38 8.941 -20.278 8.867 1.00 77.00 O
ATOM 11 C2' A B 38 7.109 -21.894 8.518 1.00 75.44 C
ATOM 12 O2' A B 38 8.106 -22.869 8.268 1.00 74.69 O
ATOM 13 C1' A B 38 6.079 -22.462 9.491 1.00 74.85 C
ATOM 14 N9 A B 38 4.709 -21.981 9.280 1.00 74.23 N
ATOM 15 C8 A B 38 4.091 -20.945 9.925 1.00 74.64 C
ATOM 16 N7 A B 38 2.853 -20.733 9.543 1.00 74.57 N
ATOM 17 C5 A B 38 2.637 -21.699 8.575 1.00 73.77 C
ATOM 18 C6 A B 38 1.517 -22.011 7.774 1.00 73.38 C
ATOM 19 N6 A B 38 0.360 -21.345 7.830 1.00 73.51 N
ATOM 20 N1 A B 38 1.627 -23.039 6.906 1.00 72.99 N
ATOM 21 C2 A B 38 2.786 -23.710 6.847 1.00 72.55 C
ATOM 22 N3 A B 38 3.904 -23.506 7.546 1.00 72.64 N
ATOM 23 C4 A B 38 3.769 -22.478 8.402 1.00 73.44 C
ATOM 24 P A B 39 9.151 -19.029 7.881 1.00 77.99 P
ATOM 25 OP1 A B 39 10.607 -18.791 7.797 1.00 78.66 O
ATOM 26 OP2 A B 39 8.275 -17.906 8.277 1.00 78.22 O
ATOM 27 O5' A B 39 8.618 -19.591 6.481 1.00 78.41 O
TER
Atoms:
OP1: (-6.175,-13.619,10.093)
OP2: (-4.032,-12.797,11.228)
C3': (-2.795,-17.486,9.066)
C1': (-0.937,-16.528,8.114)
C5': (-4.385,-15.517,8.562)
O6: (2.921,-15.195,12.536)
O4': (-2.056,-15.699,7.823)
C8: (-0.727,-15.246,10.298)
C2: (3.167,-17.117,9.558)
C6: (2.557,-15.720,11.475)
C5: (1.286,-15.645,10.846)
C4: (1.084,-16.305,9.650)
P: (-4.717,-13.366,10.045)
C4': (-3.282,-16.439,8.073)
C2': (-1.513,-17.922,8.364)
O2': (-1.739,-18.602,7.144)
N1: (3.461,-16.493,10.748)
N2: (4.164,-17.819,9.006)
N3: (1.979,-17.057,8.955)
N7: (0.132,-14.980,11.239)
N9: (-0.223,-16.040,9.295)
O5': (-3.941,-14.712,9.653)
O3': (-3.729,-18.531,9.297)
OP2: (-4.032,-12.797,11.228)
C3': (-2.795,-17.486,9.066)
C1': (-0.937,-16.528,8.114)
C5': (-4.385,-15.517,8.562)
O6: (2.921,-15.195,12.536)
O4': (-2.056,-15.699,7.823)
C8: (-0.727,-15.246,10.298)
C2: (3.167,-17.117,9.558)
C6: (2.557,-15.720,11.475)
C5: (1.286,-15.645,10.846)
C4: (1.084,-16.305,9.650)
P: (-4.717,-13.366,10.045)
C4': (-3.282,-16.439,8.073)
C2': (-1.513,-17.922,8.364)
O2': (-1.739,-18.602,7.144)
N1: (3.461,-16.493,10.748)
N2: (4.164,-17.819,9.006)
N3: (1.979,-17.057,8.955)
N7: (0.132,-14.980,11.239)
N9: (-0.223,-16.040,9.295)
O5': (-3.941,-14.712,9.653)
O3': (-3.729,-18.531,9.297)
OP1: (8.073,-17.487,12.945)
OP2: (5.848,-16.866,11.835)
C3': (7.637,-20.689,9.289)
C1': (6.079,-22.462,9.491)
C5': (7.664,-20.229,11.822)
O4': (6.519,-22.109,10.792)
C8: (4.091,-20.945,9.925)
O2': (8.106,-22.869,8.268)
C6: (1.517,-22.011,7.774)
C5: (2.637,-21.699,8.575)
C4: (3.769,-22.478,8.402)
P: (6.724,-17.875,12.478)
C4': (7.688,-21.254,10.703)
C2': (7.109,-21.894,8.518)
C2: (2.786,-23.710,6.847)
N1: (1.627,-23.039,6.906)
N3: (3.904,-23.506,7.546)
N6: (0.360,-21.345,7.830)
N7: (2.853,-20.733,9.543)
N9: (4.709,-21.981,9.280)
O5': (6.858,-19.108,11.470)
O3': (8.941,-20.278,8.867)
OP2: (5.848,-16.866,11.835)
C3': (7.637,-20.689,9.289)
C1': (6.079,-22.462,9.491)
C5': (7.664,-20.229,11.822)
O4': (6.519,-22.109,10.792)
C8: (4.091,-20.945,9.925)
O2': (8.106,-22.869,8.268)
C6: (1.517,-22.011,7.774)
C5: (2.637,-21.699,8.575)
C4: (3.769,-22.478,8.402)
P: (6.724,-17.875,12.478)
C4': (7.688,-21.254,10.703)
C2': (7.109,-21.894,8.518)
C2: (2.786,-23.710,6.847)
N1: (1.627,-23.039,6.906)
N3: (3.904,-23.506,7.546)
N6: (0.360,-21.345,7.830)
N7: (2.853,-20.733,9.543)
N9: (4.709,-21.981,9.280)
O5': (6.858,-19.108,11.470)
O3': (8.941,-20.278,8.867)
Image (generated by PyMOL):