Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0580:0553
Extra
PDB:
ATOM 1 O3' A A 579 -6.184 103.616 106.240 1.00 58.99 O
ATOM 2 P G A 580 -6.181 104.078 104.700 1.00 59.27 P
ATOM 3 OP1 G A 580 -5.892 105.537 104.703 1.00 57.75 O
ATOM 4 OP2 G A 580 -7.408 103.567 104.028 1.00 59.51 O
ATOM 5 O5' G A 580 -4.951 103.296 104.058 1.00 59.26 O
ATOM 6 C5' G A 580 -3.592 103.584 104.447 1.00 55.65 C
ATOM 7 C4' G A 580 -2.656 102.597 103.798 1.00 54.11 C
ATOM 8 O4' G A 580 -2.959 101.263 104.283 1.00 53.35 O
ATOM 9 C3' G A 580 -2.787 102.481 102.288 1.00 53.08 C
ATOM 10 O3' G A 580 -2.001 103.453 101.628 1.00 53.58 O
ATOM 11 C2' G A 580 -2.233 101.090 102.024 1.00 53.83 C
ATOM 12 O2' G A 580 -0.821 101.059 102.009 1.00 56.90 O
ATOM 13 C1' G A 580 -2.753 100.322 103.242 1.00 53.50 C
ATOM 14 N9 G A 580 -4.021 99.658 102.962 1.00 53.12 N
ATOM 15 C8 G A 580 -5.284 100.139 103.212 1.00 53.96 C
ATOM 16 N7 G A 580 -6.226 99.333 102.808 1.00 55.52 N
ATOM 17 C5 G A 580 -5.544 98.251 102.269 1.00 53.82 C
ATOM 18 C6 G A 580 -6.034 97.067 101.671 1.00 54.41 C
ATOM 19 O6 G A 580 -7.208 96.725 101.489 1.00 56.98 O
ATOM 20 N1 G A 580 -4.998 96.235 101.260 1.00 54.91 N
ATOM 21 C2 G A 580 -3.661 96.512 101.405 1.00 54.23 C
ATOM 22 N2 G A 580 -2.812 95.588 100.939 1.00 53.07 N
ATOM 23 N3 G A 580 -3.191 97.615 101.963 1.00 53.13 N
ATOM 24 C4 G A 580 -4.182 98.433 102.368 1.00 52.83 C
ATOM 25 P A A 581 -2.674 104.810 101.100 1.00 55.99 P
ATOM 26 OP1 A A 581 -2.600 105.794 102.219 1.00 53.87 O
ATOM 27 OP2 A A 581 -3.985 104.502 100.480 1.00 54.87 O
ATOM 28 O5' A A 581 -1.684 105.285 99.943 1.00 56.33 O
TER
ATOM 1 O3' G B 552 -5.722 94.699 96.748 1.00 51.06 O
ATOM 2 P A B 553 -5.200 93.784 97.968 1.00 52.97 P
ATOM 3 OP1 A B 553 -5.738 92.412 97.772 1.00 49.89 O
ATOM 4 OP2 A B 553 -5.399 94.479 99.273 1.00 49.07 O
ATOM 5 O5' A B 553 -3.639 93.675 97.679 1.00 52.35 O
ATOM 6 C5' A B 553 -3.174 93.023 96.482 1.00 51.78 C
ATOM 7 C4' A B 553 -1.676 93.120 96.368 1.00 50.34 C
ATOM 8 O4' A B 553 -1.275 94.469 96.020 1.00 48.74 O
ATOM 9 C3' A B 553 -0.894 92.834 97.634 1.00 49.12 C
ATOM 10 O3' A B 553 -0.785 91.445 97.880 1.00 47.47 O
ATOM 11 C2' A B 553 0.448 93.461 97.305 1.00 48.07 C
ATOM 12 O2' A B 553 1.159 92.623 96.412 1.00 46.88 O
ATOM 13 C1' A B 553 0.006 94.729 96.569 1.00 47.13 C
ATOM 14 N9 A B 553 -0.084 95.939 97.390 1.00 46.67 N
ATOM 15 C8 A B 553 -1.208 96.478 97.965 1.00 47.44 C
ATOM 16 N7 A B 553 -0.994 97.616 98.584 1.00 47.62 N
ATOM 17 C5 A B 553 0.366 97.837 98.419 1.00 46.48 C
ATOM 18 C6 A B 553 1.217 98.887 98.833 1.00 46.77 C
ATOM 19 N6 A B 553 0.803 99.957 99.516 1.00 46.54 N
ATOM 20 N1 A B 553 2.523 98.799 98.512 1.00 45.12 N
ATOM 21 C2 A B 553 2.941 97.729 97.823 1.00 46.61 C
ATOM 22 N3 A B 553 2.245 96.686 97.373 1.00 46.84 N
ATOM 23 C4 A B 553 0.946 96.801 97.706 1.00 47.49 C
ATOM 24 P A B 554 -0.899 90.901 99.386 1.00 48.23 P
ATOM 25 OP1 A B 554 -1.059 89.421 99.299 1.00 46.18 O
ATOM 26 OP2 A B 554 -1.908 91.717 100.113 1.00 47.89 O
ATOM 27 O5' A B 554 0.514 91.234 100.043 1.00 48.59 O
TER
ATOM 2 P G A 580 -6.181 104.078 104.700 1.00 59.27 P
ATOM 3 OP1 G A 580 -5.892 105.537 104.703 1.00 57.75 O
ATOM 4 OP2 G A 580 -7.408 103.567 104.028 1.00 59.51 O
ATOM 5 O5' G A 580 -4.951 103.296 104.058 1.00 59.26 O
ATOM 6 C5' G A 580 -3.592 103.584 104.447 1.00 55.65 C
ATOM 7 C4' G A 580 -2.656 102.597 103.798 1.00 54.11 C
ATOM 8 O4' G A 580 -2.959 101.263 104.283 1.00 53.35 O
ATOM 9 C3' G A 580 -2.787 102.481 102.288 1.00 53.08 C
ATOM 10 O3' G A 580 -2.001 103.453 101.628 1.00 53.58 O
ATOM 11 C2' G A 580 -2.233 101.090 102.024 1.00 53.83 C
ATOM 12 O2' G A 580 -0.821 101.059 102.009 1.00 56.90 O
ATOM 13 C1' G A 580 -2.753 100.322 103.242 1.00 53.50 C
ATOM 14 N9 G A 580 -4.021 99.658 102.962 1.00 53.12 N
ATOM 15 C8 G A 580 -5.284 100.139 103.212 1.00 53.96 C
ATOM 16 N7 G A 580 -6.226 99.333 102.808 1.00 55.52 N
ATOM 17 C5 G A 580 -5.544 98.251 102.269 1.00 53.82 C
ATOM 18 C6 G A 580 -6.034 97.067 101.671 1.00 54.41 C
ATOM 19 O6 G A 580 -7.208 96.725 101.489 1.00 56.98 O
ATOM 20 N1 G A 580 -4.998 96.235 101.260 1.00 54.91 N
ATOM 21 C2 G A 580 -3.661 96.512 101.405 1.00 54.23 C
ATOM 22 N2 G A 580 -2.812 95.588 100.939 1.00 53.07 N
ATOM 23 N3 G A 580 -3.191 97.615 101.963 1.00 53.13 N
ATOM 24 C4 G A 580 -4.182 98.433 102.368 1.00 52.83 C
ATOM 25 P A A 581 -2.674 104.810 101.100 1.00 55.99 P
ATOM 26 OP1 A A 581 -2.600 105.794 102.219 1.00 53.87 O
ATOM 27 OP2 A A 581 -3.985 104.502 100.480 1.00 54.87 O
ATOM 28 O5' A A 581 -1.684 105.285 99.943 1.00 56.33 O
TER
ATOM 1 O3' G B 552 -5.722 94.699 96.748 1.00 51.06 O
ATOM 2 P A B 553 -5.200 93.784 97.968 1.00 52.97 P
ATOM 3 OP1 A B 553 -5.738 92.412 97.772 1.00 49.89 O
ATOM 4 OP2 A B 553 -5.399 94.479 99.273 1.00 49.07 O
ATOM 5 O5' A B 553 -3.639 93.675 97.679 1.00 52.35 O
ATOM 6 C5' A B 553 -3.174 93.023 96.482 1.00 51.78 C
ATOM 7 C4' A B 553 -1.676 93.120 96.368 1.00 50.34 C
ATOM 8 O4' A B 553 -1.275 94.469 96.020 1.00 48.74 O
ATOM 9 C3' A B 553 -0.894 92.834 97.634 1.00 49.12 C
ATOM 10 O3' A B 553 -0.785 91.445 97.880 1.00 47.47 O
ATOM 11 C2' A B 553 0.448 93.461 97.305 1.00 48.07 C
ATOM 12 O2' A B 553 1.159 92.623 96.412 1.00 46.88 O
ATOM 13 C1' A B 553 0.006 94.729 96.569 1.00 47.13 C
ATOM 14 N9 A B 553 -0.084 95.939 97.390 1.00 46.67 N
ATOM 15 C8 A B 553 -1.208 96.478 97.965 1.00 47.44 C
ATOM 16 N7 A B 553 -0.994 97.616 98.584 1.00 47.62 N
ATOM 17 C5 A B 553 0.366 97.837 98.419 1.00 46.48 C
ATOM 18 C6 A B 553 1.217 98.887 98.833 1.00 46.77 C
ATOM 19 N6 A B 553 0.803 99.957 99.516 1.00 46.54 N
ATOM 20 N1 A B 553 2.523 98.799 98.512 1.00 45.12 N
ATOM 21 C2 A B 553 2.941 97.729 97.823 1.00 46.61 C
ATOM 22 N3 A B 553 2.245 96.686 97.373 1.00 46.84 N
ATOM 23 C4 A B 553 0.946 96.801 97.706 1.00 47.49 C
ATOM 24 P A B 554 -0.899 90.901 99.386 1.00 48.23 P
ATOM 25 OP1 A B 554 -1.059 89.421 99.299 1.00 46.18 O
ATOM 26 OP2 A B 554 -1.908 91.717 100.113 1.00 47.89 O
ATOM 27 O5' A B 554 0.514 91.234 100.043 1.00 48.59 O
TER
Atoms:
OP1: (-5.892,105.537,104.703)
OP2: (-7.408,103.567,104.028)
C3': (-2.787,102.481,102.288)
C1': (-2.753,100.322,103.242)
C5': (-3.592,103.584,104.447)
O6: (-7.208,96.725,101.489)
O4': (-2.959,101.263,104.283)
C8: (-5.284,100.139,103.212)
C2: (-3.661,96.512,101.405)
C6: (-6.034,97.067,101.671)
C5: (-5.544,98.251,102.269)
C4: (-4.182,98.433,102.368)
P: (-6.181,104.078,104.700)
C4': (-2.656,102.597,103.798)
C2': (-2.233,101.090,102.024)
O2': (-0.821,101.059,102.009)
N1: (-4.998,96.235,101.260)
N2: (-2.812,95.588,100.939)
N3: (-3.191,97.615,101.963)
N7: (-6.226,99.333,102.808)
N9: (-4.021,99.658,102.962)
O5': (-4.951,103.296,104.058)
O3': (-2.001,103.453,101.628)
OP2: (-7.408,103.567,104.028)
C3': (-2.787,102.481,102.288)
C1': (-2.753,100.322,103.242)
C5': (-3.592,103.584,104.447)
O6: (-7.208,96.725,101.489)
O4': (-2.959,101.263,104.283)
C8: (-5.284,100.139,103.212)
C2: (-3.661,96.512,101.405)
C6: (-6.034,97.067,101.671)
C5: (-5.544,98.251,102.269)
C4: (-4.182,98.433,102.368)
P: (-6.181,104.078,104.700)
C4': (-2.656,102.597,103.798)
C2': (-2.233,101.090,102.024)
O2': (-0.821,101.059,102.009)
N1: (-4.998,96.235,101.260)
N2: (-2.812,95.588,100.939)
N3: (-3.191,97.615,101.963)
N7: (-6.226,99.333,102.808)
N9: (-4.021,99.658,102.962)
O5': (-4.951,103.296,104.058)
O3': (-2.001,103.453,101.628)
OP1: (-5.738,92.412,97.772)
OP2: (-5.399,94.479,99.273)
C3': (-0.894,92.834,97.634)
C1': (0.006,94.729,96.569)
C5': (-3.174,93.023,96.482)
O4': (-1.275,94.469,96.020)
C8: (-1.208,96.478,97.965)
O2': (1.159,92.623,96.412)
C6: (1.217,98.887,98.833)
C5: (0.366,97.837,98.419)
C4: (0.946,96.801,97.706)
P: (-5.200,93.784,97.968)
C4': (-1.676,93.120,96.368)
C2': (0.448,93.461,97.305)
C2: (2.941,97.729,97.823)
N1: (2.523,98.799,98.512)
N3: (2.245,96.686,97.373)
N6: (0.803,99.957,99.516)
N7: (-0.994,97.616,98.584)
N9: (-0.084,95.939,97.390)
O5': (-3.639,93.675,97.679)
O3': (-0.785,91.445,97.880)
OP2: (-5.399,94.479,99.273)
C3': (-0.894,92.834,97.634)
C1': (0.006,94.729,96.569)
C5': (-3.174,93.023,96.482)
O4': (-1.275,94.469,96.020)
C8: (-1.208,96.478,97.965)
O2': (1.159,92.623,96.412)
C6: (1.217,98.887,98.833)
C5: (0.366,97.837,98.419)
C4: (0.946,96.801,97.706)
P: (-5.200,93.784,97.968)
C4': (-1.676,93.120,96.368)
C2': (0.448,93.461,97.305)
C2: (2.941,97.729,97.823)
N1: (2.523,98.799,98.512)
N3: (2.245,96.686,97.373)
N6: (0.803,99.957,99.516)
N7: (-0.994,97.616,98.584)
N9: (-0.084,95.939,97.390)
O5': (-3.639,93.675,97.679)
O3': (-0.785,91.445,97.880)
Image (generated by PyMOL):