Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A580:A553
Extra
PDB:
ATOM 1 O3' A A 579 -6.079 103.663 106.674 1.00 62.83 O
ATOM 2 P G A 580 -5.994 104.169 105.152 1.00 62.44 P
ATOM 3 OP1 G A 580 -5.637 105.614 105.133 1.00 61.56 O
ATOM 4 OP2 G A 580 -7.219 103.707 104.459 1.00 61.89 O
ATOM 5 O5' G A 580 -4.799 103.326 104.527 1.00 63.27 O
ATOM 6 C5' G A 580 -3.436 103.519 104.936 1.00 60.68 C
ATOM 7 C4' G A 580 -2.566 102.502 104.252 1.00 59.33 C
ATOM 8 O4' G A 580 -2.987 101.168 104.648 1.00 59.36 O
ATOM 9 C3' G A 580 -2.698 102.473 102.740 1.00 58.64 C
ATOM 10 O3' G A 580 -1.853 103.433 102.136 1.00 56.62 O
ATOM 11 C2' G A 580 -2.202 101.074 102.409 1.00 58.98 C
ATOM 12 O2' G A 580 -0.793 101.002 102.451 1.00 62.01 O
ATOM 13 C1' G A 580 -2.769 100.265 103.575 1.00 59.14 C
ATOM 14 N9 G A 580 -4.024 99.595 103.242 1.00 59.88 N
ATOM 15 C8 G A 580 -5.301 100.076 103.428 1.00 60.93 C
ATOM 16 N7 G A 580 -6.230 99.246 103.023 1.00 61.32 N
ATOM 17 C5 G A 580 -5.527 98.150 102.543 1.00 59.79 C
ATOM 18 C6 G A 580 -5.991 96.940 101.982 1.00 59.77 C
ATOM 19 O6 G A 580 -7.159 96.559 101.817 1.00 61.09 O
ATOM 20 N1 G A 580 -4.935 96.119 101.601 1.00 59.42 N
ATOM 21 C2 G A 580 -3.606 96.410 101.756 1.00 59.37 C
ATOM 22 N2 G A 580 -2.746 95.491 101.301 1.00 58.91 N
ATOM 23 N3 G A 580 -3.156 97.521 102.306 1.00 59.44 N
ATOM 24 C4 G A 580 -4.163 98.347 102.667 1.00 59.68 C
ATOM 25 P A A 581 -2.465 104.787 101.540 1.00 57.05 P
ATOM 26 OP1 A A 581 -2.359 105.823 102.597 1.00 54.42 O
ATOM 27 OP2 A A 581 -3.771 104.538 100.891 1.00 56.88 O
ATOM 28 O5' A A 581 -1.450 105.158 100.375 1.00 56.79 O
TER
ATOM 1 O3' G B 552 -5.415 94.838 97.081 1.00 56.22 O
ATOM 2 P A B 553 -4.949 93.868 98.270 1.00 53.31 P
ATOM 3 OP1 A B 553 -5.559 92.563 97.975 1.00 52.00 O
ATOM 4 OP2 A B 553 -5.115 94.476 99.610 1.00 53.66 O
ATOM 5 O5' A B 553 -3.406 93.700 97.970 1.00 52.71 O
ATOM 6 C5' A B 553 -2.975 92.910 96.856 1.00 53.47 C
ATOM 7 C4' A B 553 -1.480 92.986 96.729 1.00 53.72 C
ATOM 8 O4' A B 553 -1.086 94.321 96.324 1.00 53.56 O
ATOM 9 C3' A B 553 -0.713 92.754 98.022 1.00 52.49 C
ATOM 10 O3' A B 553 -0.585 91.362 98.277 1.00 52.86 O
ATOM 11 C2' A B 553 0.624 93.396 97.696 1.00 51.98 C
ATOM 12 O2' A B 553 1.410 92.560 96.863 1.00 49.59 O
ATOM 13 C1' A B 553 0.169 94.628 96.907 1.00 52.18 C
ATOM 14 N9 A B 553 0.028 95.852 97.697 1.00 51.48 N
ATOM 15 C8 A B 553 -1.107 96.415 98.212 1.00 51.64 C
ATOM 16 N7 A B 553 -0.901 97.559 98.822 1.00 52.03 N
ATOM 17 C5 A B 553 0.468 97.757 98.709 1.00 52.24 C
ATOM 18 C6 A B 553 1.330 98.809 99.135 1.00 52.52 C
ATOM 19 N6 A B 553 0.913 99.919 99.756 1.00 51.41 N
ATOM 20 N1 A B 553 2.646 98.677 98.883 1.00 51.65 N
ATOM 21 C2 A B 553 3.063 97.582 98.234 1.00 52.29 C
ATOM 22 N3 A B 553 2.358 96.546 97.769 1.00 52.44 N
ATOM 23 C4 A B 553 1.054 96.698 98.041 1.00 52.22 C
ATOM 24 P A B 554 -0.703 90.796 99.778 1.00 53.18 P
ATOM 25 OP1 A B 554 -0.828 89.324 99.559 1.00 51.89 O
ATOM 26 OP2 A B 554 -1.746 91.522 100.547 1.00 52.64 O
ATOM 27 O5' A B 554 0.695 91.129 100.481 1.00 52.51 O
TER
ATOM 2 P G A 580 -5.994 104.169 105.152 1.00 62.44 P
ATOM 3 OP1 G A 580 -5.637 105.614 105.133 1.00 61.56 O
ATOM 4 OP2 G A 580 -7.219 103.707 104.459 1.00 61.89 O
ATOM 5 O5' G A 580 -4.799 103.326 104.527 1.00 63.27 O
ATOM 6 C5' G A 580 -3.436 103.519 104.936 1.00 60.68 C
ATOM 7 C4' G A 580 -2.566 102.502 104.252 1.00 59.33 C
ATOM 8 O4' G A 580 -2.987 101.168 104.648 1.00 59.36 O
ATOM 9 C3' G A 580 -2.698 102.473 102.740 1.00 58.64 C
ATOM 10 O3' G A 580 -1.853 103.433 102.136 1.00 56.62 O
ATOM 11 C2' G A 580 -2.202 101.074 102.409 1.00 58.98 C
ATOM 12 O2' G A 580 -0.793 101.002 102.451 1.00 62.01 O
ATOM 13 C1' G A 580 -2.769 100.265 103.575 1.00 59.14 C
ATOM 14 N9 G A 580 -4.024 99.595 103.242 1.00 59.88 N
ATOM 15 C8 G A 580 -5.301 100.076 103.428 1.00 60.93 C
ATOM 16 N7 G A 580 -6.230 99.246 103.023 1.00 61.32 N
ATOM 17 C5 G A 580 -5.527 98.150 102.543 1.00 59.79 C
ATOM 18 C6 G A 580 -5.991 96.940 101.982 1.00 59.77 C
ATOM 19 O6 G A 580 -7.159 96.559 101.817 1.00 61.09 O
ATOM 20 N1 G A 580 -4.935 96.119 101.601 1.00 59.42 N
ATOM 21 C2 G A 580 -3.606 96.410 101.756 1.00 59.37 C
ATOM 22 N2 G A 580 -2.746 95.491 101.301 1.00 58.91 N
ATOM 23 N3 G A 580 -3.156 97.521 102.306 1.00 59.44 N
ATOM 24 C4 G A 580 -4.163 98.347 102.667 1.00 59.68 C
ATOM 25 P A A 581 -2.465 104.787 101.540 1.00 57.05 P
ATOM 26 OP1 A A 581 -2.359 105.823 102.597 1.00 54.42 O
ATOM 27 OP2 A A 581 -3.771 104.538 100.891 1.00 56.88 O
ATOM 28 O5' A A 581 -1.450 105.158 100.375 1.00 56.79 O
TER
ATOM 1 O3' G B 552 -5.415 94.838 97.081 1.00 56.22 O
ATOM 2 P A B 553 -4.949 93.868 98.270 1.00 53.31 P
ATOM 3 OP1 A B 553 -5.559 92.563 97.975 1.00 52.00 O
ATOM 4 OP2 A B 553 -5.115 94.476 99.610 1.00 53.66 O
ATOM 5 O5' A B 553 -3.406 93.700 97.970 1.00 52.71 O
ATOM 6 C5' A B 553 -2.975 92.910 96.856 1.00 53.47 C
ATOM 7 C4' A B 553 -1.480 92.986 96.729 1.00 53.72 C
ATOM 8 O4' A B 553 -1.086 94.321 96.324 1.00 53.56 O
ATOM 9 C3' A B 553 -0.713 92.754 98.022 1.00 52.49 C
ATOM 10 O3' A B 553 -0.585 91.362 98.277 1.00 52.86 O
ATOM 11 C2' A B 553 0.624 93.396 97.696 1.00 51.98 C
ATOM 12 O2' A B 553 1.410 92.560 96.863 1.00 49.59 O
ATOM 13 C1' A B 553 0.169 94.628 96.907 1.00 52.18 C
ATOM 14 N9 A B 553 0.028 95.852 97.697 1.00 51.48 N
ATOM 15 C8 A B 553 -1.107 96.415 98.212 1.00 51.64 C
ATOM 16 N7 A B 553 -0.901 97.559 98.822 1.00 52.03 N
ATOM 17 C5 A B 553 0.468 97.757 98.709 1.00 52.24 C
ATOM 18 C6 A B 553 1.330 98.809 99.135 1.00 52.52 C
ATOM 19 N6 A B 553 0.913 99.919 99.756 1.00 51.41 N
ATOM 20 N1 A B 553 2.646 98.677 98.883 1.00 51.65 N
ATOM 21 C2 A B 553 3.063 97.582 98.234 1.00 52.29 C
ATOM 22 N3 A B 553 2.358 96.546 97.769 1.00 52.44 N
ATOM 23 C4 A B 553 1.054 96.698 98.041 1.00 52.22 C
ATOM 24 P A B 554 -0.703 90.796 99.778 1.00 53.18 P
ATOM 25 OP1 A B 554 -0.828 89.324 99.559 1.00 51.89 O
ATOM 26 OP2 A B 554 -1.746 91.522 100.547 1.00 52.64 O
ATOM 27 O5' A B 554 0.695 91.129 100.481 1.00 52.51 O
TER
Atoms:
OP1: (-5.637,105.614,105.133)
OP2: (-7.219,103.707,104.459)
C3': (-2.698,102.473,102.740)
C1': (-2.769,100.265,103.575)
C5': (-3.436,103.519,104.936)
O6: (-7.159,96.559,101.817)
O4': (-2.987,101.168,104.648)
C8: (-5.301,100.076,103.428)
C2: (-3.606,96.410,101.756)
C6: (-5.991,96.940,101.982)
C5: (-5.527,98.150,102.543)
C4: (-4.163,98.347,102.667)
P: (-5.994,104.169,105.152)
C4': (-2.566,102.502,104.252)
C2': (-2.202,101.074,102.409)
O2': (-0.793,101.002,102.451)
N1: (-4.935,96.119,101.601)
N2: (-2.746,95.491,101.301)
N3: (-3.156,97.521,102.306)
N7: (-6.230,99.246,103.023)
N9: (-4.024,99.595,103.242)
O5': (-4.799,103.326,104.527)
O3': (-1.853,103.433,102.136)
OP2: (-7.219,103.707,104.459)
C3': (-2.698,102.473,102.740)
C1': (-2.769,100.265,103.575)
C5': (-3.436,103.519,104.936)
O6: (-7.159,96.559,101.817)
O4': (-2.987,101.168,104.648)
C8: (-5.301,100.076,103.428)
C2: (-3.606,96.410,101.756)
C6: (-5.991,96.940,101.982)
C5: (-5.527,98.150,102.543)
C4: (-4.163,98.347,102.667)
P: (-5.994,104.169,105.152)
C4': (-2.566,102.502,104.252)
C2': (-2.202,101.074,102.409)
O2': (-0.793,101.002,102.451)
N1: (-4.935,96.119,101.601)
N2: (-2.746,95.491,101.301)
N3: (-3.156,97.521,102.306)
N7: (-6.230,99.246,103.023)
N9: (-4.024,99.595,103.242)
O5': (-4.799,103.326,104.527)
O3': (-1.853,103.433,102.136)
OP1: (-5.559,92.563,97.975)
OP2: (-5.115,94.476,99.610)
C3': (-0.713,92.754,98.022)
C1': (0.169,94.628,96.907)
C5': (-2.975,92.910,96.856)
O4': (-1.086,94.321,96.324)
C8: (-1.107,96.415,98.212)
O2': (1.410,92.560,96.863)
C6: (1.330,98.809,99.135)
C5: (0.468,97.757,98.709)
C4: (1.054,96.698,98.041)
P: (-4.949,93.868,98.270)
C4': (-1.480,92.986,96.729)
C2': (0.624,93.396,97.696)
C2: (3.063,97.582,98.234)
N1: (2.646,98.677,98.883)
N3: (2.358,96.546,97.769)
N6: (0.913,99.919,99.756)
N7: (-0.901,97.559,98.822)
N9: (0.028,95.852,97.697)
O5': (-3.406,93.700,97.970)
O3': (-0.585,91.362,98.277)
OP2: (-5.115,94.476,99.610)
C3': (-0.713,92.754,98.022)
C1': (0.169,94.628,96.907)
C5': (-2.975,92.910,96.856)
O4': (-1.086,94.321,96.324)
C8: (-1.107,96.415,98.212)
O2': (1.410,92.560,96.863)
C6: (1.330,98.809,99.135)
C5: (0.468,97.757,98.709)
C4: (1.054,96.698,98.041)
P: (-4.949,93.868,98.270)
C4': (-1.480,92.986,96.729)
C2': (0.624,93.396,97.696)
C2: (3.063,97.582,98.234)
N1: (2.646,98.677,98.883)
N3: (2.358,96.546,97.769)
N6: (0.913,99.919,99.756)
N7: (-0.901,97.559,98.822)
N9: (0.028,95.852,97.697)
O5': (-3.406,93.700,97.970)
O3': (-0.585,91.362,98.277)
Image (generated by PyMOL):